Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001161.1 Length=375 Score E Sequences producing significant alignments: (Bits) Value seq3027863 360 4e-97 seq2832307 279 1e-72 seq2891743 262 8e-68 seq2581873 199 8e-49 seq2581872 196 1e-47 seq1262205 185 2e-44 seq2383934 156 9e-36 seq2321415 152 1e-34 seq2303945 143 6e-32 seq1493736 105 1e-20 seq2376837 95.1 3e-17 seq153501 95.1 3e-17 >seq3027863 Length=874 Score = 360 bits (398), Expect = 4e-97 Identities = 248/275 (90%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 101 GGCCGGATTGGCCTAAAAGTTGGCGGCGATTATAGGCACATTCTGGCGCCGATGCCATTG 160 |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| | Sbjct 871 GGCCGGATTGGCCTAAAAGT-GGCGGCGATTATAGGCATATTCTGACGCCGATGCCAT-G 814 Query 161 CGCCAGAACGTCGTACGGTCATTCGTCTTTGCGGCTGATAACGCGGGTCGCTGGCTTGCA 220 ||||| | ||||||||||||||||| | | ||||||| ||||||||||||| |||||||| Sbjct 813 CGCCA-AGCGTCGTACGGTCATTCGCCCT-GCGGCTGGTAACGCGGGTCGCGGGCTTGCA 756 Query 221 GTTGGTGCAGGCGGGCCAGGGTGTCCTGGCGATAAAAGCGGCTGAGTTGGGCGTACACCT 280 |||| | |||||||||||||| |||||||| || ||||||||||||||||||||||||| Sbjct 755 GTTGATTCAGGCGGGCCAGGGGATCCTGGCGGTAGAAGCGGCTGAGTTGGGCGTACACCT 696 Query 281 GTGGATAACGATTGACCAGTAAATCCGGGGCGCTGAAAAAGTATTCGCTGGTGACGGCAA 340 ||||||||| ||| |||| ||||||||||| ||||| || || |||||||||||||| | Sbjct 695 GTGGATAACTGTTGGCCAGCAAATCCGGGGCACTGAAGAAATACTCGCTGGTGACGGCGA 636 Query 341 AGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 375 |||| |||||||||||||||||||||||||||||| Sbjct 635 AGAATTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 601 >seq2832307 Length=255 Score = 279 bits (308), Expect = 1e-72 Identities = 217/255 (85%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 121 TGGCGGCGATTATAGGCACATTCTGGCGCCGATGCCATTGCGCCAGAACGTCGTACGGTC 180 |||||||||||||||||| |||||| |||||||||||| ||| |||| |||||| || Sbjct 252 TGGCGGCGATTATAGGCATATTCTGACGCCGATGCCAT-GCGTCAGA-CGTCGTGTGGCG 195 Query 181 ATTCGTCTTTGCGGCTGATAACGCGGGTCGCTGGCTTGCAGTTGGTGCAGGCGGGCCAGG 240 | | | || | ||| || || | |||| || ||||||||| |||||||||||||| Sbjct 194 CCTGG-CGTTCAGTCTGGTAGCGGGCATCGCCGGTTTGCAGTTGATGCAGGCGGGCCAGC 136 Query 241 GTGTCCTGGCGATAAAAGCGGCTGAGTTGGGCGTACACCTGTGGATAACGATTGACCAGT 300 | |||||||||||| |||||||| ||||| ||||||||||| |||||| ||||||| Sbjct 135 GGGTCCTGGCGATAGAAGCGGCTCAGTTGCGCGTACACCTGGGGATAAGTGCCGACCAGT 76 Query 301 AAATCCGGGGCGCTGAAAAAGTATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCG 360 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 75 AAATCCGGGGCACTGAAAAAATATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCG 16 Query 361 GCGGCGTAGGGGTCG 375 ||||||||||||||| Sbjct 15 GCGGCGTAGGGGTCG 1 >seq2891743 Length=318 Score = 262 bits (290), Expect = 8e-68 Identities = 213/254 (84%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 121 TGGCGGCGATTATAGGCACATTCTGGCGCCGATGCCATTGCGCCAGAACGTCGTACGGTC 180 |||||||||||||||||| |||||| |||||||||||| ||| |||| |||||| || | Sbjct 4 TGGCGGCGATTATAGGCATATTCTGACGCCGATGCCAT-GCGTCAGA-CGTCGTGTGG-C 60 Query 181 ATTCGTCTTTGCGGCTGATAACGCGGGTCGCTGGCTTGCAGTTGGTGCAGGCGGGCCAGG 240 | || | ||| || || | |||| || |||||||||||||||||||||||| Sbjct 61 GCCAGCGGTTCAGTCTGGTAGCGGGCATCGCCGGTTTGCAGTTGGTGCAGGCGGGCCAGC 120 Query 241 GTGTCCTGGCGATAAAAGCGGCTGAGTTGGGCGTACACCTGTGGATAACGATTGACCAGT 300 | ||||||||||||||||||||| ||||| ||||||||||| |||||| | ||||| Sbjct 121 GGGTCCTGGCGATAAAAGCGGCTCAGTTGCGCGTACACCTGGGGATAAGTGCCGGCCAGT 180 Query 301 AAATCCGGGGCGCTGAAAAAGTATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCG 360 ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||| Sbjct 181 AAATCCGGGGCACTGAAAAAATATTCGCTGGTGACGGCAAAGAATTCCGCCGGGTTCTCG 240 Query 361 GCGGCGTAGGGGTC 374 |||||||| ||||| Sbjct 241 GCGGCGTAAGGGTC 254 >seq2581873 Length=178 Score = 199 bits (220), Expect = 8e-49 Identities = 154/179 (86%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 140 ATTCTGGCGCCGATGCCATTGCGCCAGAACGTCGTACGGTCATTCGTCTTTGCGGCTGAT 199 |||||| |||||||||||| ||| |||| |||||||||| | | | || || ||||| Sbjct 176 ATTCTGACGCCGATGCCAT-GCGTCAGA-CGTCGTACGGCGCGTGG-CGTTCCGTCTGAT 120 Query 200 AACGCGGGTCGCTGGCTTGCAGTTGGTGCAGGCGGGCCAGGGTGTCCTGGCGATAAAAGC 259 | || | ||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 119 AGCGTGCGTCGCTGGCTTGCAGTTGGTGCAGGCGGGCCAGGGGATCCTGGCGATAGAAGC 60 Query 260 GGCTGAGTTGGGCGTACACCTGTGGATAACGATTGACCAGTAAATCCGGGGCGCTGAAA 318 |||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 59 GGCTCAGTTGCGCGTACACCTGTGGATAAGTGCTGACCAGTAAATCCGGGGCGCTGAAA 1 >seq2581872 Length=178 Score = 196 bits (216), Expect = 1e-47 Identities = 153/179 (85%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 140 ATTCTGGCGCCGATGCCATTGCGCCAGAACGTCGTACGGTCATTCGTCTTTGCGGCTGAT 199 |||||| |||||||||||| ||| |||| |||||||||| | | | || || ||||| Sbjct 176 ATTCTGACGCCGATGCCAT-GCGTCAGA-CGTCGTACGGCGCGTGG-CGTTCCGTCTGAT 120 Query 200 AACGCGGGTCGCTGGCTTGCAGTTGGTGCAGGCGGGCCAGGGTGTCCTGGCGATAAAAGC 259 | |||| |||||||| |||||||| |||||||||||||||| |||||||||||||||| Sbjct 119 AGCGCGCATCGCTGGCCTGCAGTTGATGCAGGCGGGCCAGGGGATCCTGGCGATAAAAGC 60 Query 260 GGCTGAGTTGGGCGTACACCTGTGGATAACGATTGACCAGTAAATCCGGGGCGCTGAAA 318 |||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 59 GGCTCAGTTGCGCGTACACCTGTGGATAAGTGCTGACCAGTAAATCCGGGGCGCTGAAA 1 >seq1262205 Length=120 Score = 185 bits (204), Expect = 2e-44 Identities = 113/120 (94%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 256 AAGCGGCTGAGTTGGGCGTACACCTGTGGATAACGATTGACCAGTAAATCCGGGGCGCTG 315 |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 AAGCGGCTCAGTTGCGCGTACACCTGTGGATAAGTGCTGACCAGTAAATCCGGGGCGCTG 60 Query 316 AAAAAGTATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 375 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAAAAATATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 120 >seq2383934 Length=148 Score = 156 bits (172), Expect = 9e-36 Identities = 138/158 (87%), Gaps = 12/158 (8%) Strand=Plus/Minus Query 1 GCGACGTAGAATGTTCGTTTCGGCAGGTCTTTCGCCAGCCGGAATCTTCGCTTGTAGCTT 60 |||||||||| ||| |||| |||||||||||| ||||||||||||||| ||| |||||| Sbjct 147 GCGACGTAGA-TGT-CGTT-CGGCAGGTCTTT-GCCAGCCGGAATCTT-GCT-GTAGCT- 95 Query 61 CATTCGGGCGTTGCCCCCGTTAATTCGGCCAAGAAACTTCGGCCGGATTGGCCTAAAAGT 120 |||| ||||| ||||||||| | | ||||| |||| | |||||||||||||||||||| Sbjct 94 CATT-GGGCGGTGCCCCCGT--AGTTGGCCATTAAACAT-GGCCGGATTGGCCTAAAAGT 39 Query 121 TGGCGGCGATTATAGGCACATTCTGGCGCCGATGCCAT 158 ||||||||||||||||| |||||| |||||||||||| Sbjct 38 -GGCGGCGATTATAGGCATATTCTGACGCCGATGCCAT 2 >seq2321415 Length=140 Score = 152 bits (168), Expect = 1e-34 Identities = 124/140 (89%), Gaps = 8/140 (6%) Strand=Plus/Plus Query 19 TTCGGCAGGTCTTTCGCCAGCCGGAATCTTCGCTTGTAGCTTCATTCGGGCGTTGCCCCC 78 |||||||||||||| ||||||||||||||| ||| |||||| |||| ||||||||||||| Sbjct 7 TTCGGCAGGTCTTT-GCCAGCCGGAATCTT-GCT-GTAGCT-CATT-GGGCGTTGCCCCC 61 Query 79 GTTAATTCGGCCAAGAAACTTCGGCCGGATTGGCCTAAAAGTTGGCGGCGATTATAGGCA 138 |||| || ||||| || | |||||||||||||||||||| ||||||||||||||||| Sbjct 62 GTTAGTT-GGCCATATGACAT-GGCCGGATTGGCCTAAAAGT-GGCGGCGATTATAGGCA 118 Query 139 CATTCTGGCGCCGATGCCAT 158 |||||| |||||||||||| Sbjct 119 TATTCTGACGCCGATGCCAT 138 >seq2303945 Length=138 Score = 143 bits (158), Expect = 6e-32 Identities = 122/140 (87%), Gaps = 9/140 (6%) Strand=Plus/Minus Query 19 TTCGGCAGGTCTTTCGCCAGCCGGAATCTTCGCTTGTAGCTTCATTCGGGCGTTGCCCCC 78 |||||||||||||| ||||||||||||||| ||| |||||| |||| ||||| ||||||| Sbjct 132 TTCGGCAGGTCTTT-GCCAGCCGGAATCTT-GCT-GTAGCT-CATT-GGGCGATGCCCCC 78 Query 79 GTTAATTCGGCCAAGAAACTTCGGCCGGATTGGCCTAAAAGTTGGCGGCGATTATAGGCA 138 || | | ||||| ||| | |||||||||||||||||||| ||||||||||||||||| Sbjct 77 GT--AGTTGGCCATTGAACAT-GGCCGGATTGGCCTAAAAGT-GGCGGCGATTATAGGCA 22 Query 139 CATTCTGGCGCCGATGCCAT 158 |||||| |||||||||||| Sbjct 21 TATTCTGACGCCGATGCCAT 2 >seq1493736 Length=124 Score = 105 bits (116), Expect = 1e-20 Identities = 60/61 (98%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 315 GAAAAAGTATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTC 374 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAAAAAATATTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTC 60 Query 375 G 375 | Sbjct 61 G 61 >seq2376837 Length=147 Score = 95.1 bits (104), Expect = 3e-17 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 324 TTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 375 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 147 TTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 96 >seq153501 Length=583 Score = 95.1 bits (104), Expect = 3e-17 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 324 TTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 375 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTCGCTGGTGACGGCAAAGAACTCCGCCGGGTTTTCGGCGGCGTAGGGGTCG 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1063700503264