Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01000345.1
Length=193
Score E
Sequences producing significant alignments: (Bits) Value
seq2162529 221 1e-55
seq1960850 212 6e-53
seq1640909 206 3e-51
seq1389312 206 3e-51
seq1357360 206 3e-51
seq1091947 205 9e-51
seq1771633 196 5e-48
seq2031632 185 9e-45
seq956742 181 1e-43
seq2066633 178 1e-42
seq1942967 176 5e-42
seq819573 176 5e-42
seq547201 150 2e-34
seq238657 131 2e-28
seq1706822 95.1 1e-17
seq1985201 93.3 4e-17
seq1639501 93.3 4e-17
seq1579859 91.5 1e-16
seq2119664 89.7 5e-16
seq10722 77.0 3e-12
>seq2162529
Length=127
Score = 221 bits (244), Expect = 1e-55
Identities = 125/127 (98%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 6 TGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATAA 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATAA 68
Query 66 CTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCT 125
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 CTCATCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCT 8
Query 126 TAAACTT 132
|||||||
Sbjct 7 TAAACTT 1
>seq1960850
Length=127
Score = 212 bits (234), Expect = 6e-53
Identities = 122/125 (98%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 56 TAAAAGATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAG 115
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 TAAAAGACAACTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAG 60
Query 116 CCTACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCA 175
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTCCCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCA 120
Query 176 TCGCA 180
|||||
Sbjct 121 TCGCA 125
>seq1640909
Length=127
Score = 206 bits (228), Expect = 3e-51
Identities = 122/127 (96%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 127 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTTAACTAAAAG 68
Query 62 ATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACC 121
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TTATCTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACC 8
Query 122 ACCTTAA 128
|||||||
Sbjct 7 ACCTTAA 1
>seq1389312
Length=122
Score = 206 bits (228), Expect = 3e-51
Identities = 119/122 (98%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 64 AACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCAC 123
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AACTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCCC 60
Query 124 CTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCATTA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCAATA 120
Query 184 AC 185
||
Sbjct 121 AC 122
>seq1357360
Length=122
Score = 206 bits (228), Expect = 3e-51
Identities = 119/122 (98%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 64 AACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCAC 123
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AACTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCTC 60
Query 124 CTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCATTA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCAATA 120
Query 184 AC 185
||
Sbjct 121 AC 122
>seq1091947
Length=116
Score = 205 bits (226), Expect = 9e-51
Identities = 115/116 (99%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 6 TGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATAA 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 TGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATAA 57
Query 66 CTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACC 121
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 56 CTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACC 1
>seq1771633
Length=127
Score = 196 bits (216), Expect = 5e-48
Identities = 113/116 (97%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 78 TCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGGACA 137
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGGACA 60
Query 138 ACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCATTAACCAGAAGTA 193
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ACCGACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCAATAACCAGAAGTA 116
>seq2031632
Length=127
Score = 185 bits (204), Expect = 9e-45
Identities = 117/127 (92%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGCTAACTAAAAG 60
Query 62 ATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACC 121
|| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 61 TTAGCTCGTCATCAGCTCTCGGCCTTAAGATCCCGGATTTACCTAAGATCTCAGCCTACC 120
Query 122 ACCTTAA 128
|||||||
Sbjct 121 ACCTTAA 127
>seq956742
Length=113
Score = 181 bits (200), Expect = 1e-43
Identities = 108/113 (96%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGCTAACTAAAAG 60
Query 62 ATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCA 114
||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TTAACTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCA 113
>seq2066633
Length=127
Score = 178 bits (196), Expect = 1e-42
Identities = 104/108 (96%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 20 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCCCTTCGTCGTCTAAAA 79
Query 61 GATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAG 108
|| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 80 GACAACTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAG 127
>seq1942967
Length=127
Score = 176 bits (194), Expect = 5e-42
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 92 TCCCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGGACAACCAACGCCAAGCT 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGGACAACCAACGCCAAGCT 60
Query 152 GGCCTAGCCTTCTCCGTCCCTCCATCGCATTAACCAGAAGTA 193
||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GGCTTAGCCTTCTCCGTCCCTCCATCGCAATAACCAGAAGTA 102
>seq819573
Length=110
Score = 176 bits (194), Expect = 5e-42
Identities = 105/110 (95%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 66 CTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCT 125
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1 CTCGTCATCAGCTCTCGGCCTTAAGATCCCGGATTTACCTAAGATCTCAGCCTACCACCT 60
Query 126 TAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCA 175
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCA 110
>seq547201
Length=103
Score = 150 bits (166), Expect = 2e-34
Identities = 95/103 (92%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 26 TGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATAACTCGTCATCAGCTCCCGGCC 85
|||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |||||
Sbjct 103 TGGAAGCATGGCATCAACCACTTCGTTAACTAAAAGTTAACTCGTCATCAGCTCTCGGCC 44
Query 86 TTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCTTAA 128
||| |||||||||||||||||||| ||||||||||||||||
Sbjct 43 TTAAGATCCCGGATTTACCTAAGATCTCAGCCTACCACCTTAA 1
>seq238657
Length=586
Score = 131 bits (144), Expect = 2e-28
Identities = 138/178 (78%), Gaps = 9/178 (5%)
Strand=Plus/Plus
Query 5 CTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATA 64
||||||||||| |||||||| ||||||| ||| |||| | |||||| ||| ||||
Sbjct 398 CTGAAGCTTAGGAGCTTTTCCTGGAAGCGTGGTATCAGCAACTTCGCCAT---AAAGG-- 452
Query 65 ACTCGTCATCAGCTCCCGGCCTTAGA--ATCCCGGATTTACCTAAGATTCCAGCCTACCA 122
|||||| || | | ||| |||| | ||||||||||| || ||||| | | ||||||
Sbjct 453 -CTCGTC-TCGGTGCTCGGTCTTAAAGGATCCCGGATTTGCCAAAGATCCAAACCTACCG 510
Query 123 CCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180
|||| | |||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 511 CCTTTCCCCGGGACAACCAACGCCCGGTATGCCTAACCTTCTCCGTCCCTCCATCGCA 568
>seq1706822
Length=127
Score = 95.1 bits (104), Expect = 1e-17
Identities = 52/52 (100%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTC 52
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTC 1
>seq1985201
Length=127
Score = 93.3 bits (102), Expect = 4e-17
Identities = 51/51 (100%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGT 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGT 3
>seq1639501
Length=126
Score = 93.3 bits (102), Expect = 4e-17
Identities = 51/51 (100%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGT 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGT 126
>seq1579859
Length=125
Score = 91.5 bits (100), Expect = 1e-16
Identities = 50/50 (100%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCG 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCG 1
>seq2119664
Length=127
Score = 89.7 bits (98), Expect = 5e-16
Identities = 51/52 (98%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 142 ACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCATTAACCAGAAGTA 193
||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCAATAACCAGAAGTA 52
>seq10722
Length=3686
Score = 77.0 bits (84), Expect = 3e-12
Identities = 77/100 (77%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 94 CCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGGACAACCAACGCCAAGCTGG 153
|||||||||||||| | | |||||| ||||||| |||||||| |||| |||
Sbjct 1667 CCGGATTTACCTAAACTCTCCGCCTACATGCTTAAACCGGGACAACCGTCGCCCGGCTAA 1726
Query 154 CCTAGCCTTCTCCGTCCCTCCATCGCATTAACCAGAAGTA 193
| |||||||||||||||| || ||||| |||| |||||
Sbjct 1727 CATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTA 1766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 502889497758
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |