Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01000612.1
Length=395
Score E
Sequences producing significant alignments: (Bits) Value
seq3037433 212 1e-52
seq339202 212 1e-52
seq2753395 109 1e-21
seq2753396 100 6e-19
seq2288132 98.7 2e-18
seq2288133 93.3 1e-16
>seq3037433
Length=977
Score = 212 bits (234), Expect = 1e-52
Identities = 210/270 (78%), Gaps = 4/270 (1%)
Strand=Plus/Plus
Query 119 ATTCAAGGCATCTTCAAGCTGGAAAGTGCGGCTTTACCCT--TGGGCGACAAAACAGGTT 176
||||| |||| |||||||||| | || ||||| || | || || | | || |
Sbjct 255 ATTCAGGGCAGTTTCAAGCTGGGCAAAGCCGCTTTGCCTGACTCGGTGAGTA--CCGGCT 312
Query 177 CCAACTGCTCCCAGGTGAAACTCAGGTCATTGTCGCAACCGTCGCCATTGGCGGGCGTGG 236
|||| ||| |||||||||| |||| ||||||||||||||||||||| |||| | ||||
Sbjct 313 CCAATTGCGCCCAGGTGAAGCTCAAGTCATTGTCGCAACCGTCGCCCGTGGCACGTGTGG 372
Query 237 ATAGCTTCATGCCTTGAGTGTCGAAGCTCAGGTCGAAGCTCGAGTAACTGGTGATCGCCG 296
|| | || |||||| |||| |||||||||||||||||| ||| |||||||| ||||
Sbjct 373 CAAGTTGCAAGCCTTGGGTGTTGAAGCTCAGGTCGAAGCTGTCGTAGCTGGTGATGGCCG 432
Query 297 GGCAACCTTCATCGGTGGTGGTTTGCTTCTCCAGCCATGCGCTGAAGTTGGCGGGCAGTT 356
|||| || || |||||||||||||| || ||||||| |||||||| ||||||||| |
Sbjct 433 GGCAGCCCTCGTCGGTGGTGGTTTGTTTGGCCAGCCAGGCGCTGAACCTGGCGGGCAACT 492
Query 357 TCAGATGGCCGGAGTAAGCGTCCTACCATT 386
||| || |||||||| |||| |||| ||
Sbjct 493 TCACGTGCCCGGAGTAGACGTCATACCCTT 522
>seq339202
Length=21042
Score = 212 bits (234), Expect = 1e-52
Identities = 210/269 (78%), Gaps = 2/269 (1%)
Strand=Plus/Minus
Query 119 ATTCAAGGCATCTTCAAGCTGGAAAGTGCGGCTTTACCCTTGGGCGACAAA-ACAGGTTC 177
||||| |||| ||||||| | | ||| ||||| || | | || | || || ||
Sbjct 19921 ATTCAGGGCAGTTTCAAGCGCGGCAATGCCGCTTTGCC-TGGCTCGGTGAGTACCGGCTC 19863
Query 178 CAACTGCTCCCAGGTGAAACTCAGGTCATTGTCGCAACCGTCGCCATTGGCGGGCGTGGA 237
||| ||| ||||||| || |||| |||||||||||||||||||| ||||| | |||||
Sbjct 19862 CAATTGCGCCCAGGTCAAGCTCAACTCATTGTCGCAACCGTCGCCGGTGGCGCGTGTGGA 19803
Query 238 TAGCTTCATGCCTTGAGTGTCGAAGCTCAGGTCGAAGCTCGAGTAACTGGTGATCGCCGG 297
|| | || |||||| |||| |||||||||||||||||| |||||||||||| |||||
Sbjct 19802 CAGTTGCAGGCCTTGGGTGTTGAAGCTCAGGTCGAAGCTGTCGTAACTGGTGATTGCCGG 19743
Query 298 GCAACCTTCATCGGTGGTGGTTTGCTTCTCCAGCCATGCGCTGAAGTTGGCGGGCAGTTT 357
||| || || || ||||||||||| || ||||||| |||||||| ||||| |||| ||
Sbjct 19742 GCAGCCCTCGTCAGTGGTGGTTTGTTTGGCCAGCCAGGCGCTGAACTTGGCAGGCAACTT 19683
Query 358 CAGATGGCCGGAGTAAGCGTCCTACCATT 386
|| || |||||||| |||| |||||||
Sbjct 19682 CACGTGCCCGGAGTAGACGTCATACCATT 19654
>seq2753395
Length=214
Score = 109 bits (120), Expect = 1e-21
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 225 TGGCGGGCGTGGATAGCTTCATGCCTTGAGTGTCGAAGCTCAGGTCGAAGCTCGAGTAAC 284
|||| || || || || | || |||||| |||| |||||||||||| ||| || || |
Sbjct 6 TGGCCGGTGTCGAGAGTTGCAGGCCTTGGGTGTTGAAGCTCAGGTCAAAGGAGGAATAGC 65
Query 285 TGGTGATCGCCGGGCAACCTTCATCGGTGGTGGTTTGCTTCTCCAGCCATGCGCTGAAGT 344
| |||| |||||||| ||||| || |||||||||||||| ||||||| ||||||
Sbjct 66 GGTTGATGGCCGGGCAGCCTTCGTCAGTGGTGGTTTGCTTGGCCAGCCAGCGGCTGAATG 125
Query 345 TGGCGGGCAGTTTCAGATGGCCGGAGTA 372
| |||||| || | |||||||||||
Sbjct 126 CGCTGGGCAGCTTGATTTGGCCGGAGTA 153
>seq2753396
Length=214
Score = 100 bits (110), Expect = 6e-19
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 225 TGGCGGGCGTGGATAGCTTCATGCCTTGAGTGTCGAAGCTCAGGTCGAAGCTCGAGTAAC 284
|||| || || || || | || |||||| |||| |||||||||||| ||| || ||||
Sbjct 6 TGGCCGGTGTCGAGAGTTGCAGGCCTTGGGTGTTGAAGCTCAGGTCAAAGGAGGAATAAC 65
Query 285 TGGTGATCGCCGGGCAACCTTCATCGGTGGTGGTTTGCTTCTCCAGCCATGCGCTGAAGT 344
| |||| |||||||| || ||||| |||||||||||| | |||||| ||||||
Sbjct 66 GGTTGATGGCCGGGCAGCCCTCATCAGTGGTGGTTTGCGTGGTCAGCCAGCGGCTGAATG 125
Query 345 TGGCGGGCAGTTTCAGATGGCCGGAGTA 372
| |||||| || | |||||||| ||
Sbjct 126 CGCTGGGCAGCTTGATTTGGCCGGAATA 153
>seq2288132
Length=136
Score = 98.7 bits (108), Expect = 2e-18
Identities = 81/99 (82%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 170 ACAGGTTCCAACTGCTCCCAGGTGAAACTCAGGTCATTGTCGCAACCGTCGCCATTGGCG 229
|| || ||||||||||||||||||||| || |||||||||||| ||||| || ||||
Sbjct 38 ACCGGCTCCAACTGCTCCCAGGTGAAAGACAAGTCATTGTCGCAGCCGTCTCCCGTGGCC 97
Query 230 GGCGTGGATAGCTTCATGCCTTGAGTGTCGAAGCTCAGG 268
|| || || || | || |||||| |||| ||||||||||
Sbjct 98 GGTGTCGAGAGTTGCAGGCCTTGGGTGTTGAAGCTCAGG 136
>seq2288133
Length=136
Score = 93.3 bits (102), Expect = 1e-16
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 170 ACAGGTTCCAACTGCTCCCAGGTGAAACTCAGGTCATTGTCGCAACCGTCGCCATTGGCG 229
|| || |||||||||||||||||||| |||||| |||||||| ||||| || ||||
Sbjct 38 ACCGGCTCCAACTGCTCCCAGGTGAAGGACAGGTCGTTGTCGCAGCCGTCTCCCGTGGCC 97
Query 230 GGCGTGGATAGCTTCATGCCTTGAGTGTCGAAGCTCAGG 268
|| || || || | || |||||| |||| ||||||||||
Sbjct 98 GGTGTCGAGAGTTGCAGGCCTTGGGTGTTGAAGCTCAGG 136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1125723856224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |