Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq2052818 91.5 1e-16 seq2081632 87.8 2e-15 seq2081631 87.8 2e-15 seq1970050 87.8 2e-15 seq1970049 87.8 2e-15 seq1814696 87.8 2e-15 seq2144768 80.6 2e-13 seq210950 77.0 3e-12 seq2144767 75.2 1e-11 >seq2052818 Length=127 Score = 91.5 bits (100), Expect = 1e-16 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTAC- 64 ||||||||||||| ||| || ||||||| ||| |||||| || |||||||||||| | Sbjct 1 ACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGCTTCG 60 Query 65 GGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||| | |||| | | |||||||| |||| || |||||||| ||||| Sbjct 61 GGGGGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCC 110 >seq2081632 Length=127 Score = 87.8 bits (96), Expect = 2e-15 Identities = 85/108 (79%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||||||| ||| |||||| || |||||||||||| |||| Sbjct 1 GGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGCTTCGGG 60 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || |||| | | |||||||| |||| || |||||||| ||||| Sbjct 61 GAGACGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCC 108 >seq2081631 Length=127 Score = 87.8 bits (96), Expect = 2e-15 Identities = 85/108 (79%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||||||| ||| |||||| || |||||||||||| |||| Sbjct 1 GGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGCTTCGGG 60 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || |||| | | |||||||| |||| || |||||||| ||||| Sbjct 61 GAGGCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCC 108 >seq1970050 Length=127 Score = 87.8 bits (96), Expect = 2e-15 Identities = 85/108 (79%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||| |||||| | ||||||||||| Sbjct 19 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGGAGCCTGCGAAAAGC 78 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGG 108 | |||||| | |||| | | |||||||| |||| || |||||||| Sbjct 79 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGG 126 >seq1970049 Length=127 Score = 87.8 bits (96), Expect = 2e-15 Identities = 85/108 (79%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||| |||||| | ||||||||||| Sbjct 19 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGAAGCCTGCGAAAAGC 78 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGG 108 | |||||| | |||| | | |||||||| |||| || |||||||| Sbjct 79 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGG 126 >seq1814696 Length=127 Score = 87.8 bits (96), Expect = 2e-15 Identities = 85/108 (79%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||||||| ||| |||||| || |||||||||||| |||| Sbjct 127 GGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGCTTCGGG 68 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || |||| | | |||||||| |||| || |||||||| ||||| Sbjct 67 GAGCCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCC 20 >seq2144768 Length=127 Score = 80.6 bits (88), Expect = 2e-13 Identities = 73/91 (80%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 25 TCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGA-TTGGCACATACGAA 83 || ||||||| ||| |||||| || |||||||||||| |||||| | |||| | | | Sbjct 121 TCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGCTTCGGGGAGTCGGCAAACAGGCT 62 Query 84 TTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||||||| |||| || |||||||| ||||| Sbjct 61 TTGATCCGGAGATGTCTGAATGGGGGAACCC 31 >seq210950 Length=3273 Score = 77.0 bits (84), Expect = 3e-12 Identities = 86/115 (75%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 ||||||||||||| | | || |||| ||| |||||||| || | | ||| | ||| || Sbjct 2054 ACGGTGGATGCCTTGACACTAGGAGTCGATGAAGGACGGGACTAACGCCGATATGCTTCG 2113 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 |||| | | || | |||||||| |||| ||||||||||| ||||| |||| Sbjct 2114 GGGAGCTGTAAGTAAGCTTTGATCCGAAGATTTCCGAATGGGGAAACCCACTATA 2168 >seq2144767 Length=127 Score = 75.2 bits (82), Expect = 1e-11 Identities = 72/91 (79%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 25 TCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGA-TTGGCACATACGAA 83 || ||||||| ||| |||||| || |||||||||||| |||||| | |||| | | Sbjct 121 TCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGCTTCGGGGAGTCGGCAAACAGTCT 62 Query 84 TTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||||||| |||| || |||||||| ||||| Sbjct 61 TTGATCCGGAGATGTCTGAATGGGGGAACCC 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462534167691