Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24]
89,498 sequences; 2,828,873,048 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq49879 91.5 9e-17
seq6 82.4 5e-14
seq11 71.6 8e-11
>seq49879
Length=269
Score = 91.5 bits (100), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||
Sbjct 80 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 23
Query 109 TAATACAACGCAAGCT 124
|||| |||||||||||
Sbjct 22 TAAT-CAACGCAAGCT 8
>seq6
Length=124183866
Score = 82.4 bits (90), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| |||| ||| ||||||| |||| |||||| |||||||||||||||||||
Sbjct 22509515 CTCACTAAACCATCCAATT-GGTAGTA-GCGATGGGCGGTGTGTACAAAGGGCAGGGACT 22509572
Query 109 TAATACAACGCAAGCT 124
|||| |||||||||||
Sbjct 22509573 TAAT-CAACGCAAGCT 22509587
>seq11
Length=102031526
Score = 71.6 bits (78), Expect = 8e-11
Identities = 63/76 (83%), Gaps = 7/76 (9%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|| ||||| ||||| || | ||||||| ||||||||||| |||||||||||||||||||
Sbjct 88183633 CTTACTAAACCATT-CAATAGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 88183690
Query 109 TAATACAACGCAAGCT 124
| ||||||||||
Sbjct 88183691 T-----AACGCAAGCT 88183701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300547615640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |