Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq203692 131 3e-28 seq28914 131 3e-28 seq13237 123 4e-26 seq320708 120 5e-25 seq74132 96.9 5e-18 seq32029 93.3 7e-17 seq326677 82.4 1e-13 seq361122 78.8 1e-12 seq74865 78.8 1e-12 seq35691 77.0 5e-12 seq340658 75.2 2e-11 >seq203692 Length=21659 Score = 131 bits (144), Expect = 3e-28 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | || || ||| ||||| ||||||||||||||||||||| | || Sbjct 17869 CTAGTTAGCATGCCAGAGTGTCCTTCATTATCAGAATTAACCAGACAAATCACTTTATCA 17928 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||| ||||||||||| |||||| |||||||||||||| || ||| Sbjct 17929 ACTAAGAACGGCCATGTACCACCACCCACAGAATCGAGAAAGAGCTATCAGTCAGTC 17985 >seq28914 Length=37945 Score = 131 bits (144), Expect = 3e-28 Identities = 181/249 (73%), Gaps = 22/249 (9%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | |||| |||| | |||||||||||||||||||||||||||||| || Sbjct 2900 GTCAGTGTAGCACATGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 2958 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAAC--CA 129 || ||| |||||| | |||| | ||||||||||||| | | || || | Sbjct 2959 CAGTCTT-GGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGAGGATGCCGACAGCT 3017 Query 130 TAGTCGATG--GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | || ||| |||||| | | ||||| || |||||| ||||||||| ||| Sbjct 3018 CAGGGGTTGCATAACTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCTGAC 3077 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||||||||| | ||||||||||||||||||| ||||| || | ||| Sbjct 3078 AAATCACTCC-----------ATGGCCATGCACCACCACCCACGGAATCGAGGA--GGCT 3124 Query 248 ATCAATCTG 256 ||||||||| Sbjct 3125 ATCAATCTG 3133 >seq13237 Length=15213 Score = 123 bits (136), Expect = 4e-26 Identities = 182/250 (73%), Gaps = 17/250 (7%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC--CTGTTATTGCCT 74 ||||||||||| ||| |||| |||||||||||||||||||| |||||| ||| | Sbjct 7762 CAGTGTAGCGCTTATGCAGCCCCAGACATCTAAGGGCATCACAGATGTCTGTTAATGC-T 7704 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAAC--CA 129 || || || ||||| | || | | |||| ||||||||| | | ||||| | Sbjct 7703 CAGTCTCAGAT-GGCTGAATGCTACTTGTCCTTCTAAGAAGTTGGGGGACGCCAACTGCT 7645 Query 130 TAGTCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | || ||| |||||| | | |||| ||| ||||| ||||||||||||| Sbjct 7644 CAGGGGTTGCCTAACTAGTTAGCATGCCAGAGTCTTTTTCATTATCAGAATTAACCAGAC 7585 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||| ||| ||||| |||| |||||||||||||| ||| ||||| ||||||||| Sbjct 7584 AAATTTCTCTACCAA----GAACAGCCATGCACCACCATCCACAGAATGGAGAAAGAGC- 7530 Query 248 ATCAATCTGT 257 ||||||||| Sbjct 7529 -TCAATCTGT 7521 >seq320708 Length=11822 Score = 120 bits (132), Expect = 5e-25 Identities = 98/118 (83%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||| | | ||||| || |||||||||| |||| |||||| | ||||||| Sbjct 10256 GCTAGTTAGCATGCCAGAGTCTCATTTGTTATCGGAAGTAACAAGACAATTG-CTCCACC 10198 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||||||||||||||| |||| |||||||| |||||||||||| Sbjct 10197 TTCTAAGAACAGCCATGCACCACCACCCATGGAATTGAGAAAGAGTTATCAATCTGTC 10140 >seq74132 Length=39836 Score = 96.9 bits (106), Expect = 5e-18 Identities = 81/97 (84%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||| |||| || | | ||||||||||| |||||||||||||||||| || Sbjct 30680 GTCAGTGTAGCGCGTGTGCAGCTCCGGACATCTAAGGGAATCACAGACCTGTTATTG-CT 30622 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111 ||| | || |||||| | |||| | |||||||||| Sbjct 30621 CAATC-TCGGGTGGCTGAATGCCACTTGTCCCTCTAA 30586 >seq32029 Length=10792 Score = 93.3 bits (102), Expect = 7e-17 Identities = 71/84 (85%), Gaps = 4/84 (5%) Strand=Plus/Minus Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 |||||||||||||||||| ||| | |||||| ||||| | ||||||||||| ||| Sbjct 448 GGAATTAACCAGACAAATTGTTCCGC----TAAGAATGGCCAGGTACCACCACCCACAGA 393 Query 234 ATCAAGAAAGAGCTATCAATCTGT 257 |||||||||||||| ||||||||| Sbjct 392 ATCAAGAAAGAGCTGTCAATCTGT 369 >seq326677 Length=1433 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| || | || |||||||| || ||||| | || ||||| |||||| | ||||| Sbjct 643 GTCTCATTTGACATAGGAATTAAGCAAACAAACCTTTCTACCAATTAAGAATGTCCATGT 702 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||||||||||||||||| || || || ||||| Sbjct 703 ACCATCACCCATAGAATCAAGAACAAGATAGCAGCCTGTC 742 >seq361122 Length=11440 Score = 78.8 bits (86), Expect = 1e-12 Identities = 76/96 (79%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 163 CGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 || || |||||||| |||||| | |||||| ||||||||| |||||||||||||| | Sbjct 458 CGCTCCTTATCGGAGTTAACCTGGCAAATCGCTCCACCAA----GAACGGCCATGCACAA 513 Query 223 CCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||| ||||| ||| ||| || ||| || ||| Sbjct 514 CC-CCCACGGAATCCAGAGAGAACTGTCAGTCAGTC 548 >seq74865 Length=10888 Score = 78.8 bits (86), Expect = 1e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||| ||||| |||||||||||| |||||||||||||||||||| || |||| || | || Sbjct 5928 AAAGCACTCTACCAACTAAGAATGGCCATGCACCACCACCCATGGACTCAAAAATGCACT 5987 Query 248 ATCAATCTGTC 258 ||| |||||| Sbjct 5988 GTCAGTCTGTC 5998 >seq35691 Length=19888 Score = 77.0 bits (84), Expect = 5e-12 Identities = 66/79 (84%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 || ||||||||||| || | | |||| | |||||||||||||||||||||||||||||| Sbjct 5321 TCAGTCAGTGTAGCATGCATACAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG 5262 Query 72 CCTCAAACTTCCATTGGCT 90 ||||| | || | ||||| Sbjct 5261 -CTCAATC-TCGAGTGGCT 5245 >seq340658 Length=4082 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||| || ||||||||||||||| ||||||| |||||||||||| | ||| |||| ||| Sbjct 2775 AAAGCATTCCACCAACTAAGAATGGCCATGTACCACCACCCATGGGCCCAATAAAGTGCT 2716 Query 248 ATCAATCTGTC 258 || ||| |||| Sbjct 2715 ATTAATTTGTC 2705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 772959783591