Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24]
89,498 sequences; 2,828,873,048 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq6 197 3e-48
seq11 131 3e-28
seq17 118 2e-24
seq4 113 9e-23
seq22 109 1e-21
seq7 84.2 4e-14
>seq6
Length=124183866
Score = 197 bits (218), Expect = 3e-48
Identities = 201/258 (78%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 22509811 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 22509754
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||||| | || || || | |
Sbjct 22509753 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 22509694
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| ||| |||||| | | || | | ||||| ||||||| | | ||||
Sbjct 22509693 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 22509634
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||||
Sbjct 22509633 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 22509574
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 22509573 AAGTCCCTGCCCTTTGTA 22509556
>seq11
Length=102031526
Score = 131 bits (144), Expect = 3e-28
Identities = 156/210 (74%), Gaps = 5/210 (2%)
Strand=Plus/Minus
Query 119 AACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCA 178
|||||||||||||||||||||||||| | |||| |||| ||| |||||||||| | | ||
Sbjct 88183878 AACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACACGCACTACACTGACTG-GTCA 88183820
Query 179 ACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGG 238
| || | | ||| || || ||| ||||||| | | || | | | ||| ||||
Sbjct 88183819 GCATGTGCCTACCCTGTGCTGGCAGGCGTGGGTAACCCGTTGAACCCCATTAGTGATGGG 88183760
Query 239 GATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAG 298
||| | |||||| ||||| | | | |||||||||| || |||||| || ||||| ||
Sbjct 88183759 GATCAGGGATTGCAGTTATTCCCCATGAACGAGGAATTCCCAGTAAGTACGGGTCATAAG 88183700
Query 299 CACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||| ||| ||||||||||||||||
Sbjct 88183699 CTTGCG----TTAAGTCCCTGCCCTTTGTA 88183674
>seq17
Length=72096382
Score = 118 bits (130), Expect = 2e-24
Identities = 163/224 (73%), Gaps = 3/224 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||| |
Sbjct 25512754 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTAAG 25512811
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
||||||||| |||| | |||| |||||| |||||||||||| | || | || | |
Sbjct 25512812 ATGCCCTTATATGTCCAGGGCTGCACGCACGCTACACTGACTGGCTCACCATGTGCCTAC 25512871
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| ||| ||||| || | || | | ||||| ||||||| | ||||
Sbjct 25512872 CCTACGCCGGCAGGCGCAGGTAACCTGTTGAACCCCATTCGTGATGGGGATCAGGGATTG 25512931
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294
|||||||| | | | || ||||||| || |||||| | | ||||
Sbjct 25512932 CAATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGTGGGTCA 25512975
>seq4
Length=118086705
Score = 113 bits (124), Expect = 9e-23
Identities = 156/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173
||||||||||||||||||| ||||||||||| | |||| ||| || ||| ||||||| |
Sbjct 103566045 GCAATAACAGGTCTGTGATACCCTTAGATGTCCAGGGCTGCAGGCATGCTCCACTGACTG 103566104
Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233
||| | || | | || ||| | ||| ||| | || | || | | || |
Sbjct 103566105 GCTCAATGTGTGCCTACCCAACGCCTGCAGGCACAGGTGACCTGTTGAACCCCATTCATA 103566164
Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCT-TCAACGAGGAATGCCTAGTAAGCGCGTGT 292
||||||| | ||||||||| || |||| || ||||||| || |||||| | ||
Sbjct 103566165 ATGGGGATCTGGGATTGCAATT-TTTCTCTAGGAATGAGGAATTCCCAGTAAGTAAGGGT 103566223
Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||| ||| | |||||||| ||||||||||||||||
Sbjct 103566224 CATAAGCTTGTGTTGATTAAGTCCCTGCCCTTTGTA 103566259
>seq22
Length=61117494
Score = 109 bits (120), Expect = 1e-21
Identities = 84/100 (84%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288
||||| ||||||| | | |||||||||||| | | | |||||||||| || |||||| ||
Sbjct 31402939 TCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGC 31402880
Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||||| ||| |||||||||| ||||||||||||||||
Sbjct 31402879 GGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA 31402840
>seq7
Length=111973123
Score = 84.2 bits (92), Expect = 4e-14
Identities = 127/174 (73%), Gaps = 5/174 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | ||| ||||| ||| ||||| ||||||
Sbjct 69496228 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGGTTGAG-CAACAACAGTTCTGTG 69496171
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||| |||| | |||| || | || ||||||||||| | || | || | |
Sbjct 69496170 ATGCCCTTCGATGCCCGGGGCTGCGCACGTGCTACACTGACTGGCTCAGCATGTGCCTAC 69496111
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT-GTCGTGCTGGGGATAG 243
||| ||| | ||| ||||||| || ||| ||| || | ||| |||||||||
Sbjct 69496110 CCTATGCCAGCAGGCGTGGGTAA-CTAGTTGAACCCTCTTTGTGATGGGGATAG 69496058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946352274944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |