Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2393 118 4e-24 seq28 114 5e-23 seq17 109 2e-21 seq10704 105 3e-20 seq19 93.3 2e-16 seq20 86.0 3e-14 seq15581 82.4 3e-13 seq22 80.6 1e-12 seq11 80.6 1e-12 seq83875 77.0 1e-11 seq4 77.0 1e-11 seq2 75.2 5e-11 >seq2393 Length=131415 Score = 118 bits (130), Expect = 4e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| |||||||||||||||||||||| ||| ||||| |||||||||||||| Sbjct 2128 TGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGATGAAGGCAGAGGAAACTCTG 2069 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | ||| | || ||||||||||| | ||| | ||||||||||||||| Sbjct 2068 GTGGAGGACCATAGCAATCCTAACGTGCAAATCGGTTGTCTGACCTGGGTATAGGGGCGA 2009 >seq28 Length=38539107 Score = 114 bits (126), Expect = 5e-23 Identities = 106/135 (79%), Gaps = 6/135 (4%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| |||| ||||| |||||||||||||||||| ||| |||| ||||||| || Sbjct 23239698 GAGCATACATGTTAGGACCGGAAAGATGGTGAACTATGTCTGGGCAGGGCGAAGCCACAG 23239757 Query 615 GAAACTCTGGTGGAGGCTC------GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||| | | |||||| ||| |||||||||| ||||| | Sbjct 23239758 GAAACTCTGGTGGAGGTCCGTAGCGGTAGCGGTCCTGATGTGCAAATCGGTCGTCTGACC 23239817 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||| Sbjct 23239818 CAGGTATAGGGGCGA 23239832 >seq17 Length=72096382 Score = 109 bits (120), Expect = 2e-21 Identities = 92/113 (81%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634 |||||||||| ||||||||||| | || |||||||||||||| ||||||||||| || Sbjct 37950994 GAAAGATGGTAAACTATGCCTGGGCATGGCGAAGCCAGAGGAAATTCTGGTGGAGGTCCG 37951053 Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTCAA----ATTTGGGTATAGGGGCGA 683 |||||| ||| ||||||||||| || || | | ||||||||||||||| Sbjct 37951054 TAGCGGTCCTGACGTGCAAATCGGTCATCCAGTCGACCTGGGTATAGGGGCGA 37951106 Score = 77.0 bits (84), Expect = 1e-11 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 ||||||||||||| |||||||||||| | || | || ||||| ||||||||||||||| Sbjct 12096914 TTGGGACCCGAAATATGGTGAACTATCCTTGGGCAAGGAGAAGCAAGAGGAAACTCTGGT 12096973 Query 626 GGAGG 630 ||||| Sbjct 12096974 GGAGG 12096978 >seq10704 Length=99533 Score = 105 bits (116), Expect = 3e-20 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| |||||||||| ||||||||||| ||| ||||| |||| ||||||||| Sbjct 62637 TGTTAGGACCTGAAAGATGGTAAACTATGCCTGGGCAGGATGAAGGCAGAAGAAACTCTG 62696 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | ||||| | ||| | ||| ||||||||||| | ||| | ||||||||||||| Sbjct 62697 GCGGAGGACCATAGCAATCCTGACGTGCAAATCGGTTGTCTGACCTGGGTATAGGGGC 62754 >seq19 Length=68041221 Score = 93.3 bits (102), Expect = 2e-16 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || ||| ||||||||||||||||||||| | ||| ||||||||||||| ||| Sbjct 31483756 TGTTAGGGCCCAAAAGATGGTGAACTATGCCTGGACGGGGCGAAGCCAGAGGAAGCTCCA 31483697 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA-GGGGCG 682 | || || | || ||| ||| | ||||||| | ||||| | |||||||| |||||| Sbjct 31483696 GCGGCGGTCCATAGTGGTCCTGACATGCAAATTGGTCGTCCGACCTGGGTATATGGGGCG 31483637 Query 683 A 683 | Sbjct 31483636 A 31483636 >seq20 Length=69976673 Score = 86.0 bits (94), Expect = 3e-14 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| ||||| |||||||||||||||||||||| |||| |||||||||||||| |||| Sbjct 6445375 GTTAGGACCGGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAA--CTGG 6445318 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 || ||| | ||||| ||| |||||| || ||||| Sbjct 6445317 TGAAGGTCCATTGCGGTCCTGACGTGCAGGTCAGTCGTC 6445279 >seq15581 Length=204 Score = 82.4 bits (90), Expect = 3e-13 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 ||||| |||||||| ||| ||||||||||| ||||||| || | ||||| |||| Sbjct 2 TCTAAGGCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAA 61 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| |||||| | |||||||| || || ||||||| ||| | ||| || || Sbjct 62 AAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 114 >seq22 Length=61117494 Score = 80.6 bits (88), Expect = 1e-12 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 |||||||||||| |||| | ||||||||||||||||||||| || |||||| | || Sbjct 21936010 AGATGGTGAACTGTGCCCAGACAGGGTGAAGCCAGAGGAAACTATGTTGGAGGTCCAAAG 21936069 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| || | |||| || | |||| | ||||||||||||| Sbjct 21936070 TGGTCTTGACATGCATATTGGCTGTCAGACCTGGGTATAGGGGC 21936113 >seq11 Length=102031526 Score = 80.6 bits (88), Expect = 1e-12 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 54468380 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 54468439 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 | ||| |||||||||| ||||||| || | ||||| |||| Sbjct 54468440 ACCGGCACGAGACCGATAATCAACAAGTACCGTAAGGGAAAGTTGAA 54468486 >seq83875 Length=967 Score = 77.0 bits (84), Expect = 1e-11 Identities = 108/152 (71%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 45 GAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGG 104 |||||| ||||||||||||| | || ||| |||||| | |||| |||||||| | Sbjct 714 GAGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCTATCTAGGGCTAAATACAAG 773 Query 105 CCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGA 164 | |||| |||| ||||||| || | ||||| ||||||| |||||| | | || Sbjct 774 CACAAGACTGATACTCAACAAGTACTGTAAGGGAAAGTTGAAAAGAACTTTGAAGAATGA 833 Query 165 GTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||| || || | ||||| ||| | ||| || Sbjct 834 GTTCAAGAGGGCCTGAAACCGTTAAGAGGTAA 865 >seq4 Length=118086705 Score = 77.0 bits (84), Expect = 1e-11 Identities = 98/134 (73%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| |||||||| | || || |||||| | | ||||| ||||||| Sbjct 15469079 GAGTCGGGTTGCTTGAAAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 15469020 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||| ||| || | |||| | |||| ||||| || Sbjct 15469019 ACCGGCACGAGACCGATAGTCAACACGTACCGTAAAGAAAAGTTAAAAAAAACTTT--AA 15468962 Query 160 AGAGAGTTAAAAAG 173 |||||||| || || Sbjct 15468961 AGAGAGTTCAAGAG 15468948 >seq2 Length=128023632 Score = 75.2 bits (82), Expect = 5e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||| | |||| ||||||| |||||||| ||| |||||||||||||||||||| ||||| Sbjct 99151874 GACTCAAAAGTTGGTGAATTATGCCTGGGCAGGATGAAGCCAGAGGAAACTCTGATGGAG 99151815 Query 630 GCTCGCAGCGGTTCTG 645 | || ||| || ||| Sbjct 99151814 GTTCATAGCAGTCCTG 99151799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078080267900