Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq49879 91.5 9e-17 seq6 82.4 5e-14 seq11 71.6 8e-11 >seq49879 Length=269 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 80 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 23 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 22 TAAT-CAACGCAAGCT 8 >seq6 Length=124183866 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| ||| ||||||| |||| |||||| ||||||||||||||||||| Sbjct 22509515 CTCACTAAACCATCCAATT-GGTAGTA-GCGATGGGCGGTGTGTACAAAGGGCAGGGACT 22509572 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 22509573 TAAT-CAACGCAAGCT 22509587 >seq11 Length=102031526 Score = 71.6 bits (78), Expect = 8e-11 Identities = 63/76 (83%), Gaps = 7/76 (9%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 || ||||| ||||| || | ||||||| ||||||||||| ||||||||||||||||||| Sbjct 88183633 CTTACTAAACCATT-CAATAGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 88183690 Query 109 TAATACAACGCAAGCT 124 | |||||||||| Sbjct 88183691 T-----AACGCAAGCT 88183701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300547615640