Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6 197 3e-48 seq11 131 3e-28 seq17 118 2e-24 seq4 113 9e-23 seq22 109 1e-21 seq7 84.2 4e-14 >seq6 Length=124183866 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 22509811 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 22509754 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 22509753 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 22509694 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 22509693 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 22509634 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 22509633 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 22509574 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 22509573 AAGTCCCTGCCCTTTGTA 22509556 >seq11 Length=102031526 Score = 131 bits (144), Expect = 3e-28 Identities = 156/210 (74%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 119 AACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCA 178 |||||||||||||||||||||||||| | |||| |||| ||| |||||||||| | | || Sbjct 88183878 AACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACACGCACTACACTGACTG-GTCA 88183820 Query 179 ACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGG 238 | || | | ||| || || ||| ||||||| | | || | | | ||| |||| Sbjct 88183819 GCATGTGCCTACCCTGTGCTGGCAGGCGTGGGTAACCCGTTGAACCCCATTAGTGATGGG 88183760 Query 239 GATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAG 298 ||| | |||||| ||||| | | | |||||||||| || |||||| || ||||| || Sbjct 88183759 GATCAGGGATTGCAGTTATTCCCCATGAACGAGGAATTCCCAGTAAGTACGGGTCATAAG 88183700 Query 299 CACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||| ||| |||||||||||||||| Sbjct 88183699 CTTGCG----TTAAGTCCCTGCCCTTTGTA 88183674 >seq17 Length=72096382 Score = 118 bits (130), Expect = 2e-24 Identities = 163/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| ||||||||||||| | Sbjct 25512754 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTAAG 25512811 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||| |||| | |||| |||||| |||||||||||| | || | || | | Sbjct 25512812 ATGCCCTTATATGTCCAGGGCTGCACGCACGCTACACTGACTGGCTCACCATGTGCCTAC 25512871 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| ||||| || | || | | ||||| ||||||| | |||| Sbjct 25512872 CCTACGCCGGCAGGCGCAGGTAACCTGTTGAACCCCATTCGTGATGGGGATCAGGGATTG 25512931 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 |||||||| | | | || ||||||| || |||||| | | |||| Sbjct 25512932 CAATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGTGGGTCA 25512975 >seq4 Length=118086705 Score = 113 bits (124), Expect = 9e-23 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||| ||||||||||| | |||| ||| || ||| ||||||| | Sbjct 103566045 GCAATAACAGGTCTGTGATACCCTTAGATGTCCAGGGCTGCAGGCATGCTCCACTGACTG 103566104 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 ||| | || | | || ||| | ||| ||| | || | || | | || | Sbjct 103566105 GCTCAATGTGTGCCTACCCAACGCCTGCAGGCACAGGTGACCTGTTGAACCCCATTCATA 103566164 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCT-TCAACGAGGAATGCCTAGTAAGCGCGTGT 292 ||||||| | ||||||||| || |||| || ||||||| || |||||| | || Sbjct 103566165 ATGGGGATCTGGGATTGCAATT-TTTCTCTAGGAATGAGGAATTCCCAGTAAGTAAGGGT 103566223 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| | |||||||| |||||||||||||||| Sbjct 103566224 CATAAGCTTGTGTTGATTAAGTCCCTGCCCTTTGTA 103566259 >seq22 Length=61117494 Score = 109 bits (120), Expect = 1e-21 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||| | | |||||||||||| | | | |||||||||| || |||||| || Sbjct 31402939 TCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGC 31402880 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| |||||||||| |||||||||||||||| Sbjct 31402879 GGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA 31402840 >seq7 Length=111973123 Score = 84.2 bits (92), Expect = 4e-14 Identities = 127/174 (73%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| ||| ||||| |||||| Sbjct 69496228 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGGTTGAG-CAACAACAGTTCTGTG 69496171 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||| |||| | |||| || | || ||||||||||| | || | || | | Sbjct 69496170 ATGCCCTTCGATGCCCGGGGCTGCGCACGTGCTACACTGACTGGCTCAGCATGTGCCTAC 69496111 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT-GTCGTGCTGGGGATAG 243 ||| ||| | ||| ||||||| || ||| ||| || | ||| ||||||||| Sbjct 69496110 CCTATGCCAGCAGGCGTGGGTAA-CTAGTTGAACCCTCTTTGTGATGGGGATAG 69496058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946352274944