Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq10704 89.7 8e-16 seq15 86.0 1e-14 seq7 84.2 4e-14 seq10 77.0 5e-12 seq5095 73.4 6e-11 >seq10704 Length=99533 Score = 89.7 bits (98), Expect = 8e-16 Identities = 89/113 (79%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||| | | ||||| | || | || |||| || || | Sbjct 66368 GTACGAGAGGAACCGCAGG-TTCACAC-ATTTGGTGTATGTGCTTGGCTGAGGAGTCAAT 66425 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| ||||||| |||||| |||||||||||||||| Sbjct 66426 GGGGCGAAGCTACCATCTGTGAGATTATGACTGAACACCTCTAAGTCAGAATC 66478 >seq15 Length=79227551 Score = 86.0 bits (94), Expect = 1e-14 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || || || |||||||||||||||| Sbjct 17052651 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGT 17052709 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||| |||||||||||||||||||||||| Sbjct 17052710 GGGATTATGACTGAACGCCTCTAAGTCAGAATCC 17052743 >seq7 Length=111973123 Score = 84.2 bits (92), Expect = 4e-14 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| |||| | || |||| || || || || ||||||| ||||| |||||||| Sbjct 9308638 TTGGTGTTTGTGCTTGGCTGAGGAGCCAATGGGGCAAAGCTACTATCTGTGGGATTATGA 9308697 Query 91 CTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||||||||||||||||||||||| |||| Sbjct 9308698 CTGAACGCCTCTAAGTCAGAATCCAGCCCAG 9308728 >seq10 Length=107483571 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| |||| |||||| | ||||| | || | || |||| || | | Sbjct 78965105 GTAGGAGAGGAACTGCGGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGTAAAT 78965048 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||||||||||||| |||||||| ||||| ||||| |||||||||||| Sbjct 78965047 GGGTCAAAGCTACCATCTGTGGGATTATGACTGAATGCCTCCAAGTCAGAATCC 78964994 >seq5095 Length=385923 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||| | | ||||| | ||||| | || | || |||| || || | Sbjct 68392 GTACAGGAGGAACCACAGG-TTCAGGC-ATTTGGTGTATGTGCTTGGCTGAGAAGCCAAT 68335 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| | |||||||| || || |||||||||||||||||| Sbjct 68334 GGGGCGAAGCTACCATCCGTGGGATTATGACTAAATGCCTCTAAGTCAGAATCC 68281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818489743872