Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq29195 152 9e-35 >seq29195 Length=11775 Score = 152 bits (168), Expect = 9e-35 Identities = 154/199 (77%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 96 GCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACC 155 || |||||||| || | | || | |||||| || | |||||||||| || || || Sbjct 4935 GCCAGGAAGGCCTCCTGG-GGCACTTCCACCGATCCGATCTGCTTCATGCGCTTCTTGCC 4877 Query 156 GGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGC 215 |||||||||||| || |||||||||||||| ||| | | ||| ||||||||||| ||||| Sbjct 4876 GGCCTTTTGCTTTTCCAGCAGCTTGCGCTTGCGGGTGATGTCGCCGCCGTAGCACTTGGC 4817 Query 216 CAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGC 275 ||| |||||||| | | |||||||||| |||||||||||| | |||| ||||| Sbjct 4816 CAGCACGTTCTTGCGCATGGCCTTGACGGTTTCCCGCGCAATGATGTTGGCGCCGATGGC 4757 Query 276 GGCCTGGATCGCGACGTCG 294 |||||| || || || ||| Sbjct 4756 GGCCTGTATGGCCACATCG 4738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838149259712