Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq348 149 3e-33 seq7 149 3e-33 seq31 109 2e-21 seq6 82.4 3e-13 >seq348 Length=37117 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 17990 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 17931 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 17930 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 17871 >seq7 Length=80974532 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 80969020 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 80968961 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 80968960 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 80968901 >seq31 Length=39895921 Score = 109 bits (120), Expect = 2e-21 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||||||||||||| | || ||| |||||| | | |||| ||||||| Sbjct 103729 GAGTCGGATTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCACCTAAGGCTAAAT 103788 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | |||| ||||||| |||||| | Sbjct 103789 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAATTTGAAAAGAACTTTGAAG 103848 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 103849 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 103888 >seq6 Length=77573801 Score = 82.4 bits (90), Expect = 3e-13 Identities = 98/135 (73%), Gaps = 10/135 (7%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| || |||| ||||| ||||| ||||||| ||||||| | |||||| Sbjct 16667570 GAGCATGAGCACAGGTGTTAGGACCAGAAAGGTGGTGAATGATGCCTGGGCACAGTGAAG 16667511 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||||||| ||||| |||| ||| || | |||||||| | ||| || Sbjct 16667510 CCAGAGGAAGCTCTGCTGGA----------GGTCCTAGTATGCAAATCCGTAGTCCAACC 16667461 Query 669 TGGGTATAGGGGCGA 683 |||||| |||||||| Sbjct 16667460 TGGGTACAGGGGCGA 16667446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079929901400