Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq2162529 221 1e-55 seq1960850 212 6e-53 seq1640909 206 3e-51 seq1389312 206 3e-51 seq1357360 206 3e-51 seq1091947 205 9e-51 seq1771633 196 5e-48 seq2031632 185 9e-45 seq956742 181 1e-43 seq2066633 178 1e-42 seq1942967 176 5e-42 seq819573 176 5e-42 seq547201 150 2e-34 seq238657 131 2e-28 seq1706822 95.1 1e-17 seq1985201 93.3 4e-17 seq1639501 93.3 4e-17 seq1579859 91.5 1e-16 seq2119664 89.7 5e-16 seq10722 77.0 3e-12 >seq2162529 Length=127 Score = 221 bits (244), Expect = 1e-55 Identities = 125/127 (98%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 6 TGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATAA 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 TGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATAA 68 Query 66 CTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCT 125 ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 CTCATCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCT 8 Query 126 TAAACTT 132 ||||||| Sbjct 7 TAAACTT 1 >seq1960850 Length=127 Score = 212 bits (234), Expect = 6e-53 Identities = 122/125 (98%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 56 TAAAAGATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAG 115 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 TAAAAGACAACTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAG 60 Query 116 CCTACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCA 175 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCTCCCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCA 120 Query 176 TCGCA 180 ||||| Sbjct 121 TCGCA 125 >seq1640909 Length=127 Score = 206 bits (228), Expect = 3e-51 Identities = 122/127 (96%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 127 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTTAACTAAAAG 68 Query 62 ATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACC 121 || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 67 TTATCTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACC 8 Query 122 ACCTTAA 128 ||||||| Sbjct 7 ACCTTAA 1 >seq1389312 Length=122 Score = 206 bits (228), Expect = 3e-51 Identities = 119/122 (98%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 64 AACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCAC 123 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 AACTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCCC 60 Query 124 CTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCATTA 183 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 61 CTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCAATA 120 Query 184 AC 185 || Sbjct 121 AC 122 >seq1357360 Length=122 Score = 206 bits (228), Expect = 3e-51 Identities = 119/122 (98%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 64 AACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCAC 123 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 AACTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCTC 60 Query 124 CTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCATTA 183 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 61 CTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCAATA 120 Query 184 AC 185 || Sbjct 121 AC 122 >seq1091947 Length=116 Score = 205 bits (226), Expect = 9e-51 Identities = 115/116 (99%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 6 TGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATAA 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 116 TGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATAA 57 Query 66 CTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACC 121 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 56 CTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACC 1 >seq1771633 Length=127 Score = 196 bits (216), Expect = 5e-48 Identities = 113/116 (97%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 78 TCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGGACA 137 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGGACA 60 Query 138 ACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCATTAACCAGAAGTA 193 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 ACCGACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCAATAACCAGAAGTA 116 >seq2031632 Length=127 Score = 185 bits (204), Expect = 9e-45 Identities = 117/127 (92%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGCTAACTAAAAG 60 Query 62 ATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACC 121 || |||||||||||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 61 TTAGCTCGTCATCAGCTCTCGGCCTTAAGATCCCGGATTTACCTAAGATCTCAGCCTACC 120 Query 122 ACCTTAA 128 ||||||| Sbjct 121 ACCTTAA 127 >seq956742 Length=113 Score = 181 bits (200), Expect = 1e-43 Identities = 108/113 (96%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGCTAACTAAAAG 60 Query 62 ATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCA 114 ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 61 TTAACTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCA 113 >seq2066633 Length=127 Score = 178 bits (196), Expect = 1e-42 Identities = 104/108 (96%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60 |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 20 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCCCTTCGTCGTCTAAAA 79 Query 61 GATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAG 108 || |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 80 GACAACTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAG 127 >seq1942967 Length=127 Score = 176 bits (194), Expect = 5e-42 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 92 TCCCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGGACAACCAACGCCAAGCT 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCCCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGGACAACCAACGCCAAGCT 60 Query 152 GGCCTAGCCTTCTCCGTCCCTCCATCGCATTAACCAGAAGTA 193 ||| ||||||||||||||||||||||||| |||||||||||| Sbjct 61 GGCTTAGCCTTCTCCGTCCCTCCATCGCAATAACCAGAAGTA 102 >seq819573 Length=110 Score = 176 bits (194), Expect = 5e-42 Identities = 105/110 (95%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 66 CTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCT 125 |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1 CTCGTCATCAGCTCTCGGCCTTAAGATCCCGGATTTACCTAAGATCTCAGCCTACCACCT 60 Query 126 TAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCA 175 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCA 110 >seq547201 Length=103 Score = 150 bits (166), Expect = 2e-34 Identities = 95/103 (92%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 26 TGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATAACTCGTCATCAGCTCCCGGCC 85 |||||||||||||||||||||||||| | ||||||| ||||||||||||||||| ||||| Sbjct 103 TGGAAGCATGGCATCAACCACTTCGTTAACTAAAAGTTAACTCGTCATCAGCTCTCGGCC 44 Query 86 TTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCTTAA 128 ||| |||||||||||||||||||| |||||||||||||||| Sbjct 43 TTAAGATCCCGGATTTACCTAAGATCTCAGCCTACCACCTTAA 1 >seq238657 Length=586 Score = 131 bits (144), Expect = 2e-28 Identities = 138/178 (78%), Gaps = 9/178 (5%) Strand=Plus/Plus Query 5 CTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATA 64 ||||||||||| |||||||| ||||||| ||| |||| | |||||| ||| |||| Sbjct 398 CTGAAGCTTAGGAGCTTTTCCTGGAAGCGTGGTATCAGCAACTTCGCCAT---AAAGG-- 452 Query 65 ACTCGTCATCAGCTCCCGGCCTTAGA--ATCCCGGATTTACCTAAGATTCCAGCCTACCA 122 |||||| || | | ||| |||| | ||||||||||| || ||||| | | |||||| Sbjct 453 -CTCGTC-TCGGTGCTCGGTCTTAAAGGATCCCGGATTTGCCAAAGATCCAAACCTACCG 510 Query 123 CCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180 |||| | |||||||||||||| | ||||| |||||||||||||||||||||| Sbjct 511 CCTTTCCCCGGGACAACCAACGCCCGGTATGCCTAACCTTCTCCGTCCCTCCATCGCA 568 >seq1706822 Length=127 Score = 95.1 bits (104), Expect = 1e-17 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTC 52 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTC 1 >seq1985201 Length=127 Score = 93.3 bits (102), Expect = 4e-17 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGT 51 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 53 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGT 3 >seq1639501 Length=126 Score = 93.3 bits (102), Expect = 4e-17 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGT 51 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGT 126 >seq1579859 Length=125 Score = 91.5 bits (100), Expect = 1e-16 Identities = 50/50 (100%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCG 50 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCG 1 >seq2119664 Length=127 Score = 89.7 bits (98), Expect = 5e-16 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 142 ACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCATTAACCAGAAGTA 193 ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCAATAACCAGAAGTA 52 >seq10722 Length=3686 Score = 77.0 bits (84), Expect = 3e-12 Identities = 77/100 (77%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 94 CCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGGACAACCAACGCCAAGCTGG 153 |||||||||||||| | | |||||| ||||||| |||||||| |||| ||| Sbjct 1667 CCGGATTTACCTAAACTCTCCGCCTACATGCTTAAACCGGGACAACCGTCGCCCGGCTAA 1726 Query 154 CCTAGCCTTCTCCGTCCCTCCATCGCATTAACCAGAAGTA 193 | |||||||||||||||| || ||||| |||| ||||| Sbjct 1727 CATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTA 1766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502889497758