Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq65918 473 4e-131 seq3 351 3e-94 seq4 322 2e-85 seq2 226 9e-57 seq22 168 2e-39 seq10 159 1e-36 seq15 113 1e-22 seq11 111 5e-22 seq30 102 3e-19 seq5 102 3e-19 seq13 96.9 1e-17 seq8 91.5 5e-16 seq28 87.8 6e-15 seq1 86.0 2e-14 seq14 82.4 2e-13 >seq65918 Length=375 Score = 473 bits (524), Expect = 4e-131 Identities = 283/297 (95%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 74 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 133 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 134 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 193 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 194 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 253 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 254 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 313 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 314 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 370 >seq3 Length=114358107 Score = 351 bits (388), Expect = 3e-94 Identities = 258/298 (87%), Gaps = 3/298 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | |||||||||||| |||| Sbjct 84465298 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCTTCCCACACTAGAGTCAAGTTCAA 84465357 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | | Sbjct 84465358 TAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGATGG 84465417 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||| ||||||||||||||| | |||||||| || | ||||||||| ||||| Sbjct 84465418 ATAGTAGGTAGAGACAGTGGGAATCTC--TCATCCATTCGTGTGAGTCACTAATCAGATG 84465475 Query 417 ACGAGGCA-TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 || ||||| |||||||| |||||||||||||| |||||||| ||| ||| | | |||| Sbjct 84465476 ACAAGGCATTTTGGCTATCTTAAGAGAGTCATGGTTACTCCTGCCACTTAGCGGTGCTTC 84465535 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 84465536 ATGGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCATCAACA 84465593 >seq4 Length=118086705 Score = 322 bits (356), Expect = 2e-85 Identities = 253/300 (84%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| ||||||||||||| || ||||| | | ||||||||||||||||| Sbjct 78229271 CTCCCACTTACTCTACACCTCTCATATCTCTTCACTGTGCCA-ACTAGAGTCAAGCTCAA 78229329 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || |||||||||||| | |||||| |||||||| |||||||||||||||||||| || | Sbjct 78229330 CAATGTCTTCTTTCCCAGATGATTCTGCCAAGCCTGTTCCCTTGGCTGTGGTTTC-CTGG 78229388 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||| ||||||||| ||| |||||||||| || ||| |||||| ||| Sbjct 78229389 ATAGTAGGTAGGGACAATGGGAATCTGGTTCATCCATTCATCTGCATCAGTAATTACATG 78229448 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||| |||||||| |||||||||||||| ||||||||| || ||||| || ||| Sbjct 78229449 ATGAGGCTTTTGGCTATCTTAAGAGAGTCATCGTTACTCCCACCAGTTACCTGCCCTTCA 78229508 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||||| ||| |||||||||| |||||| ||||||||||||| ||||||| || Sbjct 78229509 TTGAATTTCTTTACTATGACATTCAGTGCACTGAGCAGAAATCACATCAGGTCAACACCA 78229568 Score = 113 bits (124), Expect = 1e-22 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||||||||||| | |||||||||| |||| | |||||||| ||||| |||| Sbjct 15769975 CTTCTGCTCTACAGGAGGTCTCTGTTCTCCCTGAGCTCACCTTAGGATACCTGTGTTACC 15770034 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 15770035 ATTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 15770081 >seq2 Length=128023632 Score = 226 bits (250), Expect = 9e-57 Identities = 173/205 (84%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||| ||||| ||| ||||| | | | ||||||||||||| |||| Sbjct 81600157 CTCCCACTTATTCTACATGTCTCAGGTCTCTTCACCATGCCAGACTAGAGTCAAGTTCAA 81600216 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||| |||||||| |||| || ||||||||||||||||||| ||||| Sbjct 81600217 TAGGGTCTTCTTTCCCTGCTGATTCTGCCACACCTGTTCCCTTGGCTGTGGTTTTGCTAG 81600276 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||| ||||| |||| || ||||||| ||| |||||||| || || Sbjct 81600277 ATAGTAGGTAGGGACAATGGGAGTCTCCTTCATCCATTTATGGATGTCACTAACTATATA 81600336 Query 417 ACGAGGCATTTGGCTACCTTAAGAG 441 | ||||||| | ||||||||||||| Sbjct 81600337 AAGAGGCATCTAGCTACCTTAAGAG 81600361 Score = 226 bits (250), Expect = 9e-57 Identities = 173/205 (84%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||| ||||| ||| ||||| | | | ||||||||||||| |||| Sbjct 94676995 CTCCCACTTATTCTACATGTCTCAGGTCTCTTCACCATGCCAGACTAGAGTCAAGTTCAA 94677054 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||| |||||||| |||| || ||||||||||||||||||| ||||| Sbjct 94677055 TAGGGTCTTCTTTCCCTGCTGATTCTGCCACACCTGTTCCCTTGGCTGTGGTTTTGCTAG 94677114 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||| ||||| |||| || ||||||| ||| |||||||| || || Sbjct 94677115 ATAGTAGGTAGGGACAATGGGAGTCTCCTTCATCCATTTATGGATGTCACTAACTATATA 94677174 Query 417 ACGAGGCATTTGGCTACCTTAAGAG 441 | ||||||| | ||||||||||||| Sbjct 94677175 AAGAGGCATCTAGCTACCTTAAGAG 94677199 >seq22 Length=61117494 Score = 168 bits (186), Expect = 2e-39 Identities = 124/144 (86%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || || || |||||||||||||||||||||| || ||||||||| ||||| ||||| ||| Sbjct 27699706 GACAGGAGGTAGGGACAGTGGGAATCTCGTTCATTCATTCATGCACGTCATTAATTGGAT 27699647 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 || |||||||||||||||||||||||| |||||||||||||| |||||||| | || Sbjct 27699646 GATGAGGCATTTGGCTACCTTAAGAGATTCATAGTTACTCCCACCGTTTAC---CACTCC 27699590 Query 476 GTTGAATTTCTTCACTTTGACATT 499 ||||||||||||||| |||||| Sbjct 27699589 ACTGAATTTCTTCACTTCGACATT 27699566 >seq10 Length=107483571 Score = 159 bits (176), Expect = 1e-36 Identities = 123/146 (84%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||| ||||||||| || ||||| | | ||||||| || ||||| Sbjct 78965716 CTCCCACTTATTCTGCACCTCTCATTTCTCTTCACCATGCTAGACTAGAAGCAGTCTCAA 78965775 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||| |||| |||| ||||||| ||||||||| ||||||||||||||||||| || | Sbjct 78965776 CAGGGTTTTCTCTCCCTGCTGATTGAGCCAAGCCCATTCCCTTGGCTGTGGTTTCACTGG 78965835 Query 357 ATAGTAGATAGGGACAGTGGGAATCT 382 ||||||| |||||||||||||||||| Sbjct 78965836 ATAGTAGGTAGGGACAGTGGGAATCT 78965861 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || | |||| ||||||| ||| ||||| ||||||||||||||||||| Sbjct 80737560 CTTCTGTTCCATGGGAGGTTTCTGTCCTCTCTGAGTTTGCCTTAGGACACCTGCGTTACT 80737619 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| ||| ||| | ||||||| || |||||||||||| || |||| Sbjct 80737620 GTTTGACAAGTGTACTGCCCCAGTCAGACTCCCCACCTGGCACTGTC 80737666 >seq15 Length=79227551 Score = 113 bits (124), Expect = 1e-22 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||| ||| ||||||| | ||||||| |||||| ||| | || ||| || | ||||||| Sbjct 4393547 TTTTGCTGGATAGTAAAAAGGGACAATGGGAAACTCACTCATTCATACACACACGTCACT 4393606 Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449 |||||||||| ||||||||||||||||| ||||||||||||| Sbjct 4393607 AATTAGATGATGAGGCATTTGGCTACCTCAAGAGAGTCATAG 4393648 >seq11 Length=102031526 Score = 111 bits (122), Expect = 5e-22 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 ||||||| ||||||||||||||||| ||||| | |||||||| | | |||||| | Sbjct 52180150 TAGATGATAAGGCATTTGGCTACCTTGAGAGATTGTTAGTTACTTTCATCATTTACCAGA 52180209 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 ||| ||| ||||||||||||||||||||||| |||| ||| ||||||| | ||| Sbjct 52180210 ACTTCATTGTATTTCTTCACTTTGACATTCAGAACACTAGGCGGAAATCATACTGC 52180265 Score = 105 bits (116), Expect = 2e-20 Identities = 115/149 (77%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||| |||||| | | || |||||| | ||| || |||||||||||| || || |||| Sbjct 39106474 AGTGAGAATCTTGGTCATGTATTCATACATGTCTCTGATTAGATGACGAAGCGTT-GGCT 39106416 Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 ||||||||||| ||||||||||| ||| |||| ||| ||||||||||||||| Sbjct 39106415 ACCTTAAGAGATTCATAGTTACTGT-GCCATTTATTTAA-CTTCATTGAATTTCTTCACT 39106358 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCA 520 ||||||| | | |||||||| ||| || Sbjct 39106357 CTGACATTGAATGTACTGGGCAAAAACCA 39106329 >seq30 Length=123478542 Score = 102 bits (112), Expect = 3e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318 || ||| ||||| | |||||||||||||||||||| ||||||||||||||| ||||| Sbjct 119267600 CATGTCTCTTCACTGTGCCGGACTAGAGTCAAGCTCAATAGGGTCTTCTTTCCCTGCTGA 119267659 Query 319 TTCCGCCAAGCCCGTTCCCTTGGC 342 ||||||||| || ||||||||||| Sbjct 119267660 TTCCGCCAAACCTGTTCCCTTGGC 119267683 >seq5 Length=114008975 Score = 102 bits (112), Expect = 3e-19 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||| ||||| ||| ||||| | | | ||||||||||||| |||| Sbjct 40390159 CTCCCACTTATTCTACATGTCTCAGGTCTCTTCACCATGCCAGACTAGAGTCAAGTTCAA 40390218 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCC 325 ||||||||||||||| |||||||| ||| Sbjct 40390219 TAGGGTCTTCTTTCCCTGCTGATTCTGCC 40390247 >seq13 Length=83176210 Score = 96.9 bits (106), Expect = 1e-17 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 || ||| | ||| ||| ||||||| |||| | || | ||| |||||||||| |||| | Sbjct 73819565 TTCTGCCCCACAAGAGGTTTCTGTCCTCCCTAAGCTCGCCTCAGGACACCTGTGTTACCG 73819624 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 73819625 TTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 73819670 >seq8 Length=117296131 Score = 91.5 bits (100), Expect = 5e-16 Identities = 75/89 (84%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 |||||| ||| || ||||||||||| || |||||||| |||||| ||| ||||| ||| Sbjct 14591105 TGGGAAGCTC-TTCATCCATTCATGTGCC-CACTAATTGGATGACCAGGAATTTGAGTAC 14591162 Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGT 462 ||| | ||||||||||||||||| ||||| Sbjct 14591163 CTTTAAAGAGTCATAGTTACTCCTGCCGT 14591191 >seq28 Length=38539107 Score = 87.8 bits (96), Expect = 6e-15 Identities = 115/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 |||| | ||||||| || |||| || | || | ||||| || ||| ||||||||| Sbjct 13326670 GTCAGGTTCAACAGAGTTCTCTTCATCCACAGACTTTGCCAAACCA-TTCTCTTGGCTGT 13326728 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||||| ||| | ||| | || ||| ||||| | || ||||||||||| ||| Sbjct 13326729 AGTTTCATCAGAAAATAGGTGAAGAGAGTAGGAATACCATTCTTCCATTCATGCATGTCT 13326788 Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 ||||||||||| |||| |||| || |||||| ||||| Sbjct 13326789 CTAATTAGATGCTGAGGAATTTAGCCACCTTAGGAGAG 13326826 >seq1 Length=157394656 Score = 86.0 bits (94), Expect = 2e-14 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||| | |||| ||||||| ||| |||| | ||||||||||||||||||| Sbjct 120745633 CTTCTGCTTCATGGGAGGTTTCTGTCTTCCCTGAGCTCGCCTTAGGACACCTGCGTTA-C 120745575 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| | | || |||||| ||||||||||||||| || |||| Sbjct 120745574 CTTTGACAGGTATACCACCCCAGTCAAACTCCCCACCTGGCACTGTC 120745528 >seq14 Length=93702490 Score = 82.4 bits (90), Expect = 2e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| ||| |||| | |||||||||||| | |||| Sbjct 74227200 CTTCTGCTCCATGGGAGGTTTCTGTCCTCTCTGAGCTCGCCTTAGGACACCCGTGTTACA 74227259 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 |||| |||| ||| || |||||| ||||||||||| Sbjct 74227260 GTTTGACAGGTGTACCACCCCAGTCAAACTCCCCA 74227294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633736528704