Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24]
89,498 sequences; 2,828,873,048 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq12 266 1e-68
seq2 242 1e-61
seq8 214 5e-53
seq14 208 2e-51
seq11 205 3e-50
seq1 179 1e-42
seq3 172 2e-40
seq30 134 4e-29
seq21 111 5e-22
seq9 109 2e-21
seq15 107 6e-21
seq5 107 6e-21
seq7683 93.3 1e-16
seq28 86.0 2e-14
seq23 86.0 2e-14
seq13 78.8 3e-12
seq3852 77.0 1e-11
seq29 77.0 1e-11
>seq12
Length=84961321
Score = 266 bits (294), Expect = 1e-68
Identities = 188/214 (88%), Gaps = 1/214 (0%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 53413725 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 53413784
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 53413785 CCCGGGTCGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 53413844
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||||
Sbjct 53413845 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCCCCCGTGGTCACCATGGTAG 53413904
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215
|| |||||||||||||||||||||||||
Sbjct 53413905 GCACGGCGACTACCATCGAAAGTTGATAGGGCAG 53413938
>seq2
Length=128023632
Score = 242 bits (268), Expect = 1e-61
Identities = 181/212 (85%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85
|||||| ||||||| ||||| | |||||||||||| | ||||||| |||||||||||
Sbjct 32252197 AAAGAGTCCTGTATTGTTATTTTTCTTCACTACCTCCCGGGGTCGGGAGTGGGTAATTTG 32252138
Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 32252137 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCTGGAATCGA 32252078
Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTT 205
||||| ||||||||| |||||| | ||||| |||||| |||||||||||||||
Sbjct 32252077 ACCCTGATTCCCCGTCACCCGTGGTCACCATAGTAGGCACGGCGACTACCATCGAAAGTT 32252018
Query 206 GATAGGGCAGAAATTTGAATGAACCATCGCCG 237
||||||||||| || ||||| | ||||||
Sbjct 32252017 GATAGGGCAGACGTTCGAATGGGTCGTCGCCG 32251986
Score = 118 bits (130), Expect = 3e-24
Identities = 122/153 (80%), Gaps = 10/153 (7%)
Strand=Plus/Minus
Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGT-ACT-ATCAAATAAACGATAACTGAT 413
||||||||||||| |||||||| |||| | || | | | |||| ||| |||||||||
Sbjct 61640041 TCTAGAATTACCA--GTTATCCAAGTAGAAGAGTGAGTGACCAAAGGAACCATAACTGAT 61639984
Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT--ACTTAGACATGCATGGCT 471
||||||||| | | |||||||||||| | || ||| |||||||||||||| | |
Sbjct 61639983 TTAATGAGCAAGCCACAGTTTCACTGTTTCA---GCCTATGCACTTAGACATGCATAGGT 61639927
Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||| || || |||||||
Sbjct 61639926 TAATCTTTGAGACAAGCATGTG-CTGCTGGCAG 61639895
>seq8
Length=117296131
Score = 214 bits (236), Expect = 5e-53
Identities = 152/172 (88%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 29046268 GTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 29046209
Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC 186
|||||||||||||||||||||||| ||||||| | |||||| | |||||||||||| ||
Sbjct 29046208 GCTCCCTCTCCGGAATCGAACCCTGATTCCCCATCACCCGTGGTCACCATGGTAGGC-AC 29046150
Query 187 TATC-CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237
| ||||||| |||||||||||||||||| || ||||| | ||||||
Sbjct 29046149 AACGACTACCATTGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCG 29046098
>seq14
Length=93702490
Score = 208 bits (230), Expect = 2e-51
Identities = 156/182 (86%), Gaps = 1/182 (1%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| | ||| | |||||||||||
Sbjct 89041350 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTTTTTTTCGTCACTACCTC 89041291
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89041290 CCCGGGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 89041231
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|| |||||||||||||||||||||||||| |||||||| | | | | ||||| |||
Sbjct 89041230 CTAAGGCTCCCTCTCCGGAATCGAACCCTGCTTCCCCGTCAGACATGGTCCCCATGCTAG 89041171
Query 182 GC 183
||
Sbjct 89041170 GC 89041169
>seq11
Length=102031526
Score = 205 bits (226), Expect = 3e-50
Identities = 181/221 (82%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 8 TTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66
||||||| ||| | | | ||||| ||||||| ||||| | ||||||||||| | |
Sbjct 34440565 TTCCAATGACAGGGTCTCGAAAGAATCCTGTATTGTTATTTTTCATCACTACCTCCTCCT 34440624
Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126
||||||| |||||||||||| | |||||||||||||||||||||| ||||| ||||||||
Sbjct 34440625 GTCGGGAGTGGGTAATTTGCACACCTGCTGCCTTCCTTGGATGTGCTAGCCATTTCTCAG 34440684
Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG-CCA 185
|||||||||| ||||||||||||| ||||||| | |||| | | |||| | |||| ||
Sbjct 34440685 GCTCCCTCTCTGGAATCGAACCCTGATTCCCCATCACCCATGGTCACCAAGATAGGTACA 34440744
Query 186 CT-ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225
| || |||||||| ||||||||| |||||| ||||||||
Sbjct 34440745 GTGAT--TACCATCGCAAGTTGATAAGGCAGACATTTGAAT 34440783
>seq1
Length=157394656
Score = 179 bits (198), Expect = 1e-42
Identities = 141/166 (85%), Gaps = 6/166 (4%)
Strand=Plus/Minus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACT-ATCAAA 398
|||||||||||||||||||||||||| |||||||| |||| | || | | | ||||
Sbjct 98674758 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGTGACCAAA 98674699
Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458
||| ||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 98674698 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 98674639
Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 98674638 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 98674594
Score = 91.5 bits (100), Expect = 4e-16
Identities = 81/100 (81%), Gaps = 1/100 (1%)
Strand=Plus/Minus
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464
|||||||||||||||||| ||| |||||||| |||| | | |||||||||||
Sbjct 40497860 ATAACTGATTTAATGAGCTGTTCACAGTTTCAGTGTACCGGCCATATGTACTTAGACATT 40497801
Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||| ||||||||||||||||||| ||||| |||||| ||
Sbjct 40497800 CATAGCTTAATCTTTGAGACAAGTATATG-TTACTGGTAG 40497762
>seq3
Length=114358107
Score = 172 bits (190), Expect = 2e-40
Identities = 142/173 (82%), Gaps = 10/173 (6%)
Strand=Plus/Minus
Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA---------C 391
|| |||||||||||||||||||||||||| |||||||| |||| | | | |
Sbjct 62358122 TTGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGAGC 62358063
Query 392 TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT 451
| |||| ||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 62358062 GACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGC 62358003
Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 62358002 GTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 62357951
>seq30
Length=123478542
Score = 134 bits (148), Expect = 4e-29
Identities = 85/92 (92%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 92 TGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 81835961 TGTTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCAAACCCTG 81835902
Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGC 183
||||||||| |||||| | ||||||||||||
Sbjct 81835901 ATTCCCCGTCACCCGTGGTCACCATGGTAGGC 81835870
Score = 96.9 bits (106), Expect = 1e-17
Identities = 89/113 (79%), Gaps = 15/113 (13%)
Strand=Plus/Plus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA---CTGTATAGATTGCTT 451
|||| ||| ||||||||||||||||||||| | |||| || ||| |
Sbjct 11311962 CAAAGGAACCATAACTGATTTAATGAGCCATCCACAGTACCAGCCCTG-----------T 11312010
Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 11312011 GTACTTAGACATGCATGGCTTAATCTTTGAGATAAGCATATG-CTACTGGCAG 11312062
>seq21
Length=71175694
Score = 111 bits (122), Expect = 5e-22
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51233861 TGGGTAATTTGTGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 51233802
Query 135 TCCGGA 140
||| ||
Sbjct 51233801 TCCAGA 51233796
>seq9
Length=91317560
Score = 109 bits (120), Expect = 2e-21
Identities = 87/104 (84%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 34 CTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTG 93
|||||| || || |||||||| |||||| | ||| ||| | ||||||||| |||||
Sbjct 15074977 CTGTAT---TACTTTTTGTCACTCCCTCCCTGGGTCAGGAGAGAGTAATTTGCCTGCCTG 15075033
Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137
|||||||||||| | ||||||||| |||||||||||||||||||
Sbjct 15075034 CTGCCTTCCTTGAAGGTGGTAGCCATTTCTCAGGCTCCCTCTCC 15075077
>seq15
Length=79227551
Score = 107 bits (118), Expect = 6e-21
Identities = 93/112 (83%), Gaps = 5/112 (4%)
Strand=Plus/Minus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCTTA 452
||||| | | ||||||||||||||||| || | ||| ||||||||| | | ||| |
Sbjct 16594867 CAAATGAGCCATAACTGATTTAATGAGTTATCCACAGATTCACTGTACTGGGAGTGC--A 16594810
Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||| ||| ||||||||||||||||||||||||| || ||||||||||
Sbjct 16594809 TACTTAGATATGTATGGCTTAATCTTTGAGACAAGCATGTG-CTACTGGCAG 16594759
Score = 77.0 bits (84), Expect = 1e-11
Identities = 79/100 (79%), Gaps = 5/100 (5%)
Strand=Plus/Minus
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464
|||||||||||||||| ||| |||||||||||||| || || |||| | |||
Sbjct 1453319 ATAACTGATTTAATGAATTATTTGCAGTTTCACTGTA---ATGGC-CATACACACTTATG 1453264
Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||| ||||| |||||||| ||||||||| | |||||||
Sbjct 1453263 CATGACTTAACCTTTGAGATAAGCATATG-CCCCTGGCAG 1453225
>seq5
Length=114008975
Score = 107 bits (118), Expect = 6e-21
Identities = 94/114 (82%), Gaps = 5/114 (4%)
Strand=Plus/Plus
Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCT 450
|||||| | | |||||||||||||||||| ||| |||||||||||| | || | |||
Sbjct 33032609 ATCAAAGGAGCCATAACTGATTTAATGAGCTATTTGCAGTTTCACTGCACAGTTCATGC- 33032667
Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||| ||| |||||||||| | ||||| ||||||||| ||||||||||
Sbjct 33032668 -GTACTTAGATATGGATGGCTTAATATGTGAGAGAAGCATATG-CTACTGGCAG 33032719
>seq7683
Length=5699132
Score = 93.3 bits (102), Expect = 1e-16
Identities = 106/142 (75%), Gaps = 8/142 (6%)
Strand=Plus/Plus
Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149
|||||||||||||||| |||||| |||| || ||||||||||||||| || || |||||
Sbjct 3580422 CCTGCTGCCTTCCTTGAATGTGGGAGCCATTAATCAGGCTCCCTCTCCTGACTCAAACCC 3580481
Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209
| ||||||| | |||| ||| |||| | | |||||||| || | ||||
Sbjct 3580482 TGATTCCCCATCACCC----ATAAGTAGGTATGAGA----ACTACCATCAAAGGCTGATT 3580533
Query 210 GGGCAGAAATTTGAATGAACCA 231
|||| | | ||||||||| ||
Sbjct 3580534 AGGCAAACACTTGAATGAATCA 3580555
>seq28
Length=38539107
Score = 86.0 bits (94), Expect = 2e-14
Identities = 86/110 (78%), Gaps = 5/110 (5%)
Strand=Plus/Plus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| ||| ||||| |||| |||||||||| |||||||||||| || | | |
Sbjct 7712969 CAAAGGAACCATAACCGATTCTGTGAGCCATTC--AGTTTCACTGTACTGACTTTGTGTT 7713026
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||| |||||||| ||||| |||||||| ||||||||||
Sbjct 7713027 CTTAGACATGCACGGCTTAATATTTGAAACAAGCAT---GCTACTGGCAG 7713073
>seq23
Length=51751091
Score = 86.0 bits (94), Expect = 2e-14
Identities = 72/87 (83%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466
||||| || ||||||| || |||||||||||||| | ||| | |||||||||||
Sbjct 21602919 AACTGCTTGAATGAGCTGTTTGCAGTTTCACTGTACTGGTTGTGCGTT-TTAGACATGCA 21602861
Query 467 TGGCTTAATCTTTGAGACAAGCATATG 493
||||||||||||||||| |||||||||
Sbjct 21602860 TGGCTTAATCTTTGAGATAAGCATATG 21602834
>seq13
Length=83176210
Score = 78.8 bits (86), Expect = 3e-12
Identities = 72/91 (79%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85
|||||| | ||||| ||||| ||||||||||||| ||| ||| |||||||||||
Sbjct 13775684 AAAGAGTCTTGTATTGTTATTTTCCATCACTACCTCCCCTGGTCAGGAGTGGGTAATTTG 13775743
Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116
| | | ||||| |||||||| ||| ||||||
Sbjct 13775744 CACTCTTGCTGTCTTCCTTGAATGCGGTAGC 13775774
>seq3852
Length=24002
Score = 77.0 bits (84), Expect = 1e-11
Identities = 102/137 (74%), Gaps = 11/137 (8%)
Strand=Plus/Minus
Query 371 GTTATCCA--TGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428
|| ||||| || | ||| | || | | || ||| |||||||||| ||||| | ||
Sbjct 14180 GTAATCCAGCTGCAATAATGAACAACCGAAGGAACTGTAACTGATTTGTTGAGCTACACG 14121
Query 429 CAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487
||||||||||||| || || | | ||||| ||||||||||||||||||||||
Sbjct 14120 CAGTTTCACTGTACCAG---GC----AGGCATACATGAATGGCTTAATCTTTGAGACAAG 14068
Query 488 CATATGACTACTGGCAG 504
|||| | ||||||||||
Sbjct 14067 CATA-GGCTACTGGCAG 14052
>seq29
Length=49578892
Score = 77.0 bits (84), Expect = 1e-11
Identities = 84/110 (76%), Gaps = 5/110 (5%)
Strand=Plus/Minus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| |||| |||| |||| |||||||| | ||||||||| |||| | | |||
Sbjct 31776869 CAAAGAAACCATAATTGATCTAATGAGCTGTCTGCAGTTTCATTGTACTGGCCACACATA 31776810
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 31776809 CTTTC----GCATGGCTGAATCTTTGAGACAAGCATATG-TTACTGGCAG 31776765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1509048222208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |