Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24]
89,498 sequences; 2,828,873,048 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq6 174 2e-41
seq11 107 3e-21
seq22 98.7 1e-18
seq4 98.7 1e-18
seq17 95.1 2e-17
>seq6
Length=124183866
Score = 174 bits (192), Expect = 2e-41
Identities = 182/234 (78%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| |
Sbjct 22509555 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 22509612
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || ||||||||| | ||||||||||||| ||||| | ||
Sbjct 22509613 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 22509672
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||| |||| ||| | || || ||| ||||||||||||||||||
Sbjct 22509673 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 22509732
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 22509733 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 22509785
>seq11
Length=102031526
Score = 107 bits (118), Expect = 3e-21
Identities = 155/213 (73%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||| ||||| ||||| || |||||| |||||| |
Sbjct 88183673 GTACAAAGGGCAGGGACTTA----ACGCAAGCTT-ATGACCCGTACTTACTGGGAATT-C 88183726
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || || |||||| ||||||||||| | ||||| | ||
Sbjct 88183727 CTCGTTCATGGGGAATAACTGCAATCCCTGATCCCCATCACTAATGGGGTTCAACGGGTT 88183786
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| |||| | || ||| | || | ||| | ||||||||| ||| ||||
Sbjct 88183787 ACCCACGCCTGCCAGCACAGGGTAGGCACATGCTGACCAG-TCAGTGTAGTGCGTGTGCA 88183845
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTT 212
|||| | ||||||||||||||||||||||||||
Sbjct 88183846 GCCCCGGACATCTAAGGGCATCACAGACCTGTT 88183878
>seq22
Length=61117494
Score = 98.7 bits (108), Expect = 1e-18
Identities = 85/103 (83%), Gaps = 2/103 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| |||
Sbjct 31402839 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 31402896
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103
|||||| | | || ||||||||| | |||||||||||||
Sbjct 31402897 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGA 31402939
>seq4
Length=118086705
Score = 98.7 bits (108), Expect = 1e-18
Identities = 157/219 (72%), Gaps = 5/219 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||| | ||||| ||||| | |||||| |||||| |
Sbjct 103566260 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGACCCTTACTTACTGGGAATT-C 103566203
Query 61 CTCGTTGA-AGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGAT 118
||| || ||| || ||||||||| |||||||| | || ||||| || |
Sbjct 103566202 CTCATTCCTAGAGAAA-AATTGCAATCCCAGATCCCCATTATGAATGGGGTTCAACAGGT 103566144
Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||| | |||| ||| || | || | |||| |||||| ||| || |||
Sbjct 103566143 CACCTGTGCCTGCAGGCGTTGGGTAGGCACACATTGAGCCAGTCAGTGGAGCATGCCTGC 103566084
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
|||| | ||||||||||| |||||||||||||||||||
Sbjct 103566083 AGCCCTGGACATCTAAGGGTATCACAGACCTGTTATTGC 103566045
>seq17
Length=72096382
Score = 95.1 bits (104), Expect = 2e-17
Identities = 142/198 (72%), Gaps = 3/198 (2%)
Strand=Plus/Minus
Query 37 TGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCC 96
|||| | | |||||| |||||| |||| || | | || ||||||||| ||||||
Sbjct 25512975 TGACCCACACTTACTGGGAATT-CCTCATTCATGGGGAATAATTGCAATCCCTGATCCCC 25512917
Query 97 ATCACGATGAAATTTCAA-AGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGA 155
||||||| ||||| || ||||| | |||| |||| ||| | || | |||
Sbjct 25512916 ATCACGAATGGGGTTCAACAGGTTACCTGCGCCTGCCGGCGTAGGGTAGGCACATGGTGA 25512857
Query 156 ATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 215
||||||||||| |||||| |||| | |||| |||||||||| ||||||||||||
Sbjct 25512856 GCCAGTCAGTGTAGCGTGCGTGCAGCCCTGGACATATAAGGGCATCTTAGACCTGTTATT 25512797
Query 216 GCCTCAAACTTCCGTGGC 233
| ||||| || |||||
Sbjct 25512796 G-CTCAATCTCGGGTGGC 25512780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751348007070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |