Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq17 113 8e-23 >seq17 Length=72096382 Score = 113 bits (124), Expect = 8e-23 Identities = 109/137 (80%), Gaps = 5/137 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 48707621 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 48707680 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 48707681 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCGG 48707739 Query 155 TTCTATTTTGTTGGTTT 171 ||||||||||||||||| Sbjct 48707740 TTCTATTTTGTTGGTTT 48707756 Score = 111 bits (122), Expect = 3e-22 Identities = 130/173 (75%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 ||||||||| | ||||||||||||||||||| | | || | | |||||||| ||||| Sbjct 25512182 GAATAGGACC-GTGGTTCTATTTTGTTGGTTTTTGGAACTGAGGCCATGATTAAGAGGGA 25512240 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 | | | |||| | ||||| | |||||||||||||||||| | ||||| Sbjct 25512241 TGGCCAGGGGCATTCGTATTGCACCACTAGAGGTGAAATTCTTGGACCAGTGCAAGACGG 25512300 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || | |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 25512301 ACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 25512352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914380914304