Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq74132 123 4e-26
seq35691 114 2e-23
seq28914 78.8 1e-12
>seq74132
Length=39836
Score = 123 bits (136), Expect = 4e-26
Identities = 171/234 (73%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||| ||||||| || |||||| ||||| | ||| || |||||| |||||| |
Sbjct 30838 GTACAAAGGTCAGGGACTTAATCAACGTAAGCTT-ACGACCTGCACTTACTGGGAATT-C 30781
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
||| || | | || ||||||||| | || || ||||||| ||||| | ||
Sbjct 30780 CTCATTCATGGGGAATAATTGCAATCCCCAATTCCTATCACGAATGGGGTTCAATGGGTT 30721
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| ||||| |||| ||| | || | ||| ||||||||||||| ||||
Sbjct 30720 ACCCACACCTGCCGGCATAGGGTAAGCACACAATGAGCCAGTCAGTGTAGCGCGTGTGCA 30661
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|| | | ||||||||||| |||||||||||||||||| ||||| || |||||
Sbjct 30660 GCTCCGGACATCTAAGGGAATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 30608
>seq35691
Length=19888
Score = 114 bits (126), Expect = 2e-23
Identities = 171/235 (73%), Gaps = 6/235 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||| ||||||||||||| || ||||| | ||||| ||| | || |||| | |||||| |
Sbjct 5476 GTAGAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGGCCCGTACTTAGTGGGAATT-C 5419
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
||| || | || ||||||||| |||||||| || | |||||| || ||
Sbjct 5418 CTCATTCGTGGAGAATAATTGCAATCCCTGATCCCCATTACAAATGCGTTTCAACAGGTT 5359
Query 120 ACCCGGACCTGTCGGCC-AAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||| | |||| ||| ||||| | || | |||| | |||||||||| || | |
Sbjct 5358 ACCTGTGCCTGCAGGCATAAGGT-AGGCACACATTGAGTCAGTCAGTGTAGCATGCATAC 5300
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 5299 AGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGAGTGGC 5246
>seq28914
Length=37945
Score = 78.8 bits (86), Expect = 1e-12
Identities = 62/73 (85%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
|||||||||| | |||| |||| | |||||||||||||||||||||||||||||| |||
Sbjct 2901 TCAGTGTAGCACATGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 2959
Query 221 AAACTTCCGTGGC 233
| ||| |||||
Sbjct 2960 AGTCTTGGGTGGC 2972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729500197365
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |