Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01000612.1 Length=395 Score E Sequences producing significant alignments: (Bits) Value seq3037433 212 1e-52 seq339202 212 1e-52 seq2753395 109 1e-21 seq2753396 100 6e-19 seq2288132 98.7 2e-18 seq2288133 93.3 1e-16 >seq3037433 Length=977 Score = 212 bits (234), Expect = 1e-52 Identities = 210/270 (78%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 119 ATTCAAGGCATCTTCAAGCTGGAAAGTGCGGCTTTACCCT--TGGGCGACAAAACAGGTT 176 ||||| |||| |||||||||| | || ||||| || | || || | | || | Sbjct 255 ATTCAGGGCAGTTTCAAGCTGGGCAAAGCCGCTTTGCCTGACTCGGTGAGTA--CCGGCT 312 Query 177 CCAACTGCTCCCAGGTGAAACTCAGGTCATTGTCGCAACCGTCGCCATTGGCGGGCGTGG 236 |||| ||| |||||||||| |||| ||||||||||||||||||||| |||| | |||| Sbjct 313 CCAATTGCGCCCAGGTGAAGCTCAAGTCATTGTCGCAACCGTCGCCCGTGGCACGTGTGG 372 Query 237 ATAGCTTCATGCCTTGAGTGTCGAAGCTCAGGTCGAAGCTCGAGTAACTGGTGATCGCCG 296 || | || |||||| |||| |||||||||||||||||| ||| |||||||| |||| Sbjct 373 CAAGTTGCAAGCCTTGGGTGTTGAAGCTCAGGTCGAAGCTGTCGTAGCTGGTGATGGCCG 432 Query 297 GGCAACCTTCATCGGTGGTGGTTTGCTTCTCCAGCCATGCGCTGAAGTTGGCGGGCAGTT 356 |||| || || |||||||||||||| || ||||||| |||||||| ||||||||| | Sbjct 433 GGCAGCCCTCGTCGGTGGTGGTTTGTTTGGCCAGCCAGGCGCTGAACCTGGCGGGCAACT 492 Query 357 TCAGATGGCCGGAGTAAGCGTCCTACCATT 386 ||| || |||||||| |||| |||| || Sbjct 493 TCACGTGCCCGGAGTAGACGTCATACCCTT 522 >seq339202 Length=21042 Score = 212 bits (234), Expect = 1e-52 Identities = 210/269 (78%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 119 ATTCAAGGCATCTTCAAGCTGGAAAGTGCGGCTTTACCCTTGGGCGACAAA-ACAGGTTC 177 ||||| |||| ||||||| | | ||| ||||| || | | || | || || || Sbjct 19921 ATTCAGGGCAGTTTCAAGCGCGGCAATGCCGCTTTGCC-TGGCTCGGTGAGTACCGGCTC 19863 Query 178 CAACTGCTCCCAGGTGAAACTCAGGTCATTGTCGCAACCGTCGCCATTGGCGGGCGTGGA 237 ||| ||| ||||||| || |||| |||||||||||||||||||| ||||| | ||||| Sbjct 19862 CAATTGCGCCCAGGTCAAGCTCAACTCATTGTCGCAACCGTCGCCGGTGGCGCGTGTGGA 19803 Query 238 TAGCTTCATGCCTTGAGTGTCGAAGCTCAGGTCGAAGCTCGAGTAACTGGTGATCGCCGG 297 || | || |||||| |||| |||||||||||||||||| |||||||||||| ||||| Sbjct 19802 CAGTTGCAGGCCTTGGGTGTTGAAGCTCAGGTCGAAGCTGTCGTAACTGGTGATTGCCGG 19743 Query 298 GCAACCTTCATCGGTGGTGGTTTGCTTCTCCAGCCATGCGCTGAAGTTGGCGGGCAGTTT 357 ||| || || || ||||||||||| || ||||||| |||||||| ||||| |||| || Sbjct 19742 GCAGCCCTCGTCAGTGGTGGTTTGTTTGGCCAGCCAGGCGCTGAACTTGGCAGGCAACTT 19683 Query 358 CAGATGGCCGGAGTAAGCGTCCTACCATT 386 || || |||||||| |||| ||||||| Sbjct 19682 CACGTGCCCGGAGTAGACGTCATACCATT 19654 >seq2753395 Length=214 Score = 109 bits (120), Expect = 1e-21 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 225 TGGCGGGCGTGGATAGCTTCATGCCTTGAGTGTCGAAGCTCAGGTCGAAGCTCGAGTAAC 284 |||| || || || || | || |||||| |||| |||||||||||| ||| || || | Sbjct 6 TGGCCGGTGTCGAGAGTTGCAGGCCTTGGGTGTTGAAGCTCAGGTCAAAGGAGGAATAGC 65 Query 285 TGGTGATCGCCGGGCAACCTTCATCGGTGGTGGTTTGCTTCTCCAGCCATGCGCTGAAGT 344 | |||| |||||||| ||||| || |||||||||||||| ||||||| |||||| Sbjct 66 GGTTGATGGCCGGGCAGCCTTCGTCAGTGGTGGTTTGCTTGGCCAGCCAGCGGCTGAATG 125 Query 345 TGGCGGGCAGTTTCAGATGGCCGGAGTA 372 | |||||| || | ||||||||||| Sbjct 126 CGCTGGGCAGCTTGATTTGGCCGGAGTA 153 >seq2753396 Length=214 Score = 100 bits (110), Expect = 6e-19 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 225 TGGCGGGCGTGGATAGCTTCATGCCTTGAGTGTCGAAGCTCAGGTCGAAGCTCGAGTAAC 284 |||| || || || || | || |||||| |||| |||||||||||| ||| || |||| Sbjct 6 TGGCCGGTGTCGAGAGTTGCAGGCCTTGGGTGTTGAAGCTCAGGTCAAAGGAGGAATAAC 65 Query 285 TGGTGATCGCCGGGCAACCTTCATCGGTGGTGGTTTGCTTCTCCAGCCATGCGCTGAAGT 344 | |||| |||||||| || ||||| |||||||||||| | |||||| |||||| Sbjct 66 GGTTGATGGCCGGGCAGCCCTCATCAGTGGTGGTTTGCGTGGTCAGCCAGCGGCTGAATG 125 Query 345 TGGCGGGCAGTTTCAGATGGCCGGAGTA 372 | |||||| || | |||||||| || Sbjct 126 CGCTGGGCAGCTTGATTTGGCCGGAATA 153 >seq2288132 Length=136 Score = 98.7 bits (108), Expect = 2e-18 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 170 ACAGGTTCCAACTGCTCCCAGGTGAAACTCAGGTCATTGTCGCAACCGTCGCCATTGGCG 229 || || ||||||||||||||||||||| || |||||||||||| ||||| || |||| Sbjct 38 ACCGGCTCCAACTGCTCCCAGGTGAAAGACAAGTCATTGTCGCAGCCGTCTCCCGTGGCC 97 Query 230 GGCGTGGATAGCTTCATGCCTTGAGTGTCGAAGCTCAGG 268 || || || || | || |||||| |||| |||||||||| Sbjct 98 GGTGTCGAGAGTTGCAGGCCTTGGGTGTTGAAGCTCAGG 136 >seq2288133 Length=136 Score = 93.3 bits (102), Expect = 1e-16 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 170 ACAGGTTCCAACTGCTCCCAGGTGAAACTCAGGTCATTGTCGCAACCGTCGCCATTGGCG 229 || || |||||||||||||||||||| |||||| |||||||| ||||| || |||| Sbjct 38 ACCGGCTCCAACTGCTCCCAGGTGAAGGACAGGTCGTTGTCGCAGCCGTCTCCCGTGGCC 97 Query 230 GGCGTGGATAGCTTCATGCCTTGAGTGTCGAAGCTCAGG 268 || || || || | || |||||| |||| |||||||||| Sbjct 98 GGTGTCGAGAGTTGCAGGCCTTGGGTGTTGAAGCTCAGG 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1125723856224