Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01000813.1 Length=105 Score E Sequences producing significant alignments: (Bits) Value seq201811 98.7 5e-19 seq3055454 86.0 3e-15 seq141712 86.0 3e-15 seq2829372 82.4 4e-14 seq3065507 77.0 2e-12 >seq201811 Length=1378 Score = 98.7 bits (108), Expect = 5e-19 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 14 CTGGTTCTGCCCGAACGGGCGTGCCTTGCCCAGCTCCAGGGTGAAAGCTTCAGCGTCTAG 73 |||||||||||||||||| || |||||||||| ||||||||||| ||||| ||||| || Sbjct 628 CTGGTTCTGCCCGAACGGCCGGGCCTTGCCCAATTCCAGGGTGAAGGCTTCGGCGTCCAG 569 Query 74 CTTGTCATAGGTGTAAGCGCTGAAGACGATCG 105 | ||||||||| | ||| ||||| ||||| Sbjct 568 TTGCTCATAGGTGAACGCGGTGAAGGTGATCG 537 >seq3055454 Length=1240 Score = 86.0 bits (94), Expect = 3e-15 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 14 CTGGTTCTGCCCGAACGGGCGTGCCTTGCCCAGCTCCAGGGTGAAAGCTTCAGCGTCTAG 73 ||||||||| |||||||| || ||||||||||||||||| || || || || |||| || Sbjct 171 CTGGTTCTGGCCGAACGGCCGCGCCTTGCCCAGCTCCAGAGTAAACGCCTCGGCGTTCAG 112 Query 74 CTTGTCATAGGTGTAAGCGCTGAAGACGATCG 105 | ||||||||| | ||| ||||| ||||| Sbjct 111 TTGCTCATAGGTGAACGCGGTGAAGGTGATCG 80 >seq141712 Length=747 Score = 86.0 bits (94), Expect = 3e-15 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 14 CTGGTTCTGCCCGAACGGGCGTGCCTTGCCCAGCTCCAGGGTGAAAGCTTCAGCGTCTAG 73 ||||||||| |||||||| || ||||||||||| |||| |||||||| || |||| || Sbjct 502 CTGGTTCTGGCCGAACGGCCGCGCCTTGCCCAGTTCCAAAGTGAAAGCCTCGGCGTTCAG 443 Query 74 CTTGTCATAGGTGTAAGCGCTGAAGACGATCG 105 | ||||||||| | ||| ||||| ||||| Sbjct 442 TTGCTCATAGGTGAACGCGGTGAAGGTGATCG 411 >seq2829372 Length=253 Score = 82.4 bits (90), Expect = 4e-14 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 14 CTGGTTCTGCCCGAACGGGCGTGCCTTGCCCAGCTCCAGGGTGAAAGCTTCAGCGTCTAG 73 |||||||||||||||||| || |||||||||| ||||||||||| || || ||||| || Sbjct 16 CTGGTTCTGCCCGAACGGCCGGGCCTTGCCCAATTCCAGGGTGAAGGCCTCCGCGTCCAG 75 Query 74 CTTGTCATAGGTGTAAGCGCTGAAG 98 | || ||||| | ||| ||||| Sbjct 76 TTGCTCGTAGGTAAACGCGGTGAAG 100 >seq3065507 Length=1467 Score = 77.0 bits (84), Expect = 2e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 14 CTGGTTCTGCCCGAACGGGCGTGCCTTGCCCAGCTCCAGGGTGAAAGCTTCAGCGTCTAG 73 |||||||||||| ||||| || |||||||||| |||||||||||||| || ||||| | Sbjct 570 CTGGTTCTGCCCAAACGGCCGCGCCTTGCCCAATTCCAGGGTGAAAGCCTCGGCGTCCAA 511 Query 74 CTTGTCATAGGT 85 || ||||| || Sbjct 510 CTGTTCATACGT 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 233050850250