Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1204 158 5e-36 seq97688 149 3e-33 seq1974099 145 3e-32 seq223402 140 1e-30 seq295917 125 3e-26 seq1641890 123 1e-25 seq2778716 120 1e-24 seq63881 111 6e-22 seq33480 111 6e-22 seq2294442 109 2e-21 seq2015288 109 2e-21 seq371448 109 2e-21 seq2255124 104 9e-20 seq1738563 98.7 4e-18 seq216799 96.9 1e-17 seq114680 89.7 2e-15 seq2710618 84.2 9e-14 seq2136027 84.2 9e-14 seq2018057 84.2 9e-14 seq1967911 84.2 9e-14 seq1651553 84.2 9e-14 seq2175776 80.6 1e-12 seq2001433 80.6 1e-12 seq2025559 77.0 1e-11 seq1855 75.2 5e-11 >seq1204 Length=25311 Score = 158 bits (174), Expect = 5e-36 Identities = 107/120 (89%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 14524 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGTGAAGCCAGAGGAAACTCTG 14583 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 14584 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 14643 >seq97688 Length=14902 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 5464 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 5405 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 5404 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCTGACCTGGGTATAGGGGCGA 5345 >seq1974099 Length=127 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 2 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 61 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 62 GGGCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 116 >seq223402 Length=9244 Score = 140 bits (154), Expect = 1e-30 Identities = 110/132 (83%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | ||| |||||||||||||||||||||||||||| |||| |||| Sbjct 8597 GAGCATGAGCACACGCGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 8656 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||| ||||||| || |||||| ||| ||||||||| | ||||| || Sbjct 8657 CCAGAGGAAACTCTAGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATTGGTCGTCCGATC 8716 Query 669 TGGGTATAGGGG 680 |||||||||||| Sbjct 8717 TGGGTATAGGGG 8728 >seq295917 Length=364 Score = 125 bits (138), Expect = 3e-26 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 |||| | |||||| |||| ||||||||||||| | || | | |||||| | | ||||| Sbjct 311 CTTCCAGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGAGTGGTAAACTCCATCTAAG 252 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| ||| ||||||||||| ||||||| ||| | ||||| ||||||| || Sbjct 251 GCTAAATACCGGCAGGAGACCGATAGTCAACAAGTACAGTAAGGGAAAGTTGAAAAGAAC 192 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| | |||||||| || || ||||||| ||| | ||| || || Sbjct 191 TTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 145 >seq1641890 Length=127 Score = 123 bits (136), Expect = 1e-25 Identities = 91/106 (86%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||||||||||||||||||| |||| |||||||||||||||||||||||||| || || Sbjct 127 AGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAG 68 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 67 CGGGCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 22 >seq2778716 Length=225 Score = 120 bits (132), Expect = 1e-24 Identities = 89/102 (87%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 225 GTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGG 166 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || | || | |||||| ||| ||||||||||| |||||||| Sbjct 165 TG--GTCT-GTAGCGGTCCTGACGTGCAAATCGGTCGTCAAA 127 >seq63881 Length=105063 Score = 111 bits (122), Expect = 6e-22 Identities = 96/118 (81%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT-AGGGTGAAGCCAGAGGAAACTCT 622 |||| ||| || ||| ||||||||||| |||| | |||| ||||||||||||||||| Sbjct 98972 TGTTAGGATCCAAAACATGGTGAACTAGGCCTNAGGCAGGGCGAAGCCAGAGGAAACTCC 99031 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 ||||||| || |||||| ||||||||||||||| ||||| | |||||||| ||| Sbjct 99032 AATGGAGGCCCGTAGCGGTCCTGGCGTGCAAATCGGTCGTCCGACCTGGGTATATGGG 99089 Score = 84.2 bits (92), Expect = 9e-14 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 |||| ||||||||||||||||| ||||||| || |||||| ||||||| ||||||| | Sbjct 99128 AGGGCGAAGCCAGAGGAAACTCCAATGGAGGCCCGTAGCGGTCCTGGCGTACAAATCGGT 99187 Query 660 CGTCAAATTTGGGTATAGGGG 680 |||| | |||||||| ||| Sbjct 99188 CGTCCGACCTGGGTATATGGG 99208 >seq33480 Length=9601 Score = 111 bits (122), Expect = 6e-22 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | |||| ||||| |||||||||||||||||||||| |||| |||||||||| Sbjct 1319 GAGCACACATGTTAGGACCAGAAAGATGGTGAACTATGCCTGGGAAGGGCGAAGCCAGAG 1260 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||| | | || ||| ||| ||||||||| || || | |||||| Sbjct 1259 GAAACTCTGGTGGAAGTCTGTAGTGGTCCTGATGTGCAAATCAGTCTTCCGACCTGGGTA 1200 Query 675 TAGGGGCGA 683 || ||| || Sbjct 1199 TAAGGGGGA 1191 >seq2294442 Length=137 Score = 109 bits (120), Expect = 2e-21 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 ||||||||||| |||| |||||||||||||||||||||||||| || |||||| ||| Sbjct 137 AACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTG 78 Query 646 GCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| |||| | ||||||||||||||| Sbjct 77 ACGTGCAAATCGGCCGTCCGACCTGGGTATAGGGGCGA 40 >seq2015288 Length=127 Score = 109 bits (120), Expect = 2e-21 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 ||||||||||| |||| |||||||||||||||||||||||||| || |||||| ||| Sbjct 1 AACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTG 60 Query 646 GCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||||||| ||||| | ||||||||||||||| Sbjct 61 ACGGGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 98 >seq371448 Length=8952 Score = 109 bits (120), Expect = 2e-21 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||| ||| | |||| ||||||||||||||||||| |||| Sbjct 578 GGACCCGAAAGATGGTGAACTATGACTGGACAGGGCGAAGCCAGAGGAAACTCTGCTGGA 637 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || || ||| | ||| | || |||||| || || | ||| ||||||||| Sbjct 638 GGTCCGTAGCAGCCCTGACATGTAAATCGGTCATCTGACCTGGTTATAGGGGC 690 >seq2255124 Length=132 Score = 104 bits (114), Expect = 9e-20 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||||| Sbjct 84 TGTTAGGACCCGAAAGATGGGGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 25 Query 624 GTGGAGGCTCGCAGCGGTTCTG 645 ||||||| || |||||| ||| Sbjct 24 GTGGAGGTCCGTAGCGGTCCTG 3 >seq1738563 Length=127 Score = 98.7 bits (108), Expect = 4e-18 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 124 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 65 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 64 CCCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTG--A 7 Query 160 AGAGAG 165 |||||| Sbjct 6 AGAGAG 1 >seq216799 Length=21368 Score = 96.9 bits (106), Expect = 1e-17 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 48 TTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCA 107 ||| || |||||||||| | || |||| |||||| | | ||||| |||||||| || Sbjct 2593 TTGCTTTGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATACCTGCAC 2534 Query 108 GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTT 167 ||| | |||| |||||| || | ||||| ||||||| ||||||||||||||||| Sbjct 2533 AAGATCAATAGTCACCAAGTACTGTAAGGGAAAGTTGAAAAGAACTTTGGAAAGAGAGTT 2474 Query 168 AAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 || || ||||||| || | ||| |||| Sbjct 2473 TAAGAGGGCGTGAAACCATTAAGAGGTAAGC 2443 >seq114680 Length=11566 Score = 89.7 bits (98), Expect = 2e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||||| ||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 11485 TGTTAGGACCCGGGAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 11544 Query 624 GTGGAGG 630 ||||||| Sbjct 11545 GTGGAGG 11551 >seq2710618 Length=200 Score = 84.2 bits (92), Expect = 9e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 |||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 59 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCT 1 >seq2136027 Length=127 Score = 84.2 bits (92), Expect = 9e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | | Sbjct 1 CAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCT 60 Query 670 GGGTATAGGGGCGA 683 ||| |||||||||| Sbjct 61 GGGAATAGGGGCGA 74 >seq2018057 Length=127 Score = 84.2 bits (92), Expect = 9e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | | Sbjct 1 CAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCT 60 Query 670 GGGTATAGGGGCGA 683 ||| |||||||||| Sbjct 61 GGGCATAGGGGCGA 74 >seq1967911 Length=127 Score = 84.2 bits (92), Expect = 9e-14 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 72 GGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAG 131 ||| |||||| | | ||||| |||||||| ||| ||||||||||| |||||| | Sbjct 120 GGGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCAACAAGTGCCG 61 Query 132 TGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 | | ||||| ||||||| |||||| | |||||||| || || ||||||| Sbjct 60 TAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAA 10 >seq1651553 Length=127 Score = 84.2 bits (92), Expect = 9e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | | Sbjct 127 CAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCT 68 Query 670 GGGTATAGGGGCGA 683 ||| |||||||||| Sbjct 67 GGGGATAGGGGCGA 54 >seq2175776 Length=127 Score = 80.6 bits (88), Expect = 1e-12 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 99 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGCGGTAAACTCCATCTAAGGCTAAAT 40 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA 128 | ||| ||||||||||| ||||||| Sbjct 39 ACCGGCACGAGACCGATAGTCAACAAGTA 11 >seq2001433 Length=127 Score = 80.6 bits (88), Expect = 1e-12 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 99 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGGGGTAAACTCCATCTAAGGCTAAAT 40 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA 128 | ||| ||||||||||| ||||||| Sbjct 39 ACCGGCACGAGACCGATAGTCAACAAGTA 11 >seq2025559 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 78/102 (76%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| || ||| | | ||||| ||||||| Sbjct 26 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGGAAACTCCATCTAAGGCTAAAT 85 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAG 141 | ||| ||||||||||| ||||||| || | ||||| Sbjct 86 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAG 127 >seq1855 Length=21409 Score = 75.2 bits (82), Expect = 5e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||||||| |||| |||||||| ||| | || | |||| ||||||||||||||||||||| Sbjct 9013 TGGGACCTGAAATATGGTGAAATATCCTTGGACAGGGATAAGCCAGAGGAAACTCTGGTG 9072 Query 627 GAGG 630 |||| Sbjct 9073 GAGG 9076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2013751439050