Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24]
89,498 sequences; 2,828,873,048 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq6 208 1e-51
seq17 205 1e-50
seq11 154 2e-35
seq2 123 4e-26
seq10 111 3e-22
seq3 111 3e-22
seq7 109 9e-22
seq1187 91.5 2e-16
seq15 86.0 1e-14
>seq6
Length=124183866
Score = 208 bits (230), Expect = 1e-51
Identities = 183/223 (82%), Gaps = 9/223 (4%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 22509713 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 22509771
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130
||| || | |||||| | |||| | |||||||||||||| | |||| |||| |
Sbjct 22509772 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACACCGACCACT 22509830
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | ||||||||||||||||||||||||||||
Sbjct 22509831 CGGGGGTCGTGTAACTAGTTAGCATGCCAGAATCTCGTTCGTTATCGGAATTAACCAGAC 22509890
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230
||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 22509891 AAATCGCTCCACCAACTAAGAACAGCCATGCACCACCACCCAT 22509933
Score = 131 bits (144), Expect = 3e-28
Identities = 184/251 (73%), Gaps = 17/251 (7%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA--CCTGTTATTGCCT 74
||||| || || ||| |||| ||||| |||||||||||||| ||||||| || |
Sbjct 78083026 CAGTGCAGTGCTTATGCAGCCCCAGACATCCAAGGGCATCACAGATGCCTGTTAGCGC-T 78083084
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAAC--CA 129
|| || || ||||| | |||| |||| |||||||||| | ||||||| |
Sbjct 78083085 CAGTCTCAGAT-GGCTGAATGCCACATGTCCTTCTAAGAAGCTGGGGGACACCAACTGCT 78083143
Query 130 TAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
|| | || |||| |||||| | | |||| ||||||||| |||||||||| ||
Sbjct 78083144 CAGGGGGTGCCTAGCTAGTTAGCATGACAGAGTCTTTTTCGTTATCAGAATTAACCAAAC 78083203
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
|||| ||||||||| |||| |||||||||||||| |||| |||| |||||||||
Sbjct 78083204 AAATTGCTCCACCAA----GAACAGCCATGCACCACCATCCATGGAATGGAGAAAGAGC- 78083258
Query 248 ATCAATCTGTC 258
||||||||||
Sbjct 78083259 -TCAATCTGTC 78083268
>seq17
Length=72096382
Score = 205 bits (226), Expect = 1e-50
Identities = 199/251 (79%), Gaps = 9/251 (4%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||||| |||||| |||| | |||| |||||||||| |||||||||||||| |
Sbjct 25512852 GTCAGTGTAGCGTGCGTGCAGCCCTGGACATATAAGGGCATCTTAGACCTGTTATTGC-T 25512794
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAACCA-- 129
||| || | |||||| | |||| | |||||||||||||| | || ||||
Sbjct 25512793 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGATGCCGACCACT 25512735
Query 130 TAGTCG--ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | |||||| | |||||||||||||| |||||
Sbjct 25512734 TGGGTGTCACGTAACTAGTTAGCATGCCAGAGTCTCGATTGTTATCGGAATTAATCAGAC 25512675
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
|||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||
Sbjct 25512674 AAATCACTCCACCAACTAAGAATGGCCATGCACCACCACCCACGGAATTGAGAAAGAGCT 25512615
Query 248 ATCAATCTGTC 258
|||||||||||
Sbjct 25512614 ATCAATCTGTC 25512604
>seq11
Length=102031526
Score = 154 bits (170), Expect = 2e-35
Identities = 94/100 (94%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 91876570 GTCTCCTTCGTTATCGGAATTAACCAGACAAATCACTTTACCAACTAAGAACGGCCATGC 91876511
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||| |||||| |||||||||||||| ||||||
Sbjct 91876510 ACCACCACCCACAGAATCGAGAAAGAGCTATCAGTCTGTC 91876471
Score = 86.0 bits (94), Expect = 1e-14
Identities = 78/97 (80%), Gaps = 5/97 (5%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||| ||| |||| |||| | |||||||||||||||||||||||||| ||
Sbjct 88183826 GTCAGTGTAGTGCGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTT----GCT 88183881
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111
||| | || |||||| | |||| | ||||||||||
Sbjct 88183882 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAA 88183917
>seq2
Length=128023632
Score = 123 bits (136), Expect = 4e-26
Identities = 99/118 (84%), Gaps = 1/118 (1%)
Strand=Plus/Minus
Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200
|||| |||||| | | || | || |||||| ||||||||||||||| || |||||||
Sbjct 58603656 GCTAGTTAGCATGCCAGAGTTTTATTTGTTATCAGAATTAACCAGACAATTC-CTCCACC 58603598
Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||| ||||||||||| |||| ||||||||| ||||||||||||
Sbjct 58603597 TTCTAAGAACGGCCATGCCCCACCACCCATGGAATTAAGAAAGAGTTATCAATCTGTC 58603540
>seq10
Length=107483571
Score = 111 bits (122), Expect = 3e-22
Identities = 82/95 (86%), Gaps = 8/95 (8%)
Strand=Plus/Minus
Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223
|||||||| |||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 14164228 GTTCGTTACCGGAATTAACCAGACAAATCACTCCACC----AAGAATGTCCATGCACCAC 14164173
Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||| ||||| |||||||||||||||||||||
Sbjct 14164172 CAC----GGAATCGAGAAAGAGCTATCAATCTGTC 14164142
>seq3
Length=114358107
Score = 111 bits (122), Expect = 3e-22
Identities = 75/84 (89%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233
|||||||||||||||||| |||||||||| ||||| ||||| | ||||||||||| |||
Sbjct 44160328 GGAATTAACCAGACAAATTGCTCCACCAACGAAGAATGGCCAAGTACCACCACCCACAGA 44160269
Query 234 ATCAAGAAAGAGCTATCAATCTGT 257
| ||||||||||||||| ||||||
Sbjct 44160268 ACCAAGAAAGAGCTATCGATCTGT 44160245
>seq7
Length=111973123
Score = 109 bits (120), Expect = 9e-22
Identities = 179/253 (71%), Gaps = 30/253 (12%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| || | || |||| | |||| |||||||||||||| ||||| ||| ||
Sbjct 69496130 GTCAGTGTAGCACGTGCGCAGCCCCGGGCATCGAAGGGCATCACAGAACTGTTGTTG-CT 69496188
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---------CCAGCCACCA 125
||| ||| |||||| | |||| | |||||||||||||| | | || |
Sbjct 69496189 CAACCTT-GGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCTGACAGC- 69496246
Query 126 ACCATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184
| ||| | || | ||| |||||| | | ||||| || |||||| |||||||||
Sbjct 69496247 TCGGGAGTTGCAT--GACTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCT 69496304
Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244
|| |||||||| | | |||||||||||||||||| |||||| || ||
Sbjct 69496305 GATAAATCACTTC-----------ATGGCCATGCACCACCACCCGCAGAATCGAG---GA 69496350
Query 245 G-CTATCAATCTG 256
| |||||||||||
Sbjct 69496351 GTCTATCAATCTG 69496363
>seq1187
Length=2414216
Score = 91.5 bits (100), Expect = 2e-16
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||| || | || |||||||| || ||||| | |||||||| | |||| |||||||
Sbjct 2124505 GTCTCATTTGACATAGGAATTAAGCAAACAAACCTTTCCACCAATTCAGAATGGCCATGT 2124564
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||| ||| |||||||||||| || ||||| |||||
Sbjct 2124565 ACCACCAGCCACAGAATCAAGAAAAAGATATCAGCCTGTC 2124604
>seq15
Length=79227551
Score = 86.0 bits (94), Expect = 1e-14
Identities = 74/93 (80%), Gaps = 8/93 (9%)
Strand=Plus/Plus
Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225
|| |||||||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct 27770944 TCCTTATCGGAATTAACCAGAAAAATCGCTCCATGAA--------GGCCATGCACCACCA 27770995
Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||| ||||| ||||||||||||||| | |||
Sbjct 27770996 TCCACGGAATCCAGAAAGAGCTATCAAGCAGTC 27771028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796109164938
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |