Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24]
89,498 sequences; 2,828,873,048 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq2393 118 4e-24
seq28 114 5e-23
seq17 109 2e-21
seq10704 105 3e-20
seq19 93.3 2e-16
seq20 86.0 3e-14
seq15581 82.4 3e-13
seq22 80.6 1e-12
seq11 80.6 1e-12
seq83875 77.0 1e-11
seq4 77.0 1e-11
seq2 75.2 5e-11
>seq2393
Length=131415
Score = 118 bits (130), Expect = 4e-24
Identities = 98/120 (82%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| ||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 2128 TGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGATGAAGGCAGAGGAAACTCTG 2069
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| | ||| | || ||||||||||| | ||| | |||||||||||||||
Sbjct 2068 GTGGAGGACCATAGCAATCCTAACGTGCAAATCGGTTGTCTGACCTGGGTATAGGGGCGA 2009
>seq28
Length=38539107
Score = 114 bits (126), Expect = 5e-23
Identities = 106/135 (79%), Gaps = 6/135 (4%)
Strand=Plus/Plus
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
||||||| |||| ||||| |||||||||||||||||| ||| |||| ||||||| ||
Sbjct 23239698 GAGCATACATGTTAGGACCGGAAAGATGGTGAACTATGTCTGGGCAGGGCGAAGCCACAG 23239757
Query 615 GAAACTCTGGTGGAGGCTC------GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||| | | |||||| ||| |||||||||| ||||| |
Sbjct 23239758 GAAACTCTGGTGGAGGTCCGTAGCGGTAGCGGTCCTGATGTGCAAATCGGTCGTCTGACC 23239817
Query 669 TGGGTATAGGGGCGA 683
|||||||||||||
Sbjct 23239818 CAGGTATAGGGGCGA 23239832
>seq17
Length=72096382
Score = 109 bits (120), Expect = 2e-21
Identities = 92/113 (81%), Gaps = 4/113 (4%)
Strand=Plus/Plus
Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634
|||||||||| ||||||||||| | || |||||||||||||| ||||||||||| ||
Sbjct 37950994 GAAAGATGGTAAACTATGCCTGGGCATGGCGAAGCCAGAGGAAATTCTGGTGGAGGTCCG 37951053
Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTCAA----ATTTGGGTATAGGGGCGA 683
|||||| ||| ||||||||||| || || | | |||||||||||||||
Sbjct 37951054 TAGCGGTCCTGACGTGCAAATCGGTCATCCAGTCGACCTGGGTATAGGGGCGA 37951106
Score = 77.0 bits (84), Expect = 1e-11
Identities = 56/65 (86%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
||||||||||||| |||||||||||| | || | || ||||| |||||||||||||||
Sbjct 12096914 TTGGGACCCGAAATATGGTGAACTATCCTTGGGCAAGGAGAAGCAAGAGGAAACTCTGGT 12096973
Query 626 GGAGG 630
|||||
Sbjct 12096974 GGAGG 12096978
>seq10704
Length=99533
Score = 105 bits (116), Expect = 3e-20
Identities = 94/118 (80%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| ||||| |||||||||| ||||||||||| ||| ||||| |||| |||||||||
Sbjct 62637 TGTTAGGACCTGAAAGATGGTAAACTATGCCTGGGCAGGATGAAGGCAGAAGAAACTCTG 62696
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
| ||||| | ||| | ||| ||||||||||| | ||| | |||||||||||||
Sbjct 62697 GCGGAGGACCATAGCAATCCTGACGTGCAAATCGGTTGTCTGACCTGGGTATAGGGGC 62754
>seq19
Length=68041221
Score = 93.3 bits (102), Expect = 2e-16
Identities = 94/121 (78%), Gaps = 1/121 (1%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| || ||| ||||||||||||||||||||| | ||| ||||||||||||| |||
Sbjct 31483756 TGTTAGGGCCCAAAAGATGGTGAACTATGCCTGGACGGGGCGAAGCCAGAGGAAGCTCCA 31483697
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA-GGGGCG 682
| || || | || ||| ||| | ||||||| | ||||| | |||||||| ||||||
Sbjct 31483696 GCGGCGGTCCATAGTGGTCCTGACATGCAAATTGGTCGTCCGACCTGGGTATATGGGGCG 31483637
Query 683 A 683
|
Sbjct 31483636 A 31483636
>seq20
Length=69976673
Score = 86.0 bits (94), Expect = 3e-14
Identities = 79/99 (80%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624
||| ||||| |||||||||||||||||||||| |||| |||||||||||||| ||||
Sbjct 6445375 GTTAGGACCGGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAA--CTGG 6445318
Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663
|| ||| | ||||| ||| |||||| || |||||
Sbjct 6445317 TGAAGGTCCATTGCGGTCCTGACGTGCAGGTCAGTCGTC 6445279
>seq15581
Length=204
Score = 82.4 bits (90), Expect = 3e-13
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
||||| |||||||| ||| ||||||||||| ||||||| || | ||||| ||||
Sbjct 2 TCTAAGGCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAA 61
Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
||| |||||| | |||||||| || || ||||||| ||| | ||| || ||
Sbjct 62 AAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 114
>seq22
Length=61117494
Score = 80.6 bits (88), Expect = 1e-12
Identities = 80/104 (77%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637
|||||||||||| |||| | ||||||||||||||||||||| || |||||| | ||
Sbjct 21936010 AGATGGTGAACTGTGCCCAGACAGGGTGAAGCCAGAGGAAACTATGTTGGAGGTCCAAAG 21936069
Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||| || | |||| || | |||| | |||||||||||||
Sbjct 21936070 TGGTCTTGACATGCATATTGGCTGTCAGACCTGGGTATAGGGGC 21936113
>seq11
Length=102031526
Score = 80.6 bits (88), Expect = 1e-12
Identities = 82/107 (77%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 54468380 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 54468439
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
| ||| |||||||||| ||||||| || | ||||| ||||
Sbjct 54468440 ACCGGCACGAGACCGATAATCAACAAGTACCGTAAGGGAAAGTTGAA 54468486
>seq83875
Length=967
Score = 77.0 bits (84), Expect = 1e-11
Identities = 108/152 (71%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 45 GAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGG 104
|||||| ||||||||||||| | || ||| |||||| | |||| |||||||| |
Sbjct 714 GAGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCTATCTAGGGCTAAATACAAG 773
Query 105 CCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGA 164
| |||| |||| ||||||| || | ||||| ||||||| |||||| | | ||
Sbjct 774 CACAAGACTGATACTCAACAAGTACTGTAAGGGAAAGTTGAAAAGAACTTTGAAGAATGA 833
Query 165 GTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196
||| || || | ||||| ||| | ||| ||
Sbjct 834 GTTCAAGAGGGCCTGAAACCGTTAAGAGGTAA 865
>seq4
Length=118086705
Score = 77.0 bits (84), Expect = 1e-11
Identities = 98/134 (73%), Gaps = 2/134 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||| |||||||| | || || |||||| | | ||||| |||||||
Sbjct 15469079 GAGTCGGGTTGCTTGAAAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 15469020
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||| ||| ||| || | |||| | |||| ||||| ||
Sbjct 15469019 ACCGGCACGAGACCGATAGTCAACACGTACCGTAAAGAAAAGTTAAAAAAAACTTT--AA 15468962
Query 160 AGAGAGTTAAAAAG 173
|||||||| || ||
Sbjct 15468961 AGAGAGTTCAAGAG 15468948
>seq2
Length=128023632
Score = 75.2 bits (82), Expect = 5e-11
Identities = 62/76 (82%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629
||| | |||| ||||||| |||||||| ||| |||||||||||||||||||| |||||
Sbjct 99151874 GACTCAAAAGTTGGTGAATTATGCCTGGGCAGGATGAAGCCAGAGGAAACTCTGATGGAG 99151815
Query 630 GCTCGCAGCGGTTCTG 645
| || ||| || |||
Sbjct 99151814 GTTCATAGCAGTCCTG 99151799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2078080267900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |