Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3061 244 2e-62 seq348 244 2e-62 seq13 187 4e-45 seq5 159 6e-37 seq11 156 7e-36 seq7 87.8 3e-15 seq6 77.0 5e-12 seq39 75.2 2e-11 >seq3061 Length=4694 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 2881 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 2823 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 2822 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 2764 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 2763 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 2704 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 2703 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 2644 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 2643 ATCAATCTGTC 2633 >seq348 Length=37117 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 22955 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 23013 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 23014 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 23072 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 23073 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 23132 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 23133 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 23192 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 23193 ATCAATCTGTC 23203 >seq13 Length=63241923 Score = 187 bits (206), Expect = 4e-45 Identities = 196/253 (77%), Gaps = 11/253 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | ||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 63239157 GTCAGTGTAGCACACGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 63239099 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATA 131 ||| || | |||||| | |||| | |||||||||||||| | | |||| || Sbjct 63239098 CAATCT-CGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCAAGCACT 63239040 Query 132 GTCG----ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | ||| ||| |||||| | | ||||| ||||||||||||||||||||||| Sbjct 63239039 CTGGGGTCATGTAACTAGTTAGCATGCCAGAGTCTCCTTCGTTATCGGAATTAACCAGAC 63238980 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGC--ACCACCACCCATAGAATCAAGAAAGAG 245 ||||| ||||||||| |||||| ||||||| |||||| | |||| |||||||| Sbjct 63238979 AAATCGCTCCACCAAGTAAGAATAGCCATGCGTCACACCACTCGCGGAATTGAGAAAGAG 63238920 Query 246 CTATCAATCTGTC 258 |||||||| |||| Sbjct 63238919 CTATCAATGTGTC 63238907 >seq5 Length=88915250 Score = 159 bits (176), Expect = 6e-37 Identities = 194/257 (75%), Gaps = 17/257 (7%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| | ||||| |||| | ||||||| ||||||||||||||||||||||| | Sbjct 63551350 GTCAGTGTAATACACGTGCAGCCCTGGACATCTACGGGCATCACAGACCTGTTATTGC-T 63551408 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-AGCCAC-CAACCAT-- 130 ||| ||| | ||||| | ||| | |||||||||||||| || || | || | Sbjct 63551409 CAATCTTGGGT-GGCTGAACACCATTTGTCCCTCTAAGAAGTTGAGGGACGCCGCCCTCT 63551467 Query 131 -AGTCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | || ||| |||||| || ||||| ||| |||||||||||||||| Sbjct 63551468 CAGGGGTTGCATAACTAGTTAGCATACCAAAGTCTCATTCATTATCGGAATTAACCA--- 63551524 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||| ||||||||| |||| |||||||||||||||||| ||||||||||| |||| Sbjct 63551525 -AATTGCTCCACCAA----GAACAGCCATGCACCACCACCCAGGGAATCAAGAAAAAGCT 63551579 Query 248 ATCAATCTGTCCTCCCT 264 ||||||||||| |||| Sbjct 63551580 ATCAATCTGTCAACCCT 63551596 >seq11 Length=74389097 Score = 156 bits (172), Expect = 7e-36 Identities = 181/238 (76%), Gaps = 16/238 (7%) Strand=Plus/Plus Query 31 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC---CTCAAACTTCCATTG 87 ||| |||| | |||| ||||||| ||||||||||||||| ||||| || | ||| Sbjct 26804804 TGCAGCCCCGGACATGTAAGGGCGACACAGACCTGTTATTTATTGCTCAATCT-CGGTTG 26804862 Query 88 GCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCAT-----AGTCGATGG 139 |||| | |||| | ||||||||||| ||| | | |||| | ||||| || Sbjct 26804863 GCTGAATGCCACTTGTCCCTCTAAGGAGCTGGGGGACGCCAATCGCTTGGGAGTCG-TGT 26804921 Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 ||| |||| | | | |||||||| |||||||||||||||||||||||| |||||| Sbjct 26804922 AACTACTTAGAATGACA--GTCTCGTTTGTTATCGGAATTAACCAGACAAATTGCTCCAC 26804979 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||||||| ||||| ||||||||||||| ||| || ||||||||||||||||| Sbjct 26804980 CAACTAAGAATGGCCAAGCACCACCACCCACGGAACTGAG-AAGAGCTATCAATCTGT 26805036 >seq7 Length=80974532 Score = 87.8 bits (96), Expect = 3e-15 Identities = 170/251 (68%), Gaps = 29/251 (12%) Strand=Plus/Minus Query 21 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 80 |||| ||| |||| | || | ||||||||||| ||||| | ||||||| || || || | Sbjct 27204082 GTAGGGCGTGTGCAGGCCCGGACATCTAAGGGTATCACTGGCCTGTTACTG-CTAAATCG 27204024 Query 81 TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGG- 139 | | | | | | ||| | |||||||||||||| | | | || || ||| || || Sbjct 27204023 TGGGTAGTCGAGCA-CCACTTGTCCCTCTAAGAAGTCGGAAAACA--CAGAGTTGAGGGT 27203967 Query 140 ------GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | | |||||| | | ||||| || || | |||||||||||| ||| ||| Sbjct 27203966 TCTAGTGACCAGTTAGCATGCCAGAGTCTCATTTGTGACCGGAATTAACCAAACAGATCC 27203907 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA----T 249 ||||| |||||| ||| |||||| ||||||||||||||||| | Sbjct 27203906 CTCCA--------------CCATGCGCCATGACCCATGGAATCAAGAAAGAGCTACTACT 27203861 Query 250 CAATCTGTCCT 260 | ||| ||||| Sbjct 27203860 CTATCAGTCCT 27203850 >seq6 Length=77573801 Score = 77.0 bits (84), Expect = 5e-12 Identities = 130/184 (71%), Gaps = 12/184 (7%) Strand=Plus/Plus Query 31 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCT 90 ||| |||| ||| ||||||| ||||||| | || ||||||| ||||||| | | || | Sbjct 17961559 TGCAGCCCTGAATGTCTAAGGACATCACAAATCTATTATTGC-TCAAACT-CTAGTGATT 17961616 Query 91 GGAAGCCAATAGTCCCTCTAAGAAGCC--AGCCACCAACCATAGTCGATGGGGCTAT--- 145 | | ||| | ||||||||||||||| || | ||||||| || | || ||| Sbjct 17961617 GAACACCACTTGTCCCTCTAAGAAGCTGGAGTCGCCAACCAC--TCAAGGGTCATATAAT 17961674 Query 146 ---TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 |||||| | | || | | |||| | |||| ||||||||||||||||||| || Sbjct 17961675 TAGTTAGCATGCTTGAGTGTTACTTGTTACCAGAATAAACCAGACAAATCACTCCATTAA 17961734 Query 203 CTAA 206 | || Sbjct 17961735 CCAA 17961738 >seq39 Length=123869142 Score = 75.2 bits (82), Expect = 2e-11 Identities = 89/119 (75%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||| |||| |||| |||||||||||| || || |||||| | Sbjct 47357435 CTAGTTAGCATGCCAGAGTCTTGTTCATTATAGGAATTAACCAGGCAGATTGCTCCACAA 47357494 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT-CTGTCC 259 || ||| ||| | ||||||| || ||||| ||||||||| ||||| |||||| Sbjct 47357495 ---AATAACAGCCGCGTACCACCATGCACAGAATTGGGAAAGAGCTGTCAATCCTGTCC 47357550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796774774308