Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq12 266 1e-68 seq2 242 1e-61 seq8 214 5e-53 seq14 208 2e-51 seq11 205 3e-50 seq1 179 1e-42 seq3 172 2e-40 seq30 134 4e-29 seq21 111 5e-22 seq9 109 2e-21 seq15 107 6e-21 seq5 107 6e-21 seq7683 93.3 1e-16 seq28 86.0 2e-14 seq23 86.0 2e-14 seq13 78.8 3e-12 seq3852 77.0 1e-11 seq29 77.0 1e-11 >seq12 Length=84961321 Score = 266 bits (294), Expect = 1e-68 Identities = 188/214 (88%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 53413725 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 53413784 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 53413785 CCCGGGTCGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 53413844 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| ||||| | |||||||||| Sbjct 53413845 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCCCCCGTGGTCACCATGGTAG 53413904 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 || ||||||||||||||||||||||||| Sbjct 53413905 GCACGGCGACTACCATCGAAAGTTGATAGGGCAG 53413938 >seq2 Length=128023632 Score = 242 bits (268), Expect = 1e-61 Identities = 181/212 (85%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||| ||||||| ||||| | |||||||||||| | ||||||| ||||||||||| Sbjct 32252197 AAAGAGTCCTGTATTGTTATTTTTCTTCACTACCTCCCGGGGTCGGGAGTGGGTAATTTG 32252138 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 32252137 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCTGGAATCGA 32252078 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTT 205 ||||| ||||||||| |||||| | ||||| |||||| ||||||||||||||| Sbjct 32252077 ACCCTGATTCCCCGTCACCCGTGGTCACCATAGTAGGCACGGCGACTACCATCGAAAGTT 32252018 Query 206 GATAGGGCAGAAATTTGAATGAACCATCGCCG 237 ||||||||||| || ||||| | |||||| Sbjct 32252017 GATAGGGCAGACGTTCGAATGGGTCGTCGCCG 32251986 Score = 118 bits (130), Expect = 3e-24 Identities = 122/153 (80%), Gaps = 10/153 (7%) Strand=Plus/Minus Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGT-ACT-ATCAAATAAACGATAACTGAT 413 ||||||||||||| |||||||| |||| | || | | | |||| ||| ||||||||| Sbjct 61640041 TCTAGAATTACCA--GTTATCCAAGTAGAAGAGTGAGTGACCAAAGGAACCATAACTGAT 61639984 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT--ACTTAGACATGCATGGCT 471 ||||||||| | | |||||||||||| | || ||| |||||||||||||| | | Sbjct 61639983 TTAATGAGCAAGCCACAGTTTCACTGTTTCA---GCCTATGCACTTAGACATGCATAGGT 61639927 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||| || || ||||||| Sbjct 61639926 TAATCTTTGAGACAAGCATGTG-CTGCTGGCAG 61639895 >seq8 Length=117296131 Score = 214 bits (236), Expect = 5e-53 Identities = 152/172 (88%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29046268 GTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 29046209 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC 186 |||||||||||||||||||||||| ||||||| | |||||| | |||||||||||| || Sbjct 29046208 GCTCCCTCTCCGGAATCGAACCCTGATTCCCCATCACCCGTGGTCACCATGGTAGGC-AC 29046150 Query 187 TATC-CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 | ||||||| |||||||||||||||||| || ||||| | |||||| Sbjct 29046149 AACGACTACCATTGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCG 29046098 >seq14 Length=93702490 Score = 208 bits (230), Expect = 2e-51 Identities = 156/182 (86%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| | ||| | ||||||||||| Sbjct 89041350 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTTTTTTTCGTCACTACCTC 89041291 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89041290 CCCGGGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 89041231 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 || |||||||||||||||||||||||||| |||||||| | | | | ||||| ||| Sbjct 89041230 CTAAGGCTCCCTCTCCGGAATCGAACCCTGCTTCCCCGTCAGACATGGTCCCCATGCTAG 89041171 Query 182 GC 183 || Sbjct 89041170 GC 89041169 >seq11 Length=102031526 Score = 205 bits (226), Expect = 3e-50 Identities = 181/221 (82%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 8 TTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66 ||||||| ||| | | | ||||| ||||||| ||||| | ||||||||||| | | Sbjct 34440565 TTCCAATGACAGGGTCTCGAAAGAATCCTGTATTGTTATTTTTCATCACTACCTCCTCCT 34440624 Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||||||| |||||||||||| | |||||||||||||||||||||| ||||| |||||||| Sbjct 34440625 GTCGGGAGTGGGTAATTTGCACACCTGCTGCCTTCCTTGGATGTGCTAGCCATTTCTCAG 34440684 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG-CCA 185 |||||||||| ||||||||||||| ||||||| | |||| | | |||| | |||| || Sbjct 34440685 GCTCCCTCTCTGGAATCGAACCCTGATTCCCCATCACCCATGGTCACCAAGATAGGTACA 34440744 Query 186 CT-ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225 | || |||||||| ||||||||| |||||| |||||||| Sbjct 34440745 GTGAT--TACCATCGCAAGTTGATAAGGCAGACATTTGAAT 34440783 >seq1 Length=157394656 Score = 179 bits (198), Expect = 1e-42 Identities = 141/166 (85%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACT-ATCAAA 398 |||||||||||||||||||||||||| |||||||| |||| | || | | | |||| Sbjct 98674758 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGTGACCAAA 98674699 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 98674698 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 98674639 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 98674638 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 98674594 Score = 91.5 bits (100), Expect = 4e-16 Identities = 81/100 (81%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||||||||||||||||| ||| |||||||| |||| | | ||||||||||| Sbjct 40497860 ATAACTGATTTAATGAGCTGTTCACAGTTTCAGTGTACCGGCCATATGTACTTAGACATT 40497801 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||| ||||| |||||| || Sbjct 40497800 CATAGCTTAATCTTTGAGACAAGTATATG-TTACTGGTAG 40497762 >seq3 Length=114358107 Score = 172 bits (190), Expect = 2e-40 Identities = 142/173 (82%), Gaps = 10/173 (6%) Strand=Plus/Minus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA---------C 391 || |||||||||||||||||||||||||| |||||||| |||| | | | | Sbjct 62358122 TTGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGAGC 62358063 Query 392 TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT 451 | |||| ||| ||||||||||||||||||||||||||||||||||||| | | Sbjct 62358062 GACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGC 62358003 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 62358002 GTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 62357951 >seq30 Length=123478542 Score = 134 bits (148), Expect = 4e-29 Identities = 85/92 (92%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 92 TGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151 || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 81835961 TGTTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCAAACCCTG 81835902 Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 ||||||||| |||||| | |||||||||||| Sbjct 81835901 ATTCCCCGTCACCCGTGGTCACCATGGTAGGC 81835870 Score = 96.9 bits (106), Expect = 1e-17 Identities = 89/113 (79%), Gaps = 15/113 (13%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA---CTGTATAGATTGCTT 451 |||| ||| ||||||||||||||||||||| | |||| || ||| | Sbjct 11311962 CAAAGGAACCATAACTGATTTAATGAGCCATCCACAGTACCAGCCCTG-----------T 11312010 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 11312011 GTACTTAGACATGCATGGCTTAATCTTTGAGATAAGCATATG-CTACTGGCAG 11312062 >seq21 Length=71175694 Score = 111 bits (122), Expect = 5e-22 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51233861 TGGGTAATTTGTGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 51233802 Query 135 TCCGGA 140 ||| || Sbjct 51233801 TCCAGA 51233796 >seq9 Length=91317560 Score = 109 bits (120), Expect = 2e-21 Identities = 87/104 (84%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 34 CTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTG 93 |||||| || || |||||||| |||||| | ||| ||| | ||||||||| ||||| Sbjct 15074977 CTGTAT---TACTTTTTGTCACTCCCTCCCTGGGTCAGGAGAGAGTAATTTGCCTGCCTG 15075033 Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 |||||||||||| | ||||||||| ||||||||||||||||||| Sbjct 15075034 CTGCCTTCCTTGAAGGTGGTAGCCATTTCTCAGGCTCCCTCTCC 15075077 >seq15 Length=79227551 Score = 107 bits (118), Expect = 6e-21 Identities = 93/112 (83%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCTTA 452 ||||| | | ||||||||||||||||| || | ||| ||||||||| | | ||| | Sbjct 16594867 CAAATGAGCCATAACTGATTTAATGAGTTATCCACAGATTCACTGTACTGGGAGTGC--A 16594810 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||| ||||||||||||||||||||||||| || |||||||||| Sbjct 16594809 TACTTAGATATGTATGGCTTAATCTTTGAGACAAGCATGTG-CTACTGGCAG 16594759 Score = 77.0 bits (84), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||||||||||||||| ||| |||||||||||||| || || |||| | ||| Sbjct 1453319 ATAACTGATTTAATGAATTATTTGCAGTTTCACTGTA---ATGGC-CATACACACTTATG 1453264 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||| |||||||| ||||||||| | ||||||| Sbjct 1453263 CATGACTTAACCTTTGAGATAAGCATATG-CCCCTGGCAG 1453225 >seq5 Length=114008975 Score = 107 bits (118), Expect = 6e-21 Identities = 94/114 (82%), Gaps = 5/114 (4%) Strand=Plus/Plus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCT 450 |||||| | | |||||||||||||||||| ||| |||||||||||| | || | ||| Sbjct 33032609 ATCAAAGGAGCCATAACTGATTTAATGAGCTATTTGCAGTTTCACTGCACAGTTCATGC- 33032667 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||| |||||||||| | ||||| ||||||||| |||||||||| Sbjct 33032668 -GTACTTAGATATGGATGGCTTAATATGTGAGAGAAGCATATG-CTACTGGCAG 33032719 >seq7683 Length=5699132 Score = 93.3 bits (102), Expect = 1e-16 Identities = 106/142 (75%), Gaps = 8/142 (6%) Strand=Plus/Plus Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 |||||||||||||||| |||||| |||| || ||||||||||||||| || || ||||| Sbjct 3580422 CCTGCTGCCTTCCTTGAATGTGGGAGCCATTAATCAGGCTCCCTCTCCTGACTCAAACCC 3580481 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209 | ||||||| | |||| ||| |||| | | |||||||| || | |||| Sbjct 3580482 TGATTCCCCATCACCC----ATAAGTAGGTATGAGA----ACTACCATCAAAGGCTGATT 3580533 Query 210 GGGCAGAAATTTGAATGAACCA 231 |||| | | ||||||||| || Sbjct 3580534 AGGCAAACACTTGAATGAATCA 3580555 >seq28 Length=38539107 Score = 86.0 bits (94), Expect = 2e-14 Identities = 86/110 (78%), Gaps = 5/110 (5%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||| |||| |||||||||| |||||||||||| || | | | Sbjct 7712969 CAAAGGAACCATAACCGATTCTGTGAGCCATTC--AGTTTCACTGTACTGACTTTGTGTT 7713026 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||| |||||||| ||||| |||||||| |||||||||| Sbjct 7713027 CTTAGACATGCACGGCTTAATATTTGAAACAAGCAT---GCTACTGGCAG 7713073 >seq23 Length=51751091 Score = 86.0 bits (94), Expect = 2e-14 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 ||||| || ||||||| || |||||||||||||| | ||| | ||||||||||| Sbjct 21602919 AACTGCTTGAATGAGCTGTTTGCAGTTTCACTGTACTGGTTGTGCGTT-TTAGACATGCA 21602861 Query 467 TGGCTTAATCTTTGAGACAAGCATATG 493 ||||||||||||||||| ||||||||| Sbjct 21602860 TGGCTTAATCTTTGAGATAAGCATATG 21602834 >seq13 Length=83176210 Score = 78.8 bits (86), Expect = 3e-12 Identities = 72/91 (79%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||| | ||||| ||||| ||||||||||||| ||| ||| ||||||||||| Sbjct 13775684 AAAGAGTCTTGTATTGTTATTTTCCATCACTACCTCCCCTGGTCAGGAGTGGGTAATTTG 13775743 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116 | | | ||||| |||||||| ||| |||||| Sbjct 13775744 CACTCTTGCTGTCTTCCTTGAATGCGGTAGC 13775774 >seq3852 Length=24002 Score = 77.0 bits (84), Expect = 1e-11 Identities = 102/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 371 GTTATCCA--TGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428 || ||||| || | ||| | || | | || ||| |||||||||| ||||| | || Sbjct 14180 GTAATCCAGCTGCAATAATGAACAACCGAAGGAACTGTAACTGATTTGTTGAGCTACACG 14121 Query 429 CAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 ||||||||||||| || || | | ||||| |||||||||||||||||||||| Sbjct 14120 CAGTTTCACTGTACCAG---GC----AGGCATACATGAATGGCTTAATCTTTGAGACAAG 14068 Query 488 CATATGACTACTGGCAG 504 |||| | |||||||||| Sbjct 14067 CATA-GGCTACTGGCAG 14052 >seq29 Length=49578892 Score = 77.0 bits (84), Expect = 1e-11 Identities = 84/110 (76%), Gaps = 5/110 (5%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| |||| |||| |||| |||||||| | ||||||||| |||| | | ||| Sbjct 31776869 CAAAGAAACCATAATTGATCTAATGAGCTGTCTGCAGTTTCATTGTACTGGCCACACATA 31776810 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| |||||||| ||||||||||||||||||||| ||||||||| Sbjct 31776809 CTTTC----GCATGGCTGAATCTTTGAGACAAGCATATG-TTACTGGCAG 31776765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509048222208