Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001151.1 Length=269 Score E Sequences producing significant alignments: (Bits) Value seq3086915 257 2e-66 seq2701097 226 4e-57 seq2690111 224 1e-56 seq2959243 206 4e-51 seq2719848 170 3e-40 seq2716505 163 4e-38 seq206830 116 5e-24 seq2969794 113 7e-23 seq2519822 73.4 6e-11 >seq3086915 Length=4427 Score = 257 bits (284), Expect = 2e-66 Identities = 215/253 (85%), Gaps = 9/253 (4%) Strand=Plus/Minus Query 2 CCGCAGAAACGCCGGGTTTCCACAGGCGTACCGGCGCCGGCCCCTTCGCCCTTCGGGCAG 61 ||||||||| ||||||| |||||| | |||||||||||||| || |||| |||||| Sbjct 244 CCGCAGAAAT-CCGGGTT-CCACAGATGCACCGGCGCCGGCCCTTTG--CCTTTGGGCAG 189 Query 62 TTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGGCATCTCCTGTGTCT 121 || | ||||||||||| || |||||| ||||| ||||||||| ||| |||||| | || Sbjct 188 TT-GCGCCAACAGATCATT-GGCCTT-GGCGGTATCGGTCATGGGGG-TCTCCTCAG-CT 134 Query 122 TACTGATCGCTCATGCCCAGCAGGCCACGGGCGTATTTGGCCAGGGGGCGGGCGATCAGG 181 ||||||| ||||||||| |||| ||| |||||||| | ||||||||| ||||| ||||| Sbjct 133 TACTGATTGCTCATGCCGAGCAAGCCTCGGGCGTACTGGGCCAGGGGCCGGGCAATCAGA 74 Query 182 TCTTCTGGCTTGTTGTCGTGGAACGTCAGTAAACCGCCACGGCTGCGAATACGCACAGTA 241 |||| |||| ||||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct 73 TCTTGTGGCGTGTTGTCGTGGAACGTCAGTAAACCGCCACGACTGCGAATGCGTGCAGTA 14 Query 242 TCAATCAAATACT 254 ||||||||||||| Sbjct 13 TCAATCAAATACT 1 >seq2701097 Length=198 Score = 226 bits (250), Expect = 4e-57 Identities = 175/202 (87%), Gaps = 7/202 (3%) Strand=Plus/Plus Query 58 GCAGTTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGGCATCTCCTGT 117 |||||| ||||||| ||||| || |||||| ||||||||||||||||||| |||||| | Sbjct 1 GCAGTT-GGGCCAATAGATCATT-GGCCTT-GGCGGAATCGGTCATAGGGT-TCTCCTCT 56 Query 118 G---TCTTACTGATCGCTCATGCCCAGCAGGCCACGGGCGTATTTGGCCAGGGGGCGGGC 174 | | ||| ||||| | ||| |||| |||||| |||||||||| |||||| |||||||| Sbjct 57 GGATTTTTATTGATCCCCCATCCCCAACAGGCCGCGGGCGTATTGGGCCAGCGGGCGGGC 116 Query 175 GATCAGGTCTTCTGGCTTGTTGTCGTGGAACGTCAGTAAACCGCCACGGCTGCGAATACG 234 |||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct 117 AATCAAGTCTTCTGGCTTATTGTCGTGGAACGTCAGTAAACCGCCACGACTGCGAATGCG 176 Query 235 CACAGTATCAATCAAATACTGG 256 |||||||||||||||||||| Sbjct 177 TGCAGTATCAATCAAATACTGG 198 >seq2690111 Length=195 Score = 224 bits (248), Expect = 1e-56 Identities = 173/199 (87%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 58 GCAGTTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGGCATCTCCTGT 117 |||||| ||||||| ||||| || |||||| ||||||||||||||||||| |||||| | Sbjct 1 GCAGTT-GGGCCAATAGATCATT-GGCCTT-GGCGGAATCGGTCATAGGGT-TCTCCTCT 56 Query 118 G--TCTTACTGATCGCTCATGCCCAGCAGGCCACGGGCGTATTTGGCCAGGGGGCGGGCG 175 | | ||| ||||| | ||| |||| |||||| |||||||||| ||||| |||||||| Sbjct 57 GGATTTTATTGATCACCCATTCCCAACAGGCCGCGGGCGTATTGGGCCAACGGGCGGGCA 116 Query 176 ATCAGGTCTTCTGGCTTGTTGTCGTGGAACGTCAGTAAACCGCCACGGCTGCGAATACGC 235 |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 117 ATCAAGTCTTCTGGCTTGTTGTCGTGGAACGTCAGTAAACCGCCACGACTGCGAATGCGT 176 Query 236 ACAGTATCAATCAAATACT 254 |||||||||||||||||| Sbjct 177 GCAGTATCAATCAAATACT 195 >seq2959243 Length=475 Score = 206 bits (228), Expect = 4e-51 Identities = 128/137 (93%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 133 CATGCCCAGCAGGCCACGGGCGTATTTGGCCAGGGGGCGGGCGATCAGGTCTTCTGGCTT 192 ||||||||||||||| |||||||| | |||||||||||||| ||||| ||||||||||| Sbjct 473 CATGCCCAGCAGGCCGCGGGCGTACTGCGCCAGGGGGCGGGCAATCAGATCTTCTGGCTT 414 Query 193 GTTGTCGTGGAACGTCAGTAAACCGCCACGGCTGCGAATACGCACAGTATCAATCAAATA 252 |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 413 GTTGTCGTGGAACGTCAGTAAACCGCCACGACTGCGAATACGTGCAGTATCAATCAAATA 354 Query 253 CTGGGTGCTGGTCTCGA 269 ||||||||||||||||| Sbjct 353 CTGGGTGCTGGTCTCGA 337 >seq2719848 Length=203 Score = 170 bits (188), Expect = 3e-40 Identities = 162/197 (82%), Gaps = 15/197 (8%) Strand=Plus/Plus Query 2 CCGCAGAAACGCCGGGTTTCCACAGGCGTACCGGCGCCGGCCCCTTCGCCCTTCGGGCAG 61 ||||||||| | || ||||||||| | ||||| ||||||||||| |||||| ||||| Sbjct 17 CCGCAGAAATCC--GGATTCCACAGGTGCACCGGTGCCGGCCCCTT-GCCCTT-GGGCAA 72 Query 62 TTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGGCA--TCTCCT---G 116 || | ||||||||||| || |||||| ||||||||||| ||| ||| |||||| | Sbjct 73 TT-GAGCCAACAGATCATT-GGCCTT-GGCGGAATCGGACAT---GCAGTTCTCCTTGAG 126 Query 117 TGTCTTACTGATCGCTCATGCCCAGCAGGCCACGGGCGTATTTGGCCAGGGGGCGGGCGA 176 | | ||||||||| | ||||||||||||||| |||||||| | |||||||||||||| | Sbjct 127 TTTTTTACTGATCTCCCATGCCCAGCAGGCCGCGGGCGTACTGCGCCAGGGGGCGGGCAA 186 Query 177 TCAGGTCTTCTGGCTTG 193 |||| |||||||||||| Sbjct 187 TCAGATCTTCTGGCTTG 203 >seq2716505 Length=202 Score = 163 bits (180), Expect = 4e-38 Identities = 160/196 (82%), Gaps = 14/196 (7%) Strand=Plus/Plus Query 2 CCGCAGAAACGCCGGGTTTCCACAGGCGTACCGGCGCCGGCCCCTTCGCCCTTCGGGCAG 61 ||||||||| | || ||||||||| | ||||| ||||||||||| |||| |||||| Sbjct 17 CCGCAGAAATCC--GGATTCCACAGGTGCACCGGTGCCGGCCCCTTG--CCTTTGGGCAG 72 Query 62 TTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGGCA--TCTCCT-GTG 118 || | |||||||| || || |||||| ||||||||||| ||| ||| |||||| | | Sbjct 73 TT-GAGCCAACAGGTCATT-GGCCTT-GGCGGAATCGGACAT---GCAGTTCTCCTTGAG 126 Query 119 TCTT-ACTGATCGCTCATGCCCAGCAGGCCACGGGCGTATTTGGCCAGGGGGCGGGCGAT 177 | || ||||||| | ||||||||||||||| |||||||| | |||||||||||||| || Sbjct 127 TTTTTACTGATCCCCCATGCCCAGCAGGCCGCGGGCGTACTGCGCCAGGGGGCGGGCAAT 186 Query 178 CAGGTCTTCTGGCTTG 193 ||| |||||||||||| Sbjct 187 CAGATCTTCTGGCTTG 202 >seq206830 Length=2427 Score = 116 bits (128), Expect = 5e-24 Identities = 95/106 (90%), Gaps = 7/106 (7%) Strand=Plus/Minus Query 2 CCGCAGAAACGCCGGGTTTCCACAGGCGTACCGGCGCCGGCCCCTTCGCCCTTCGGGCAG 61 ||||||||| ||||||| ||||||| ||||||||||||||||||| |||||| |||||| Sbjct 105 CCGCAGAAAT-CCGGGTT-CCACAGGTGTACCGGCGCCGGCCCCTT-GCCCTT-GGGCAG 50 Query 62 TTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGG 107 || ||||||| ||||| || |||||| ||||||||||||||||||| Sbjct 49 TT-GGGCCAATAGATCATT-GGCCTT-GGCGGAATCGGTCATAGGG 7 >seq2969794 Length=514 Score = 113 bits (124), Expect = 7e-23 Identities = 94/106 (89%), Gaps = 7/106 (7%) Strand=Plus/Minus Query 2 CCGCAGAAACGCCGGGTTTCCACAGGCGTACCGGCGCCGGCCCCTTCGCCCTTCGGGCAG 61 ||||||||| ||||||| ||||||| ||||||||||||| ||||| |||||| |||||| Sbjct 105 CCGCAGAAAT-CCGGGTT-CCACAGGTGTACCGGCGCCGG-CCCTTTGCCCTT-GGGCAG 50 Query 62 TTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCGGTCATAGGG 107 || ||||||| ||||| || |||||| ||||||||||||||||||| Sbjct 49 TT-GGGCCAATAGATCATT-GGCCTT-GGCGGAATCGGTCATAGGG 7 >seq2519822 Length=169 Score = 73.4 bits (80), Expect = 6e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 220 ACGGCTGCGAATACGCACAGTATCAATCAAATACTGGGTGCTGGTCTCGA 269 ||| |||||||| || ||||||||||||||||||||||||||||||||| Sbjct 169 ACGACTGCGAATGCGTGCAGTATCAATCAAATACTGGGTGCTGGTCTCGA 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738812965842