Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3061 197 3e-48 seq348 197 3e-48 seq13 161 2e-37 seq5 95.1 2e-17 >seq3061 Length=4694 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2783 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 2840 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 2841 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 2900 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 2901 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 2960 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 2961 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 3020 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 3021 AAGTCCCTGCCCTTTGTA 3038 >seq348 Length=37117 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 23053 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 22996 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 22995 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 22936 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 22935 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 22876 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 22875 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 22816 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 22815 AAGTCCCTGCCCTTTGTA 22798 >seq13 Length=63241923 Score = 161 bits (178), Expect = 2e-37 Identities = 195/259 (75%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 63239059 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 63239116 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||| | ||||||||||| | || | || | | Sbjct 63239117 ATGCCCTTAGATGTCCGGGGCTGCACGTGTGCTACACTGACTGGCTCAGCATGTGCCTAC 63239176 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA-ACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||||| |||| |||||| | | || | | || || ||||||| | | || Sbjct 63239177 CCTACGCCGGCAGGT-GGGGTAACCCATTGAACCCCCATTCATGATGGGGATTGGGGATG 63239235 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | |||||||||| || |||||| ||| ||||| ||| | |||||| Sbjct 63239236 GCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCCTGTGTTGAT 63239295 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||| ||||||||| Sbjct 63239296 TAAGTCCCTCCCCTTTGTA 63239314 >seq5 Length=88915250 Score = 95.1 bits (104), Expect = 2e-17 Identities = 178/256 (70%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | |||| | ||| ||||| |||||||||||||||| Sbjct 63551448 CTTCTTAGAGGGACAAATGGTGTTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTG 63551391 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||| ||||||| | |||| ||||| | ||||||||| | | || | | Sbjct 63551390 ATGCCCGTAGATGTCCAGGGCTGCACGTGTATTACACTGACTGGCTGTGTGTGTGCCTAT 63551331 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | |||| | ||||| | | || | | | ||| ||||||| | | |||| Sbjct 63551330 CCTACCCCAGCAGGTGTAGGTAACCCATTGAATCCCATTTGTGATGGGGAT-GGGGATTG 63551272 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || ||||| | | | | |||||| || |||||| | | ||||| ||| | | || Sbjct 63551271 CAGTTATTCCCCAGGAGCAAGGAATTCCCAGTAAGTGTGGGTCATAAGCTTGTG----TT 63551216 Query 311 ACGTCCCTGCCCTTTG 326 | ||||| |||||||| Sbjct 63551215 AAGTCCCCGCCCTTTG 63551200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947169045504