Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq10722 143 3e-32 seq2772764 134 1e-29 seq2024926 109 6e-22 seq2024925 109 6e-22 seq2024924 109 6e-22 seq222150 104 2e-20 seq2162000 102 9e-20 seq2104548 102 9e-20 seq1927697 102 9e-20 seq1731886 102 9e-20 seq1652035 102 9e-20 seq2033025 91.5 2e-16 seq2033024 91.5 2e-16 seq1856775 91.5 2e-16 seq2127003 87.8 2e-15 seq2096280 82.4 8e-14 >seq10722 Length=3686 Score = 143 bits (158), Expect = 3e-32 Identities = 122/152 (80%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||||| | |||||||||| | | | ||||||||||| Sbjct 1052 CGGGGTCTTTCCGTCTTGCCGCGGGTACACTGCATCTTCACAGCGATTTCAATTTCACTG 1111 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| || |||||| ||| ||||||||||||||||||||||||| Sbjct 1112 AG-TCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACC 1170 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 1171 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 1202 >seq2772764 Length=222 Score = 134 bits (148), Expect = 1e-29 Identities = 120/152 (79%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | |||| | | |||||||||| | | | ||||||||||| Sbjct 71 CGGGGTCTTTCCGTCTTGCCACGGGAACGCTGCATCTTCACAGCGATTTCAATTTCACTG 130 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| || |||||| ||| ||||||||||||||||||||||||| Sbjct 131 AG-TCTCGGGTGGAGACAGCGCCGCTGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 189 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 190 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 221 >seq2024926 Length=127 Score = 109 bits (120), Expect = 6e-22 Identities = 85/103 (83%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 72 CAATTTCACTGAGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGT 130 ||||||||||||| || ||| || |||||| ||| ||||||||||||| Sbjct 6 CAATTTCACTGAG-TCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGC 64 Query 131 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 65 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 107 >seq2024925 Length=127 Score = 109 bits (120), Expect = 6e-22 Identities = 85/103 (83%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 72 CAATTTCACTGAGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGT 130 ||||||||||||| || ||| || |||||| ||| ||||||||||||| Sbjct 6 CAATTTCACTGAG-TCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGA 64 Query 131 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 65 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 107 >seq2024924 Length=127 Score = 109 bits (120), Expect = 6e-22 Identities = 85/103 (83%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 72 CAATTTCACTGAGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGT 130 ||||||||||||| || ||| || |||||| ||| ||||||||||||| Sbjct 6 CAATTTCACTGAG-TCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGG 64 Query 131 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 65 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 107 >seq222150 Length=2306 Score = 104 bits (114), Expect = 2e-20 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 TACACCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 375 Query 173 ANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 | ||||||||||||||| Sbjct 376 ATAGTTACGGCCGCCGTTTACTGGGGCTTC 405 >seq2162000 Length=127 Score = 102 bits (112), Expect = 9e-20 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 38 TACGCCATTCGTGCAGGTCGGAACTTCCCCGACAAGGAATTTCGCTACCTTAGGACCGTT 97 Query 173 A 173 | Sbjct 98 A 98 >seq2104548 Length=127 Score = 102 bits (112), Expect = 9e-20 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 90 TACGCCATTCGTGCAGGTCGGAACTTTCCCGACAAGGAATTTCGCTACCTTAGGACCGTT 31 Query 173 A 173 | Sbjct 30 A 30 >seq1927697 Length=127 Score = 102 bits (112), Expect = 9e-20 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 110 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTGCCTTAGGACCGTT 51 Query 173 A 173 | Sbjct 50 A 50 >seq1731886 Length=127 Score = 102 bits (112), Expect = 9e-20 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 38 TACGCCATTCGTGCAGGTCGGAACTTGCCCGACAAGGAATTTCGCTACCTTAGGACCGTT 97 Query 173 A 173 | Sbjct 98 A 98 >seq1652035 Length=127 Score = 102 bits (112), Expect = 9e-20 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 110 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTCCCTTAGGACCGTT 51 Query 173 A 173 | Sbjct 50 A 50 >seq2033025 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 96/128 (75%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 29 CTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCA 88 |||| |||| ||||| || | |||||||||| | | | ||||||||||||| || Sbjct 1 CTTTCCGTCTAGCCGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAG-TCT 59 Query 89 CGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAA 147 ||| | |||||| ||| ||||||||||||||||||||||||||||||| Sbjct 60 CGGGCGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 119 Query 148 GGAATTTC 155 |||||||| Sbjct 120 GGAATTTC 127 >seq2033024 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 96/128 (75%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 29 CTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCA 88 |||| |||| ||||| || | |||||||||| | | | ||||||||||||| || Sbjct 1 CTTTCCGTCTAGCCGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAG-TCT 59 Query 89 CGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAA 147 ||| | |||||| ||| ||||||||||||||||||||||||||||||| Sbjct 60 CGGGAGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 119 Query 148 GGAATTTC 155 |||||||| Sbjct 120 GGAATTTC 127 >seq1856775 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 96/128 (75%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 29 CTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCA 88 |||| |||| ||||| || | |||||||||| | | | ||||||||||||| || Sbjct 127 CTTTCCGTCTAGCCGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAG-TCT 69 Query 89 CGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAA 147 ||| | |||||| ||| ||||||||||||||||||||||||||||||| Sbjct 68 CGGGGGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 9 Query 148 GGAATTTC 155 |||||||| Sbjct 8 GGAATTTC 1 >seq2127003 Length=127 Score = 87.8 bits (96), Expect = 2e-15 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 126 CAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 48 >seq2096280 Length=127 Score = 82.4 bits (90), Expect = 8e-14 Identities = 45/45 (100%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 129 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530827803189