Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq2094566 86.0 1e-14
seq1936995 82.4 1e-13
seq2161497 77.0 6e-12
seq1778901 73.4 7e-11
seq1778900 73.4 7e-11
seq679827 73.4 7e-11
seq56120 73.4 7e-11
>seq2094566
Length=127
Score = 86.0 bits (94), Expect = 1e-14
Identities = 95/125 (76%), Gaps = 4/125 (3%)
Strand=Plus/Minus
Query 88 ATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATA 144
|||||||||||||||||||||| || | |||| ||| |||||||| |||||
Sbjct 127 ATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATA 68
Query 145 GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTC 204
||| | ||||||||||||||||||||| | || | | |||||||| ||||| | |
Sbjct 67 GGA-GCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCC 9
Query 205 GGGGG 209
|||||
Sbjct 8 GGGGG 4
>seq1936995
Length=127
Score = 82.4 bits (90), Expect = 1e-13
Identities = 95/126 (75%), Gaps = 4/126 (3%)
Strand=Plus/Plus
Query 87 AATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAAT 143
||||||||||||||||||||||| || | |||| ||| |||||||| ||||
Sbjct 1 AATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT 60
Query 144 AGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGT 203
||| | ||||||||||||||||||||| | || | | |||||||| ||||| |
Sbjct 61 AGGCCC-GCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGC 119
Query 204 CGGGGG 209
||||||
Sbjct 120 CGGGGG 125
>seq2161497
Length=127
Score = 77.0 bits (84), Expect = 6e-12
Identities = 92/122 (75%), Gaps = 5/122 (4%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||| ||
Sbjct 7 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGGTTACTTTGAAAAAATTAGAGGGT 66
Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
|||||||||||| || | |||| ||| |||||||| ||||||||| ||||
Sbjct 67 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCGG 125
Query 155 TT 156
||
Sbjct 126 TT 127
>seq1778901
Length=127
Score = 73.4 bits (80), Expect = 7e-11
Identities = 60/72 (83%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || || | | | ||||||||||||||||||||||||
Sbjct 38 ATGCTCTTAGCTGAGTGTCCCGCGGGCCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 97
Query 98 TCAAAGCAGGCC 109
||||||||||||
Sbjct 98 TCAAAGCAGGCC 109
>seq1778900
Length=127
Score = 73.4 bits (80), Expect = 7e-11
Identities = 60/72 (83%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || || | | | ||||||||||||||||||||||||
Sbjct 38 ATGCTCTTAGCTGAGTGTCCCGCGGGTCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 97
Query 98 TCAAAGCAGGCC 109
||||||||||||
Sbjct 98 TCAAAGCAGGCC 109
>seq679827
Length=106
Score = 73.4 bits (80), Expect = 7e-11
Identities = 60/72 (83%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||
Sbjct 100 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGGTTACTTTGAAAAAATTAGAGTGT 41
Query 98 TCAAAGCAGGCC 109
||||||||||||
Sbjct 40 TCAAAGCAGGCC 29
>seq56120
Length=322
Score = 73.4 bits (80), Expect = 7e-11
Identities = 60/72 (83%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | ||| ||||||||||||||||||||
Sbjct 220 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTGCTTTGAAAAAATTAGAGTGT 279
Query 98 TCAAAGCAGGCC 109
||||||||||||
Sbjct 280 TCAAAGCAGGCC 291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 886933947328
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |