Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq6 208 1e-51 seq17 205 1e-50 seq11 154 2e-35 seq2 123 4e-26 seq10 111 3e-22 seq3 111 3e-22 seq7 109 9e-22 seq1187 91.5 2e-16 seq15 86.0 1e-14 >seq6 Length=124183866 Score = 208 bits (230), Expect = 1e-51 Identities = 183/223 (82%), Gaps = 9/223 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 22509713 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 22509771 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | |||| |||| | Sbjct 22509772 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACACCGACCACT 22509830 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | |||||||||||||||||||||||||||| Sbjct 22509831 CGGGGGTCGTGTAACTAGTTAGCATGCCAGAATCTCGTTCGTTATCGGAATTAACCAGAC 22509890 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 ||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 22509891 AAATCGCTCCACCAACTAAGAACAGCCATGCACCACCACCCAT 22509933 Score = 131 bits (144), Expect = 3e-28 Identities = 184/251 (73%), Gaps = 17/251 (7%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA--CCTGTTATTGCCT 74 ||||| || || ||| |||| ||||| |||||||||||||| ||||||| || | Sbjct 78083026 CAGTGCAGTGCTTATGCAGCCCCAGACATCCAAGGGCATCACAGATGCCTGTTAGCGC-T 78083084 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAAC--CA 129 || || || ||||| | |||| |||| |||||||||| | ||||||| | Sbjct 78083085 CAGTCTCAGAT-GGCTGAATGCCACATGTCCTTCTAAGAAGCTGGGGGACACCAACTGCT 78083143 Query 130 TAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | || |||| |||||| | | |||| ||||||||| |||||||||| || Sbjct 78083144 CAGGGGGTGCCTAGCTAGTTAGCATGACAGAGTCTTTTTCGTTATCAGAATTAACCAAAC 78083203 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||| ||||||||| |||| |||||||||||||| |||| |||| ||||||||| Sbjct 78083204 AAATTGCTCCACCAA----GAACAGCCATGCACCACCATCCATGGAATGGAGAAAGAGC- 78083258 Query 248 ATCAATCTGTC 258 |||||||||| Sbjct 78083259 -TCAATCTGTC 78083268 >seq17 Length=72096382 Score = 205 bits (226), Expect = 1e-50 Identities = 199/251 (79%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||| |||||| |||| | |||| |||||||||| |||||||||||||| | Sbjct 25512852 GTCAGTGTAGCGTGCGTGCAGCCCTGGACATATAAGGGCATCTTAGACCTGTTATTGC-T 25512794 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAACCA-- 129 ||| || | |||||| | |||| | |||||||||||||| | || |||| Sbjct 25512793 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGATGCCGACCACT 25512735 Query 130 TAGTCG--ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | |||||| | |||||||||||||| ||||| Sbjct 25512734 TGGGTGTCACGTAACTAGTTAGCATGCCAGAGTCTCGATTGTTATCGGAATTAATCAGAC 25512675 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||| Sbjct 25512674 AAATCACTCCACCAACTAAGAATGGCCATGCACCACCACCCACGGAATTGAGAAAGAGCT 25512615 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 25512614 ATCAATCTGTC 25512604 >seq11 Length=102031526 Score = 154 bits (170), Expect = 2e-35 Identities = 94/100 (94%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 91876570 GTCTCCTTCGTTATCGGAATTAACCAGACAAATCACTTTACCAACTAAGAACGGCCATGC 91876511 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||| |||||||||||||| |||||| Sbjct 91876510 ACCACCACCCACAGAATCGAGAAAGAGCTATCAGTCTGTC 91876471 Score = 86.0 bits (94), Expect = 1e-14 Identities = 78/97 (80%), Gaps = 5/97 (5%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| ||| |||| |||| | |||||||||||||||||||||||||| || Sbjct 88183826 GTCAGTGTAGTGCGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTT----GCT 88183881 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111 ||| | || |||||| | |||| | |||||||||| Sbjct 88183882 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAA 88183917 >seq2 Length=128023632 Score = 123 bits (136), Expect = 4e-26 Identities = 99/118 (84%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||| | | || | || |||||| ||||||||||||||| || ||||||| Sbjct 58603656 GCTAGTTAGCATGCCAGAGTTTTATTTGTTATCAGAATTAACCAGACAATTC-CTCCACC 58603598 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||| Sbjct 58603597 TTCTAAGAACGGCCATGCCCCACCACCCATGGAATTAAGAAAGAGTTATCAATCTGTC 58603540 >seq10 Length=107483571 Score = 111 bits (122), Expect = 3e-22 Identities = 82/95 (86%), Gaps = 8/95 (8%) Strand=Plus/Minus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 |||||||| |||||||||||||||||||||||||||| ||||| | ||||||||||| Sbjct 14164228 GTTCGTTACCGGAATTAACCAGACAAATCACTCCACC----AAGAATGTCCATGCACCAC 14164173 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| ||||||||||||||||||||| Sbjct 14164172 CAC----GGAATCGAGAAAGAGCTATCAATCTGTC 14164142 >seq3 Length=114358107 Score = 111 bits (122), Expect = 3e-22 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 |||||||||||||||||| |||||||||| ||||| ||||| | ||||||||||| ||| Sbjct 44160328 GGAATTAACCAGACAAATTGCTCCACCAACGAAGAATGGCCAAGTACCACCACCCACAGA 44160269 Query 234 ATCAAGAAAGAGCTATCAATCTGT 257 | ||||||||||||||| |||||| Sbjct 44160268 ACCAAGAAAGAGCTATCGATCTGT 44160245 >seq7 Length=111973123 Score = 109 bits (120), Expect = 9e-22 Identities = 179/253 (71%), Gaps = 30/253 (12%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| || | || |||| | |||| |||||||||||||| ||||| ||| || Sbjct 69496130 GTCAGTGTAGCACGTGCGCAGCCCCGGGCATCGAAGGGCATCACAGAACTGTTGTTG-CT 69496188 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---------CCAGCCACCA 125 ||| ||| |||||| | |||| | |||||||||||||| | | || | Sbjct 69496189 CAACCTT-GGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCTGACAGC- 69496246 Query 126 ACCATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 | ||| | || | ||| |||||| | | ||||| || |||||| ||||||||| Sbjct 69496247 TCGGGAGTTGCAT--GACTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCT 69496304 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 || |||||||| | | |||||||||||||||||| |||||| || || Sbjct 69496305 GATAAATCACTTC-----------ATGGCCATGCACCACCACCCGCAGAATCGAG---GA 69496350 Query 245 G-CTATCAATCTG 256 | ||||||||||| Sbjct 69496351 GTCTATCAATCTG 69496363 >seq1187 Length=2414216 Score = 91.5 bits (100), Expect = 2e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| || | || |||||||| || ||||| | |||||||| | |||| ||||||| Sbjct 2124505 GTCTCATTTGACATAGGAATTAAGCAAACAAACCTTTCCACCAATTCAGAATGGCCATGT 2124564 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| ||| |||||||||||| || ||||| ||||| Sbjct 2124565 ACCACCAGCCACAGAATCAAGAAAAAGATATCAGCCTGTC 2124604 >seq15 Length=79227551 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/93 (80%), Gaps = 8/93 (9%) Strand=Plus/Plus Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 || |||||||||||||||||| ||||| ||||| || ||||||||||||||| Sbjct 27770944 TCCTTATCGGAATTAACCAGAAAAATCGCTCCATGAA--------GGCCATGCACCACCA 27770995 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| ||||||||||||||| | ||| Sbjct 27770996 TCCACGGAATCCAGAAAGAGCTATCAAGCAGTC 27771028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796109164938