Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3061 174 2e-41 seq348 174 2e-41 seq13 136 6e-30 seq5 80.6 4e-13 >seq3061 Length=4694 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 3039 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 2982 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 2981 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 2922 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 2921 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 2862 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 2861 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 2809 >seq348 Length=37117 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 22797 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 22854 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 22855 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 22914 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 22915 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 22974 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 22975 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 23027 >seq13 Length=63241923 Score = 136 bits (150), Expect = 6e-30 Identities = 176/235 (75%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| |||||| || ||||| | |||| ||||| ||| |||||| |||||| | Sbjct 63239315 GTACAAAGGGGAGGGACTTAATCAACACAGGCTT-ATGACCCGCACTTACTGGGAATT-C 63239258 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGA-T 118 |||||| | | || |||||| || | |||||||||| || || ||||| | | Sbjct 63239257 CTCGTTCATGGGGAATAATTGCCATCCCCAATCCCCATCATGAATGGGGGTTCAATGGGT 63239198 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||| ||||| |||| ||| | || | ||| |||||||||| | ||||| Sbjct 63239197 TACCCC-ACCTGCCGGCGTAGGGTAGGCACATGCTGAGCCAGTCAGTGTAGCACACGTGC 63239139 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 63239138 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 63239085 >seq5 Length=88915250 Score = 80.6 bits (88), Expect = 4e-13 Identities = 164/233 (70%), Gaps = 13/233 (6%) Strand=Plus/Plus Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63 |||||||| ||||| || || | ||||| ||||| | | |||||| |||||| ||| Sbjct 63551200 CAAAGGGCGGGGACTTA----ACACAAGCTT-ATGACCCACACTTACTGGGAATT-CCTT 63551253 Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATTACC 122 | | | || || |||||| | ||||||||||| | || ||| | | ||||| Sbjct 63551254 GCTCCTGGGGAATAACTGCAATCCCC-ATCCCCATCACAAATGGGATTCAATGGGTTACC 63551312 Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGA-ATACA-TCAGTGTAGCGCGCGTGCGG 180 ||||| || ||| |||| | | | | || |||||||| | ||||| | Sbjct 63551313 TACACCTGCTGGGGTAGG--ATAGGCACACACACAGCCAGTCAGTGTAATACACGTGCAG 63551370 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| | ||||||| |||||||||||||||||||||| ||||| ||| ||||| Sbjct 63551371 CCCTGGACATCTACGGGCATCACAGACCTGTTATTG-CTCAATCTTGGGTGGC 63551422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751976192620