Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq222150 120 3e-25 seq2156729 82.4 8e-14 seq2156728 82.4 8e-14 seq1994215 82.4 8e-14 seq1964928 82.4 8e-14 seq1919682 82.4 8e-14 seq1695923 82.4 8e-14 seq10722 82.4 8e-14 seq2170463 80.6 3e-13 seq2089151 75.2 1e-11 >seq222150 Length=2306 Score = 120 bits (132), Expect = 3e-25 Identities = 132/175 (75%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| |||| || | || || |||||| | ||| ||| ||||| Sbjct 661 CGCAAACCGACACAGGTAGGCGAGGAGAGAATCCTAAGGTGTGCGAGAGAACTCTGGTTA 602 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| |||||| |||||||||||| || |||| | | | || || | Sbjct 601 AGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTTTC---TTAACGGAA 545 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||||| ||||||| ||| || |||||||| |||||||||||| || ||| || Sbjct 544 AGCCGCAGTGAATAGGCCCAAGCGACTGTTTAGCAAAAACACAGGTCTCTGCGAA 490 >seq2156729 Length=127 Score = 82.4 bits (90), Expect = 8e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || || |||| || |||| |||||||||||| || ||| ||| Sbjct 16 CAAACCGACACAGGTGGTTGGGTAGAGAATACCAAGGCGCTTGAGAGAGCTCGGGTGAAG 75 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||||||| || | | |||||||||||| || Sbjct 76 GAACTAGGCAAAATGGCACCGTAACTTCGGGAGAA 110 >seq2156728 Length=127 Score = 82.4 bits (90), Expect = 8e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || || |||| || |||| |||||||||||| || ||| ||| Sbjct 16 CAAACCGACACAGGTGGTTGGGTAGAGAATACCAAGGCGCTTGAGAGACCTCGGGTGAAG 75 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||||||| || | | |||||||||||| || Sbjct 76 GAACTAGGCAAAATGGCACCGTAACTTCGGGAGAA 110 >seq1994215 Length=127 Score = 82.4 bits (90), Expect = 8e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || || |||| || |||| |||||||||||| ||| || ||| Sbjct 119 CAAACCGACACAGGTGGTTGGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGCGAAG 60 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||||||| || | | |||||||||||| || Sbjct 59 GAACTAGGCAAAATGGCACCGTAACTTCGGGAGAA 25 >seq1964928 Length=127 Score = 82.4 bits (90), Expect = 8e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || || |||| || |||| |||||||||||| ||| ||| ||| Sbjct 126 CAAACCGACACAGGTGGTTGGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGTGAAG 67 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 || ||||||||| || | | |||||||||||| || Sbjct 66 GAGCTAGGCAAAATGGCACCGTAACTTCGGGAGAA 32 >seq1919682 Length=127 Score = 82.4 bits (90), Expect = 8e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || || |||| || |||| |||||||||||| ||| || ||| Sbjct 9 CAAACCGACACAGGTGGTTGGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGAGAAG 68 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||||||| || | | |||||||||||| || Sbjct 69 GAACTAGGCAAAATGGCACCGTAACTTCGGGAGAA 103 >seq1695923 Length=127 Score = 82.4 bits (90), Expect = 8e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || || |||| || |||| |||||||||||| ||| || ||| Sbjct 9 CAAACCGACACAGGTGGTTGGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGGGAAG 68 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||||||| || | | |||||||||||| || Sbjct 69 GAACTAGGCAAAATGGCACCGTAACTTCGGGAGAA 103 >seq10722 Length=3686 Score = 82.4 bits (90), Expect = 8e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || ||| ||| || |||| |||||||||||| ||| ||| ||| Sbjct 1513 CAAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGTGAAG 1454 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||||||| || | |||||||||||| || Sbjct 1453 GAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAA 1419 >seq2170463 Length=127 Score = 80.6 bits (88), Expect = 3e-13 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || || |||| || || | |||||||||||| ||| ||| ||| Sbjct 34 CAAACCGACACAGGTGGTTGGGTAGAGAATGCCAAGGCGCTTGAGAGAACTCGGGTGAAG 93 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGA 115 |||||||||||| || | | |||||||||||| Sbjct 94 GAACTAGGCAAAATGGCACCGTAACTTCGGGA 125 >seq2089151 Length=127 Score = 75.2 bits (82), Expect = 1e-11 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 40 GTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGGAACTAGGCAAACTGA 99 || |||| || |||| |||||||||||| ||| ||| ||||||||||||||| || Sbjct 125 GTTGGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGTGAAGGAACTAGGCAAAATGG 66 Query 100 CCCTGTAACTTCGGGATAA 118 ||| |||||||||||| || Sbjct 65 CCCCGTAACTTCGGGAGAA 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515306522394