Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq28 95.1 5e-14 >seq28 Length=44672302 Score = 95.1 bits (104), Expect = 5e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131 ||||| || ||||| |||| | ||||| ||||||||| | |||| ||| || ||||| Sbjct 11971271 GGCGTTGATGATCTCTTTGATGCGGGGCACGCCCAGGGTGATGTTCATGGAGGCCACGCC 11971212 Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186 ||||||||||| |||| ||||||| ||| ||| |||||||| |||| |||| Sbjct 11971211 CGCAAAGTGGAAAGTCTTCAGGGTCATCTGGGTGCCCGGCTCGCCAATGCTCTGG 11971157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2083920878624786