Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq2002996 224 9e-57 seq2002995 224 9e-57 seq2002994 224 9e-57 seq1681723 224 9e-57 seq1801674 197 1e-48 seq1801673 197 1e-48 seq2148173 187 2e-45 seq10722 176 4e-42 seq2151977 174 1e-41 seq2117772 174 1e-41 seq2079760 174 1e-41 seq1663058 159 3e-37 seq1902593 154 1e-35 seq2100144 145 7e-33 seq238657 136 4e-30 seq2172502 127 2e-27 seq1774809 113 4e-23 seq1950053 109 5e-22 seq2076833 100 3e-19 seq1640438 98.7 9e-19 seq222150 87.8 2e-15 seq2140075 84.2 2e-14 >seq2002996 Length=127 Score = 224 bits (248), Expect = 9e-57 Identities = 126/127 (99%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 29 GCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACAC 88 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACAC 68 Query 89 AGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGG 148 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 AGCCCTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGG 8 Query 149 TTAATTG 155 ||||||| Sbjct 7 TTAATTG 1 >seq2002995 Length=127 Score = 224 bits (248), Expect = 9e-57 Identities = 126/127 (99%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 29 GCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACAC 88 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACAC 68 Query 89 AGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGG 148 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 AGCGCTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGG 8 Query 149 TTAATTG 155 ||||||| Sbjct 7 TTAATTG 1 >seq2002994 Length=127 Score = 224 bits (248), Expect = 9e-57 Identities = 126/127 (99%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 29 GCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACAC 88 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACAC 68 Query 89 AGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGG 148 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 AGCTCTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGG 8 Query 149 TTAATTG 155 ||||||| Sbjct 7 TTAATTG 1 >seq1681723 Length=127 Score = 224 bits (248), Expect = 9e-57 Identities = 126/127 (99%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 24 GACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAA 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAA 68 Query 84 AACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCG 143 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 AACCCAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCG 8 Query 144 GAAGGTT 150 ||||||| Sbjct 7 GAAGGTT 1 >seq1801674 Length=127 Score = 197 bits (218), Expect = 1e-48 Identities = 111/112 (99%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 68 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 AAGCGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 16 >seq1801673 Length=127 Score = 197 bits (218), Expect = 1e-48 Identities = 111/112 (99%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 68 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 AAGGGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 16 >seq2148173 Length=127 Score = 187 bits (206), Expect = 2e-45 Identities = 105/106 (99%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 53 AGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGG 112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 AGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGG 68 Query 113 ACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 67 ACGGATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 22 >seq10722 Length=3686 Score = 176 bits (194), Expect = 4e-42 Identities = 112/122 (92%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 37 AGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCT 96 |||| | | | |||||||||||||| ||||| |||||||||||||||||||||||| | Sbjct 1382 AGCTGAAGGCAGTCGAAGATACCAGCTGGCTGCAACTGTTTATTAAAAACACAGCACTGT 1323 Query 97 GCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGA 156 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1322 GCAAACACGAAAGTGGACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGA 1263 Query 157 TG 158 || Sbjct 1262 TG 1261 >seq2151977 Length=127 Score = 174 bits (192), Expect = 1e-41 Identities = 98/99 (99%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 68 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||| ||||||||||||||||||||||||||||||||||| Sbjct 67 GGGCGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 29 >seq2117772 Length=127 Score = 174 bits (192), Expect = 1e-41 Identities = 99/101 (98%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 20 GAGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 79 || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 101 GAAGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATCCCAGGCCGCTGCGACTGTTTAT 42 Query 80 TAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAG 120 ||||||||||||||||||||||||||||||||||||||||| Sbjct 41 TAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAG 1 >seq2079760 Length=127 Score = 174 bits (192), Expect = 1e-41 Identities = 98/99 (99%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 68 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||| ||||||||||||||||||||||||||||||||||| Sbjct 67 GGGGGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 29 >seq1663058 Length=127 Score = 159 bits (176), Expect = 3e-37 Identities = 91/93 (98%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 20 GAGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 79 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 35 GAAGGACTTGCTCCGTAAGCTCATGCCGGCCGAAGATACCAGGCCGCTGCGACTGTTTAT 94 Query 80 TAAAAACACAGCACTCTGCAAACACGAAAGTGG 112 ||||||||||||||||||||||||||||||||| Sbjct 95 TAAAAACACAGCACTCTGCAAACACGAAAGTGG 127 >seq1902593 Length=127 Score = 154 bits (170), Expect = 1e-35 Identities = 88/90 (98%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 20 GAGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 79 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 90 GAAGGACTTGCTCCGTAAGCTCATGCTGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 31 Query 80 TAAAAACACAGCACTCTGCAAACACGAAAG 109 |||||||||||||||||||||||||||||| Sbjct 30 TAAAAACACAGCACTCTGCAAACACGAAAG 1 >seq2100144 Length=127 Score = 145 bits (160), Expect = 7e-33 Identities = 82/83 (99%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 76 TTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCC 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 TTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCC 68 Query 136 CGGTGCCGGAAGGTTAATTGATG 158 ||| ||||||||||||||||||| Sbjct 67 CGGCGCCGGAAGGTTAATTGATG 45 >seq238657 Length=586 Score = 136 bits (150), Expect = 4e-30 Identities = 77/78 (99%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 81 AAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTG 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 170 AAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTG 111 Query 141 CCGGAAGGTTAATTGATG 158 | |||||||||||||||| Sbjct 110 CTGGAAGGTTAATTGATG 93 >seq2172502 Length=127 Score = 127 bits (140), Expect = 2e-27 Identities = 72/73 (99%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 86 CACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGA 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 CACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGA 68 Query 146 AGGTTAATTGATG 158 ||| ||||||||| Sbjct 67 AGGGTAATTGATG 55 >seq1774809 Length=127 Score = 113 bits (124), Expect = 4e-23 Identities = 64/65 (98%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 18 GGGAGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTT 77 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 GGGAAGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTT 122 Query 78 ATTAA 82 ||||| Sbjct 123 ATTAA 127 >seq1950053 Length=127 Score = 109 bits (120), Expect = 5e-22 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 20 GAGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 79 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 65 GAAGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 124 Query 80 TAA 82 ||| Sbjct 125 TAA 127 >seq2076833 Length=127 Score = 100 bits (110), Expect = 3e-19 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 104 CGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 55 >seq1640438 Length=127 Score = 98.7 bits (108), Expect = 9e-19 Identities = 56/57 (98%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 20 GAGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTT 76 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71 GAAGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTT 127 >seq222150 Length=2306 Score = 87.8 bits (96), Expect = 2e-15 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| ||||||||||| |||||||||| |||||| || || ||| || ||||| Sbjct 531 AGGCCCAAGCGACTGTTTAGCAAAAACACAGGTCTCTGCGAAGCCGTAAGGCGAAGTATA 472 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| |||| |||||||||||| |||||||||| Sbjct 471 GGGGCTGACACCTGCCCGGTGCTGGAAGGTTAA 439 >seq2140075 Length=127 Score = 84.2 bits (92), Expect = 2e-14 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 20 GAGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTG 68 || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49 GAAGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462534167691