Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001161.1
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
seq3027863 360 4e-97
seq2832307 279 1e-72
seq2891743 262 8e-68
seq2581873 199 8e-49
seq2581872 196 1e-47
seq1262205 185 2e-44
seq2383934 156 9e-36
seq2321415 152 1e-34
seq2303945 143 6e-32
seq1493736 105 1e-20
seq2376837 95.1 3e-17
seq153501 95.1 3e-17
>seq3027863
Length=874
Score = 360 bits (398), Expect = 4e-97
Identities = 248/275 (90%), Gaps = 4/275 (1%)
Strand=Plus/Minus
Query 101 GGCCGGATTGGCCTAAAAGTTGGCGGCGATTATAGGCACATTCTGGCGCCGATGCCATTG 160
|||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| |
Sbjct 871 GGCCGGATTGGCCTAAAAGT-GGCGGCGATTATAGGCATATTCTGACGCCGATGCCAT-G 814
Query 161 CGCCAGAACGTCGTACGGTCATTCGTCTTTGCGGCTGATAACGCGGGTCGCTGGCTTGCA 220
||||| | ||||||||||||||||| | | ||||||| ||||||||||||| ||||||||
Sbjct 813 CGCCA-AGCGTCGTACGGTCATTCGCCCT-GCGGCTGGTAACGCGGGTCGCGGGCTTGCA 756
Query 221 GTTGGTGCAGGCGGGCCAGGGTGTCCTGGCGATAAAAGCGGCTGAGTTGGGCGTACACCT 280
|||| | |||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 755 GTTGATTCAGGCGGGCCAGGGGATCCTGGCGGTAGAAGCGGCTGAGTTGGGCGTACACCT 696
Query 281 GTGGATAACGATTGACCAGTAAATCCGGGGCGCTGAAAAAGTATTCGCTGGTGACGGCAA 340
||||||||| ||| |||| ||||||||||| ||||| || || |||||||||||||| |
Sbjct 695 GTGGATAACTGTTGGCCAGCAAATCCGGGGCACTGAAGAAATACTCGCTGGTGACGGCGA 636
Query 341 AGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 375
|||| ||||||||||||||||||||||||||||||
Sbjct 635 AGAATTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 601
>seq2832307
Length=255
Score = 279 bits (308), Expect = 1e-72
Identities = 217/255 (85%), Gaps = 3/255 (1%)
Strand=Plus/Minus
Query 121 TGGCGGCGATTATAGGCACATTCTGGCGCCGATGCCATTGCGCCAGAACGTCGTACGGTC 180
|||||||||||||||||| |||||| |||||||||||| ||| |||| |||||| ||
Sbjct 252 TGGCGGCGATTATAGGCATATTCTGACGCCGATGCCAT-GCGTCAGA-CGTCGTGTGGCG 195
Query 181 ATTCGTCTTTGCGGCTGATAACGCGGGTCGCTGGCTTGCAGTTGGTGCAGGCGGGCCAGG 240
| | | || | ||| || || | |||| || ||||||||| ||||||||||||||
Sbjct 194 CCTGG-CGTTCAGTCTGGTAGCGGGCATCGCCGGTTTGCAGTTGATGCAGGCGGGCCAGC 136
Query 241 GTGTCCTGGCGATAAAAGCGGCTGAGTTGGGCGTACACCTGTGGATAACGATTGACCAGT 300
| |||||||||||| |||||||| ||||| ||||||||||| |||||| |||||||
Sbjct 135 GGGTCCTGGCGATAGAAGCGGCTCAGTTGCGCGTACACCTGGGGATAAGTGCCGACCAGT 76
Query 301 AAATCCGGGGCGCTGAAAAAGTATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCG 360
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 75 AAATCCGGGGCACTGAAAAAATATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCG 16
Query 361 GCGGCGTAGGGGTCG 375
|||||||||||||||
Sbjct 15 GCGGCGTAGGGGTCG 1
>seq2891743
Length=318
Score = 262 bits (290), Expect = 8e-68
Identities = 213/254 (84%), Gaps = 3/254 (1%)
Strand=Plus/Plus
Query 121 TGGCGGCGATTATAGGCACATTCTGGCGCCGATGCCATTGCGCCAGAACGTCGTACGGTC 180
|||||||||||||||||| |||||| |||||||||||| ||| |||| |||||| || |
Sbjct 4 TGGCGGCGATTATAGGCATATTCTGACGCCGATGCCAT-GCGTCAGA-CGTCGTGTGG-C 60
Query 181 ATTCGTCTTTGCGGCTGATAACGCGGGTCGCTGGCTTGCAGTTGGTGCAGGCGGGCCAGG 240
| || | ||| || || | |||| || ||||||||||||||||||||||||
Sbjct 61 GCCAGCGGTTCAGTCTGGTAGCGGGCATCGCCGGTTTGCAGTTGGTGCAGGCGGGCCAGC 120
Query 241 GTGTCCTGGCGATAAAAGCGGCTGAGTTGGGCGTACACCTGTGGATAACGATTGACCAGT 300
| ||||||||||||||||||||| ||||| ||||||||||| |||||| | |||||
Sbjct 121 GGGTCCTGGCGATAAAAGCGGCTCAGTTGCGCGTACACCTGGGGATAAGTGCCGGCCAGT 180
Query 301 AAATCCGGGGCGCTGAAAAAGTATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCG 360
||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 AAATCCGGGGCACTGAAAAAATATTCGCTGGTGACGGCAAAGAATTCCGCCGGGTTCTCG 240
Query 361 GCGGCGTAGGGGTC 374
|||||||| |||||
Sbjct 241 GCGGCGTAAGGGTC 254
>seq2581873
Length=178
Score = 199 bits (220), Expect = 8e-49
Identities = 154/179 (86%), Gaps = 3/179 (2%)
Strand=Plus/Minus
Query 140 ATTCTGGCGCCGATGCCATTGCGCCAGAACGTCGTACGGTCATTCGTCTTTGCGGCTGAT 199
|||||| |||||||||||| ||| |||| |||||||||| | | | || || |||||
Sbjct 176 ATTCTGACGCCGATGCCAT-GCGTCAGA-CGTCGTACGGCGCGTGG-CGTTCCGTCTGAT 120
Query 200 AACGCGGGTCGCTGGCTTGCAGTTGGTGCAGGCGGGCCAGGGTGTCCTGGCGATAAAAGC 259
| || | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 119 AGCGTGCGTCGCTGGCTTGCAGTTGGTGCAGGCGGGCCAGGGGATCCTGGCGATAGAAGC 60
Query 260 GGCTGAGTTGGGCGTACACCTGTGGATAACGATTGACCAGTAAATCCGGGGCGCTGAAA 318
|||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 59 GGCTCAGTTGCGCGTACACCTGTGGATAAGTGCTGACCAGTAAATCCGGGGCGCTGAAA 1
>seq2581872
Length=178
Score = 196 bits (216), Expect = 1e-47
Identities = 153/179 (85%), Gaps = 3/179 (2%)
Strand=Plus/Minus
Query 140 ATTCTGGCGCCGATGCCATTGCGCCAGAACGTCGTACGGTCATTCGTCTTTGCGGCTGAT 199
|||||| |||||||||||| ||| |||| |||||||||| | | | || || |||||
Sbjct 176 ATTCTGACGCCGATGCCAT-GCGTCAGA-CGTCGTACGGCGCGTGG-CGTTCCGTCTGAT 120
Query 200 AACGCGGGTCGCTGGCTTGCAGTTGGTGCAGGCGGGCCAGGGTGTCCTGGCGATAAAAGC 259
| |||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||
Sbjct 119 AGCGCGCATCGCTGGCCTGCAGTTGATGCAGGCGGGCCAGGGGATCCTGGCGATAAAAGC 60
Query 260 GGCTGAGTTGGGCGTACACCTGTGGATAACGATTGACCAGTAAATCCGGGGCGCTGAAA 318
|||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 59 GGCTCAGTTGCGCGTACACCTGTGGATAAGTGCTGACCAGTAAATCCGGGGCGCTGAAA 1
>seq1262205
Length=120
Score = 185 bits (204), Expect = 2e-44
Identities = 113/120 (94%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 256 AAGCGGCTGAGTTGGGCGTACACCTGTGGATAACGATTGACCAGTAAATCCGGGGCGCTG 315
|||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AAGCGGCTCAGTTGCGCGTACACCTGTGGATAAGTGCTGACCAGTAAATCCGGGGCGCTG 60
Query 316 AAAAAGTATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 375
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAAAATATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 120
>seq2383934
Length=148
Score = 156 bits (172), Expect = 9e-36
Identities = 138/158 (87%), Gaps = 12/158 (8%)
Strand=Plus/Minus
Query 1 GCGACGTAGAATGTTCGTTTCGGCAGGTCTTTCGCCAGCCGGAATCTTCGCTTGTAGCTT 60
|||||||||| ||| |||| |||||||||||| ||||||||||||||| ||| ||||||
Sbjct 147 GCGACGTAGA-TGT-CGTT-CGGCAGGTCTTT-GCCAGCCGGAATCTT-GCT-GTAGCT- 95
Query 61 CATTCGGGCGTTGCCCCCGTTAATTCGGCCAAGAAACTTCGGCCGGATTGGCCTAAAAGT 120
|||| ||||| ||||||||| | | ||||| |||| | ||||||||||||||||||||
Sbjct 94 CATT-GGGCGGTGCCCCCGT--AGTTGGCCATTAAACAT-GGCCGGATTGGCCTAAAAGT 39
Query 121 TGGCGGCGATTATAGGCACATTCTGGCGCCGATGCCAT 158
||||||||||||||||| |||||| ||||||||||||
Sbjct 38 -GGCGGCGATTATAGGCATATTCTGACGCCGATGCCAT 2
>seq2321415
Length=140
Score = 152 bits (168), Expect = 1e-34
Identities = 124/140 (89%), Gaps = 8/140 (6%)
Strand=Plus/Plus
Query 19 TTCGGCAGGTCTTTCGCCAGCCGGAATCTTCGCTTGTAGCTTCATTCGGGCGTTGCCCCC 78
|||||||||||||| ||||||||||||||| ||| |||||| |||| |||||||||||||
Sbjct 7 TTCGGCAGGTCTTT-GCCAGCCGGAATCTT-GCT-GTAGCT-CATT-GGGCGTTGCCCCC 61
Query 79 GTTAATTCGGCCAAGAAACTTCGGCCGGATTGGCCTAAAAGTTGGCGGCGATTATAGGCA 138
|||| || ||||| || | |||||||||||||||||||| |||||||||||||||||
Sbjct 62 GTTAGTT-GGCCATATGACAT-GGCCGGATTGGCCTAAAAGT-GGCGGCGATTATAGGCA 118
Query 139 CATTCTGGCGCCGATGCCAT 158
|||||| ||||||||||||
Sbjct 119 TATTCTGACGCCGATGCCAT 138
>seq2303945
Length=138
Score = 143 bits (158), Expect = 6e-32
Identities = 122/140 (87%), Gaps = 9/140 (6%)
Strand=Plus/Minus
Query 19 TTCGGCAGGTCTTTCGCCAGCCGGAATCTTCGCTTGTAGCTTCATTCGGGCGTTGCCCCC 78
|||||||||||||| ||||||||||||||| ||| |||||| |||| ||||| |||||||
Sbjct 132 TTCGGCAGGTCTTT-GCCAGCCGGAATCTT-GCT-GTAGCT-CATT-GGGCGATGCCCCC 78
Query 79 GTTAATTCGGCCAAGAAACTTCGGCCGGATTGGCCTAAAAGTTGGCGGCGATTATAGGCA 138
|| | | ||||| ||| | |||||||||||||||||||| |||||||||||||||||
Sbjct 77 GT--AGTTGGCCATTGAACAT-GGCCGGATTGGCCTAAAAGT-GGCGGCGATTATAGGCA 22
Query 139 CATTCTGGCGCCGATGCCAT 158
|||||| ||||||||||||
Sbjct 21 TATTCTGACGCCGATGCCAT 2
>seq1493736
Length=124
Score = 105 bits (116), Expect = 1e-20
Identities = 60/61 (98%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 315 GAAAAAGTATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTC 374
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAAAAATATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTC 60
Query 375 G 375
|
Sbjct 61 G 61
>seq2376837
Length=147
Score = 95.1 bits (104), Expect = 3e-17
Identities = 52/52 (100%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 324 TTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 375
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 TTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 96
>seq153501
Length=583
Score = 95.1 bits (104), Expect = 3e-17
Identities = 52/52 (100%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 324 TTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 375
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 52
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1063700503264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |