Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq25752 91.5 9e-17 seq25556 91.5 9e-17 seq24011 91.5 9e-17 seq13466 91.5 9e-17 seq518 91.5 9e-17 seq506 91.5 9e-17 seq461 91.5 9e-17 seq251 91.5 9e-17 seq138 91.5 9e-17 seq23927 82.4 5e-14 seq6 82.4 5e-14 seq11 77.0 2e-12 >seq25752 Length=14080 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 960 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 903 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 902 TAAT-CAACGCAAGCT 888 >seq25556 Length=14220 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 8855 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 8912 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 8913 TAAT-CAACGCAAGCT 8927 >seq24011 Length=15561 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1279 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 1336 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 1337 TAAT-CAACGCAAGCT 1351 >seq13466 Length=18931 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 12040 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 11983 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 11982 TAAT-CAACGCAAGCT 11968 Score = 82.4 bits (90), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 4/76 (5%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||| ||||| ||||||||||| ||||||||||||||||||| Sbjct 4135 CTCACTAAACCATC-CAATCG-TAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 4191 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 4192 TAAT-CAACGCAAGCT 4206 >seq518 Length=18578 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 10183 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 10126 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 10125 TAAT-CAACGCAAGCT 10111 >seq506 Length=19097 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 11029 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 11086 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 11087 TAAT-CAACGCAAGCT 11101 >seq461 Length=21300 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 13768 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 13711 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 13710 TAAT-CAACGCAAGCT 13696 >seq251 Length=33659 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 30311 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 30368 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 30369 TAAT-CAACGCAAGCT 30383 >seq138 Length=48371 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 6351 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 6294 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 6293 TAAT-CAACGCAAGCT 6279 >seq23927 Length=15647 Score = 82.4 bits (90), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 4/76 (5%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||| ||| ||||||||||||||||||| Sbjct 14297 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGG-CGGTGTGTACAAAGGGCAGGGACT 14241 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 14240 TAAT-CAACGCAAGCT 14226 >seq6 Length=117642375 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| ||| ||||||| |||| |||||| ||||||||||||||||||| Sbjct 19688335 CTCACTAAACCATCCAATT-GGTAGTA-GCGATGGGCGGTGTGTACAAAGGGCAGGGACT 19688392 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 19688393 TAAT-CAACGCAAGCT 19688407 >seq11 Length=106225002 Score = 77.0 bits (84), Expect = 2e-12 Identities = 64/76 (84%), Gaps = 7/76 (9%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 || ||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 95471708 CTTACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 95471765 Query 109 TAATACAACGCAAGCT 124 | |||||||||| Sbjct 95471766 T-----AACGCAAGCT 95471776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300715662260