Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24]
89,498 sequences; 2,828,873,048 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq10704 89.7 8e-16
seq15 86.0 1e-14
seq7 84.2 4e-14
seq10 77.0 5e-12
seq5095 73.4 6e-11
>seq10704
Length=99533
Score = 89.7 bits (98), Expect = 8e-16
Identities = 89/113 (79%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||| | | ||||| | || | || |||| || || |
Sbjct 66368 GTACGAGAGGAACCGCAGG-TTCACAC-ATTTGGTGTATGTGCTTGGCTGAGGAGTCAAT 66425
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
| |||||||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct 66426 GGGGCGAAGCTACCATCTGTGAGATTATGACTGAACACCTCTAAGTCAGAATC 66478
>seq15
Length=79227551
Score = 86.0 bits (94), Expect = 1e-14
Identities = 76/94 (81%), Gaps = 1/94 (1%)
Strand=Plus/Plus
Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80
|||||| | ||||| | || | || |||| || || || ||||||||||||||||
Sbjct 17052651 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGT 17052709
Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
|||||||| ||||||||||||||||||||||||
Sbjct 17052710 GGGATTATGACTGAACGCCTCTAAGTCAGAATCC 17052743
>seq7
Length=111973123
Score = 84.2 bits (92), Expect = 4e-14
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90
||||| |||| | || |||| || || || || ||||||| ||||| ||||||||
Sbjct 9308638 TTGGTGTTTGTGCTTGGCTGAGGAGCCAATGGGGCAAAGCTACTATCTGTGGGATTATGA 9308697
Query 91 CTGAACGCCTCTAAGTCAGAATCCATGCCAG 121
||||||||||||||||||||||||| ||||
Sbjct 9308698 CTGAACGCCTCTAAGTCAGAATCCAGCCCAG 9308728
>seq10
Length=107483571
Score = 77.0 bits (84), Expect = 5e-12
Identities = 87/114 (76%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||| |||| |||||| | ||||| | || | || |||| || | |
Sbjct 78965105 GTAGGAGAGGAACTGCGGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGTAAAT 78965048
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| | ||||||||||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 78965047 GGGTCAAAGCTACCATCTGTGGGATTATGACTGAATGCCTCCAAGTCAGAATCC 78964994
>seq5095
Length=385923
Score = 73.4 bits (80), Expect = 6e-11
Identities = 86/114 (75%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| |||||||| | | ||||| | ||||| | || | || |||| || || |
Sbjct 68392 GTACAGGAGGAACCACAGG-TTCAGGC-ATTTGGTGTATGTGCTTGGCTGAGAAGCCAAT 68335
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||| | |||||||| || || ||||||||||||||||||
Sbjct 68334 GGGGCGAAGCTACCATCCGTGGGATTATGACTAAATGCCTCTAAGTCAGAATCC 68281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 818489743872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |