Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24]
89,498 sequences; 2,828,873,048 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq17 113 8e-23
>seq17
Length=72096382
Score = 113 bits (124), Expect = 8e-23
Identities = 109/137 (80%), Gaps = 5/137 (4%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | ||||||||||||||||||||||||
Sbjct 48707621 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 48707680
Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
|||||||||||| || | |||| ||| |||||||| ||||||||| ||||
Sbjct 48707681 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCGG 48707739
Query 155 TTCTATTTTGTTGGTTT 171
|||||||||||||||||
Sbjct 48707740 TTCTATTTTGTTGGTTT 48707756
Score = 111 bits (122), Expect = 3e-22
Identities = 130/173 (75%), Gaps = 2/173 (1%)
Strand=Plus/Plus
Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199
||||||||| | ||||||||||||||||||| | | || | | |||||||| |||||
Sbjct 25512182 GAATAGGACC-GTGGTTCTATTTTGTTGGTTTTTGGAACTGAGGCCATGATTAAGAGGGA 25512240
Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259
| | | |||| | ||||| | |||||||||||||||||| | |||||
Sbjct 25512241 TGGCCAGGGGCATTCGTATTGCACCACTAGAGGTGAAATTCTTGGACCAGTGCAAGACGG 25512300
Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| | |||||||| || ||||| |||||||||||||||| ||||||||||
Sbjct 25512301 ACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 25512352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914380914304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |