Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2094566 86.0 1e-14 seq1936995 82.4 1e-13 seq2161497 77.0 6e-12 seq1778901 73.4 7e-11 seq1778900 73.4 7e-11 seq679827 73.4 7e-11 seq56120 73.4 7e-11 >seq2094566 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 95/125 (76%), Gaps = 4/125 (3%) Strand=Plus/Minus Query 88 ATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATA 144 |||||||||||||||||||||| || | |||| ||| |||||||| ||||| Sbjct 127 ATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATA 68 Query 145 GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTC 204 ||| | ||||||||||||||||||||| | || | | |||||||| ||||| | | Sbjct 67 GGA-GCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCC 9 Query 205 GGGGG 209 ||||| Sbjct 8 GGGGG 4 >seq1936995 Length=127 Score = 82.4 bits (90), Expect = 1e-13 Identities = 95/126 (75%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 87 AATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAAT 143 ||||||||||||||||||||||| || | |||| ||| |||||||| |||| Sbjct 1 AATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT 60 Query 144 AGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGT 203 ||| | ||||||||||||||||||||| | || | | |||||||| ||||| | Sbjct 61 AGGCCC-GCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGC 119 Query 204 CGGGGG 209 |||||| Sbjct 120 CGGGGG 125 >seq2161497 Length=127 Score = 77.0 bits (84), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 5/122 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||| || Sbjct 7 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGGTTACTTTGAAAAAATTAGAGGGT 66 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 67 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCGG 125 Query 155 TT 156 || Sbjct 126 TT 127 >seq1778901 Length=127 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || || | | | |||||||||||||||||||||||| Sbjct 38 ATGCTCTTAGCTGAGTGTCCCGCGGGCCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 97 Query 98 TCAAAGCAGGCC 109 |||||||||||| Sbjct 98 TCAAAGCAGGCC 109 >seq1778900 Length=127 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || || | | | |||||||||||||||||||||||| Sbjct 38 ATGCTCTTAGCTGAGTGTCCCGCGGGTCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 97 Query 98 TCAAAGCAGGCC 109 |||||||||||| Sbjct 98 TCAAAGCAGGCC 109 >seq679827 Length=106 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | ||||||||||||||||||||||| Sbjct 100 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGGTTACTTTGAAAAAATTAGAGTGT 41 Query 98 TCAAAGCAGGCC 109 |||||||||||| Sbjct 40 TCAAAGCAGGCC 29 >seq56120 Length=322 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | ||| |||||||||||||||||||| Sbjct 220 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTGCTTTGAAAAAATTAGAGTGT 279 Query 98 TCAAAGCAGGCC 109 |||||||||||| Sbjct 280 TCAAAGCAGGCC 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 886933947328