Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01000357.1 Length=131 Score E Sequences producing significant alignments: (Bits) Value seq246124 147 1e-33 seq2991797 132 3e-29 seq2974776 118 7e-25 seq2955247 118 7e-25 seq2725994 91.5 9e-17 seq785530 87.8 1e-15 seq2645311 82.4 5e-14 >seq246124 Length=1720 Score = 147 bits (162), Expect = 1e-33 Identities = 111/131 (85%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 1 CTGGCGACCCTGCAGGGCTTCAGCATCGGTATCGCCCGCTAGTCGCCCAACTGGATGGTC 60 ||||||||| | | |||||||| ||| || | || |||| |||||||||||||||| || Sbjct 1025 CTGGCGACCATCCTGGGCTTCATCATTGGCGTGGCGCGCTTGTCGCCCAACTGGATGATC 1084 Query 61 AACAAGCTGGCGACTGTCTACGTCGAGGTGTTCCGTAACATCCCGCCGCTGTTGCAGATC 120 |||||||||||||| || || || || |||||||| ||||| ||||||||| |||| ||| Sbjct 1085 AACAAGCTGGCGACGGTGTATGTGGAAGTGTTCCGCAACATTCCGCCGCTGCTGCAAATC 1144 Query 121 CTGTTCTGGTA 131 ||||||||||| Sbjct 1145 CTGTTCTGGTA 1155 >seq2991797 Length=616 Score = 132 bits (146), Expect = 3e-29 Identities = 108/131 (82%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 1 CTGGCGACCCTGCAGGGCTTCAGCATCGGTATCGCCCGCTAGTCGCCCAACTGGATGGTC 60 ||||||||||||| ||||||| |||||| | || || |||||| ||||||||| || Sbjct 591 CTGGCGACCCTGCTCGGCTTCATCATCGGCGTGGCGCGACTGTCGCCGAACTGGATGATC 532 Query 61 AACAAGCTGGCGACTGTCTACGTCGAGGTGTTCCGTAACATCCCGCCGCTGTTGCAGATC 120 ||||||||||| || || || || || |||||||| ||||| ||||| ||| |||| ||| Sbjct 531 AACAAGCTGGCAACCGTGTATGTGGAAGTGTTCCGCAACATTCCGCCACTGCTGCAAATC 472 Query 121 CTGTTCTGGTA 131 ||||||||||| Sbjct 471 CTGTTCTGGTA 461 >seq2974776 Length=535 Score = 118 bits (130), Expect = 7e-25 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 39 CTAGTCGCCCAACTGGATGGTCAACAAGCTGGCGACTGTCTACGTCGAGGTGTTCCGTAA 98 || |||||||||||||||| |||||||||||||||| || || || || |||||||| || Sbjct 535 CTTGTCGCCCAACTGGATGATCAACAAGCTGGCGACGGTGTATGTGGAAGTGTTCCGCAA 476 Query 99 CATCCCGCCGCTGTTGCAGATCCTGTTCTGGTA 131 |||||||||| || |||| |||||||||||||| Sbjct 475 CATCCCGCCGTTGCTGCAAATCCTGTTCTGGTA 443 >seq2955247 Length=462 Score = 118 bits (130), Expect = 7e-25 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 24 CATCGGTATCGCCCGCTAGTCGCCCAACTGGATGGTCAACAAGCTGGCGACTGTCTACGT 83 |||||| | || || | |||||||||||||||| ||||||| |||||||| || || || Sbjct 460 CATCGGCGTGGCGCGTTTGTCGCCCAACTGGATGATCAACAAACTGGCGACGGTGTATGT 401 Query 84 CGAGGTGTTCCGTAACATCCCGCCGCTGTTGCAGATCCTGTTCTGGTA 131 || || ||||| |||||||| |||||| ||||||||||||||||||| Sbjct 400 GGAAGTATTCCGCAACATCCCACCGCTGCTGCAGATCCTGTTCTGGTA 353 >seq2725994 Length=205 Score = 91.5 bits (100), Expect = 9e-17 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 1 CTGGCGACCCTGCAGGGCTTCAGCATCGGTATCGCCCGCTAGTCGCCCAACTGGATGGTC 60 |||||||| | | |||||||| |||||| | || |||| |||||||||||||||| || Sbjct 116 CTGGCGACTATCCTGGGCTTCATCATCGGCGTGGCGCGCTTGTCGCCCAACTGGATGATC 175 Query 61 AACAAGCTGGCGACTGTCTACGTCGAGGTG 90 |||||||||||||| || || || || ||| Sbjct 176 AACAAGCTGGCGACGGTGTATGTGGAAGTG 205 >seq785530 Length=109 Score = 87.8 bits (96), Expect = 1e-15 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 1 CTGGCGACCCTGCAGGGCTTCAGCATCGGTATCGCCCGCTAGTCGCCCAACTGGATGGTC 60 ||||||||||||| ||||||| |||||| | || || | |||||||||||||||| || Sbjct 84 CTGGCGACCCTGCTCGGCTTCATCATCGGCGTGGCGCGTTTGTCGCCCAACTGGATGATC 25 Query 61 AACAAGCTGGCGACTGTCTACGT 83 ||||| |||||||| || || || Sbjct 24 AACAAACTGGCGACGGTGTATGT 2 >seq2645311 Length=187 Score = 82.4 bits (90), Expect = 5e-14 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 1 CTGGCGACCCTGCAGGGCTTCAGCATCGGTATCGCCCGCTAGTCGCCCAACTGGATGGTC 60 ||||||||||||| ||||| | |||||| | || || | |||||||||||||||| || Sbjct 84 CTGGCGACCCTGCTCGGCTTTATCATCGGCGTGGCGCGTTTGTCGCCCAACTGGATGATC 25 Query 61 AACAAGCTGGCGACTGTCTACGT 83 ||||| |||||||| || || || Sbjct 24 AACAAACTGGCGACGGTGTATGT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313841811670