Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001151.1
Length=269
Score E
Sequences producing significant alignments: (Bits) Value
seq3086915 257 2e-66
seq2701097 226 4e-57
seq2690111 224 1e-56
seq2959243 206 4e-51
seq2719848 170 3e-40
seq2716505 163 4e-38
seq206830 116 5e-24
seq2969794 113 7e-23
seq2519822 73.4 6e-11
>seq3086915
Length=4427
Score = 257 bits (284), Expect = 2e-66
Identities = 215/253 (85%), Gaps = 9/253 (4%)
Strand=Plus/Minus
Query 2 CCGCAGAAACGCCGGGTTTCCACAGGCGTACCGGCGCCGGCCCCTTCGCCCTTCGGGCAG 61
||||||||| ||||||| |||||| | |||||||||||||| || |||| ||||||
Sbjct 244 CCGCAGAAAT-CCGGGTT-CCACAGATGCACCGGCGCCGGCCCTTTG--CCTTTGGGCAG 189
Query 62 TTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGGCATCTCCTGTGTCT 121
|| | ||||||||||| || |||||| ||||| ||||||||| ||| |||||| | ||
Sbjct 188 TT-GCGCCAACAGATCATT-GGCCTT-GGCGGTATCGGTCATGGGGG-TCTCCTCAG-CT 134
Query 122 TACTGATCGCTCATGCCCAGCAGGCCACGGGCGTATTTGGCCAGGGGGCGGGCGATCAGG 181
||||||| ||||||||| |||| ||| |||||||| | ||||||||| ||||| |||||
Sbjct 133 TACTGATTGCTCATGCCGAGCAAGCCTCGGGCGTACTGGGCCAGGGGCCGGGCAATCAGA 74
Query 182 TCTTCTGGCTTGTTGTCGTGGAACGTCAGTAAACCGCCACGGCTGCGAATACGCACAGTA 241
|||| |||| ||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 73 TCTTGTGGCGTGTTGTCGTGGAACGTCAGTAAACCGCCACGACTGCGAATGCGTGCAGTA 14
Query 242 TCAATCAAATACT 254
|||||||||||||
Sbjct 13 TCAATCAAATACT 1
>seq2701097
Length=198
Score = 226 bits (250), Expect = 4e-57
Identities = 175/202 (87%), Gaps = 7/202 (3%)
Strand=Plus/Plus
Query 58 GCAGTTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGGCATCTCCTGT 117
|||||| ||||||| ||||| || |||||| ||||||||||||||||||| |||||| |
Sbjct 1 GCAGTT-GGGCCAATAGATCATT-GGCCTT-GGCGGAATCGGTCATAGGGT-TCTCCTCT 56
Query 118 G---TCTTACTGATCGCTCATGCCCAGCAGGCCACGGGCGTATTTGGCCAGGGGGCGGGC 174
| | ||| ||||| | ||| |||| |||||| |||||||||| |||||| ||||||||
Sbjct 57 GGATTTTTATTGATCCCCCATCCCCAACAGGCCGCGGGCGTATTGGGCCAGCGGGCGGGC 116
Query 175 GATCAGGTCTTCTGGCTTGTTGTCGTGGAACGTCAGTAAACCGCCACGGCTGCGAATACG 234
|||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 117 AATCAAGTCTTCTGGCTTATTGTCGTGGAACGTCAGTAAACCGCCACGACTGCGAATGCG 176
Query 235 CACAGTATCAATCAAATACTGG 256
||||||||||||||||||||
Sbjct 177 TGCAGTATCAATCAAATACTGG 198
>seq2690111
Length=195
Score = 224 bits (248), Expect = 1e-56
Identities = 173/199 (87%), Gaps = 6/199 (3%)
Strand=Plus/Plus
Query 58 GCAGTTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGGCATCTCCTGT 117
|||||| ||||||| ||||| || |||||| ||||||||||||||||||| |||||| |
Sbjct 1 GCAGTT-GGGCCAATAGATCATT-GGCCTT-GGCGGAATCGGTCATAGGGT-TCTCCTCT 56
Query 118 G--TCTTACTGATCGCTCATGCCCAGCAGGCCACGGGCGTATTTGGCCAGGGGGCGGGCG 175
| | ||| ||||| | ||| |||| |||||| |||||||||| ||||| ||||||||
Sbjct 57 GGATTTTATTGATCACCCATTCCCAACAGGCCGCGGGCGTATTGGGCCAACGGGCGGGCA 116
Query 176 ATCAGGTCTTCTGGCTTGTTGTCGTGGAACGTCAGTAAACCGCCACGGCTGCGAATACGC 235
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 117 ATCAAGTCTTCTGGCTTGTTGTCGTGGAACGTCAGTAAACCGCCACGACTGCGAATGCGT 176
Query 236 ACAGTATCAATCAAATACT 254
||||||||||||||||||
Sbjct 177 GCAGTATCAATCAAATACT 195
>seq2959243
Length=475
Score = 206 bits (228), Expect = 4e-51
Identities = 128/137 (93%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 133 CATGCCCAGCAGGCCACGGGCGTATTTGGCCAGGGGGCGGGCGATCAGGTCTTCTGGCTT 192
||||||||||||||| |||||||| | |||||||||||||| ||||| |||||||||||
Sbjct 473 CATGCCCAGCAGGCCGCGGGCGTACTGCGCCAGGGGGCGGGCAATCAGATCTTCTGGCTT 414
Query 193 GTTGTCGTGGAACGTCAGTAAACCGCCACGGCTGCGAATACGCACAGTATCAATCAAATA 252
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 413 GTTGTCGTGGAACGTCAGTAAACCGCCACGACTGCGAATACGTGCAGTATCAATCAAATA 354
Query 253 CTGGGTGCTGGTCTCGA 269
|||||||||||||||||
Sbjct 353 CTGGGTGCTGGTCTCGA 337
>seq2719848
Length=203
Score = 170 bits (188), Expect = 3e-40
Identities = 162/197 (82%), Gaps = 15/197 (8%)
Strand=Plus/Plus
Query 2 CCGCAGAAACGCCGGGTTTCCACAGGCGTACCGGCGCCGGCCCCTTCGCCCTTCGGGCAG 61
||||||||| | || ||||||||| | ||||| ||||||||||| |||||| |||||
Sbjct 17 CCGCAGAAATCC--GGATTCCACAGGTGCACCGGTGCCGGCCCCTT-GCCCTT-GGGCAA 72
Query 62 TTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGGCA--TCTCCT---G 116
|| | ||||||||||| || |||||| ||||||||||| ||| ||| |||||| |
Sbjct 73 TT-GAGCCAACAGATCATT-GGCCTT-GGCGGAATCGGACAT---GCAGTTCTCCTTGAG 126
Query 117 TGTCTTACTGATCGCTCATGCCCAGCAGGCCACGGGCGTATTTGGCCAGGGGGCGGGCGA 176
| | ||||||||| | ||||||||||||||| |||||||| | |||||||||||||| |
Sbjct 127 TTTTTTACTGATCTCCCATGCCCAGCAGGCCGCGGGCGTACTGCGCCAGGGGGCGGGCAA 186
Query 177 TCAGGTCTTCTGGCTTG 193
|||| ||||||||||||
Sbjct 187 TCAGATCTTCTGGCTTG 203
>seq2716505
Length=202
Score = 163 bits (180), Expect = 4e-38
Identities = 160/196 (82%), Gaps = 14/196 (7%)
Strand=Plus/Plus
Query 2 CCGCAGAAACGCCGGGTTTCCACAGGCGTACCGGCGCCGGCCCCTTCGCCCTTCGGGCAG 61
||||||||| | || ||||||||| | ||||| ||||||||||| |||| ||||||
Sbjct 17 CCGCAGAAATCC--GGATTCCACAGGTGCACCGGTGCCGGCCCCTTG--CCTTTGGGCAG 72
Query 62 TTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGGCA--TCTCCT-GTG 118
|| | |||||||| || || |||||| ||||||||||| ||| ||| |||||| | |
Sbjct 73 TT-GAGCCAACAGGTCATT-GGCCTT-GGCGGAATCGGACAT---GCAGTTCTCCTTGAG 126
Query 119 TCTT-ACTGATCGCTCATGCCCAGCAGGCCACGGGCGTATTTGGCCAGGGGGCGGGCGAT 177
| || ||||||| | ||||||||||||||| |||||||| | |||||||||||||| ||
Sbjct 127 TTTTTACTGATCCCCCATGCCCAGCAGGCCGCGGGCGTACTGCGCCAGGGGGCGGGCAAT 186
Query 178 CAGGTCTTCTGGCTTG 193
||| ||||||||||||
Sbjct 187 CAGATCTTCTGGCTTG 202
>seq206830
Length=2427
Score = 116 bits (128), Expect = 5e-24
Identities = 95/106 (90%), Gaps = 7/106 (7%)
Strand=Plus/Minus
Query 2 CCGCAGAAACGCCGGGTTTCCACAGGCGTACCGGCGCCGGCCCCTTCGCCCTTCGGGCAG 61
||||||||| ||||||| ||||||| ||||||||||||||||||| |||||| ||||||
Sbjct 105 CCGCAGAAAT-CCGGGTT-CCACAGGTGTACCGGCGCCGGCCCCTT-GCCCTT-GGGCAG 50
Query 62 TTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGG 107
|| ||||||| ||||| || |||||| |||||||||||||||||||
Sbjct 49 TT-GGGCCAATAGATCATT-GGCCTT-GGCGGAATCGGTCATAGGG 7
>seq2969794
Length=514
Score = 113 bits (124), Expect = 7e-23
Identities = 94/106 (89%), Gaps = 7/106 (7%)
Strand=Plus/Minus
Query 2 CCGCAGAAACGCCGGGTTTCCACAGGCGTACCGGCGCCGGCCCCTTCGCCCTTCGGGCAG 61
||||||||| ||||||| ||||||| ||||||||||||| ||||| |||||| ||||||
Sbjct 105 CCGCAGAAAT-CCGGGTT-CCACAGGTGTACCGGCGCCGG-CCCTTTGCCCTT-GGGCAG 50
Query 62 TTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGG 107
|| ||||||| ||||| || |||||| |||||||||||||||||||
Sbjct 49 TT-GGGCCAATAGATCATT-GGCCTT-GGCGGAATCGGTCATAGGG 7
>seq2519822
Length=169
Score = 73.4 bits (80), Expect = 6e-11
Identities = 46/50 (92%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 220 ACGGCTGCGAATACGCACAGTATCAATCAAATACTGGGTGCTGGTCTCGA 269
||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 169 ACGACTGCGAATGCGTGCAGTATCAATCAAATACTGGGTGCTGGTCTCGA 120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 738812965842
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |