Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq6 174 2e-41 seq11 107 3e-21 seq22 98.7 1e-18 seq4 98.7 1e-18 seq17 95.1 2e-17 >seq6 Length=124183866 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 22509555 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 22509612 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 22509613 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 22509672 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 22509673 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 22509732 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 22509733 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 22509785 >seq11 Length=102031526 Score = 107 bits (118), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| ||||| ||||| || |||||| |||||| | Sbjct 88183673 GTACAAAGGGCAGGGACTTA----ACGCAAGCTT-ATGACCCGTACTTACTGGGAATT-C 88183726 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || || |||||| ||||||||||| | ||||| | || Sbjct 88183727 CTCGTTCATGGGGAATAACTGCAATCCCTGATCCCCATCACTAATGGGGTTCAACGGGTT 88183786 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| |||| | || ||| | || | ||| | ||||||||| ||| |||| Sbjct 88183787 ACCCACGCCTGCCAGCACAGGGTAGGCACATGCTGACCAG-TCAGTGTAGTGCGTGTGCA 88183845 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTT 212 |||| | |||||||||||||||||||||||||| Sbjct 88183846 GCCCCGGACATCTAAGGGCATCACAGACCTGTT 88183878 >seq22 Length=61117494 Score = 98.7 bits (108), Expect = 1e-18 Identities = 85/103 (83%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| ||| Sbjct 31402839 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 31402896 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 |||||| | | || ||||||||| | ||||||||||||| Sbjct 31402897 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGA 31402939 >seq4 Length=118086705 Score = 98.7 bits (108), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | ||||| ||||| | |||||| |||||| | Sbjct 103566260 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGACCCTTACTTACTGGGAATT-C 103566203 Query 61 CTCGTTGA-AGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGAT 118 ||| || ||| || ||||||||| |||||||| | || ||||| || | Sbjct 103566202 CTCATTCCTAGAGAAA-AATTGCAATCCCAGATCCCCATTATGAATGGGGTTCAACAGGT 103566144 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| | |||| ||| || | || | |||| |||||| ||| || ||| Sbjct 103566143 CACCTGTGCCTGCAGGCGTTGGGTAGGCACACATTGAGCCAGTCAGTGGAGCATGCCTGC 103566084 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||| ||||||||||||||||||| Sbjct 103566083 AGCCCTGGACATCTAAGGGTATCACAGACCTGTTATTGC 103566045 >seq17 Length=72096382 Score = 95.1 bits (104), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 37 TGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCC 96 |||| | | |||||| |||||| |||| || | | || ||||||||| |||||| Sbjct 25512975 TGACCCACACTTACTGGGAATT-CCTCATTCATGGGGAATAATTGCAATCCCTGATCCCC 25512917 Query 97 ATCACGATGAAATTTCAA-AGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGA 155 ||||||| ||||| || ||||| | |||| |||| ||| | || | ||| Sbjct 25512916 ATCACGAATGGGGTTCAACAGGTTACCTGCGCCTGCCGGCGTAGGGTAGGCACATGGTGA 25512857 Query 156 ATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 215 ||||||||||| |||||| |||| | |||| |||||||||| |||||||||||| Sbjct 25512856 GCCAGTCAGTGTAGCGTGCGTGCAGCCCTGGACATATAAGGGCATCTTAGACCTGTTATT 25512797 Query 216 GCCTCAAACTTCCGTGGC 233 | ||||| || ||||| Sbjct 25512796 G-CTCAATCTCGGGTGGC 25512780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751348007070