Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq74132 123 4e-26 seq35691 114 2e-23 seq28914 78.8 1e-12 >seq74132 Length=39836 Score = 123 bits (136), Expect = 4e-26 Identities = 171/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||||||| || |||||| ||||| | ||| || |||||| |||||| | Sbjct 30838 GTACAAAGGTCAGGGACTTAATCAACGTAAGCTT-ACGACCTGCACTTACTGGGAATT-C 30781 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || | | || ||||||||| | || || ||||||| ||||| | || Sbjct 30780 CTCATTCATGGGGAATAATTGCAATCCCCAATTCCTATCACGAATGGGGTTCAATGGGTT 30721 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||| ||| | || | ||| ||||||||||||| |||| Sbjct 30720 ACCCACACCTGCCGGCATAGGGTAAGCACACAATGAGCCAGTCAGTGTAGCGCGTGTGCA 30661 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 || | | ||||||||||| |||||||||||||||||| ||||| || ||||| Sbjct 30660 GCTCCGGACATCTAAGGGAATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 30608 >seq35691 Length=19888 Score = 114 bits (126), Expect = 2e-23 Identities = 171/235 (73%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||||||||||| || ||||| | ||||| ||| | || |||| | |||||| | Sbjct 5476 GTAGAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGGCCCGTACTTAGTGGGAATT-C 5419 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | || ||||||||| |||||||| || | |||||| || || Sbjct 5418 CTCATTCGTGGAGAATAATTGCAATCCCTGATCCCCATTACAAATGCGTTTCAACAGGTT 5359 Query 120 ACCCGGACCTGTCGGCC-AAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| | |||| ||| ||||| | || | |||| | |||||||||| || | | Sbjct 5358 ACCTGTGCCTGCAGGCATAAGGT-AGGCACACATTGAGTCAGTCAGTGTAGCATGCATAC 5300 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 5299 AGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGAGTGGC 5246 >seq28914 Length=37945 Score = 78.8 bits (86), Expect = 1e-12 Identities = 62/73 (85%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||| | |||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 2901 TCAGTGTAGCACATGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 2959 Query 221 AAACTTCCGTGGC 233 | ||| ||||| Sbjct 2960 AGTCTTGGGTGGC 2972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729500197365