Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001182.1
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
seq267913 381 8e-104
seq2779880 333 4e-89
seq2799663 293 3e-77
seq2948004 277 3e-72
seq2602258 161 1e-37
seq1993207 125 1e-26
seq1333795 114 2e-23
seq1934015 111 2e-22
seq3088496 102 1e-19
seq3060301 93.3 6e-17
seq964614 80.6 4e-13
seq325660 80.6 4e-13
seq3011491 77.0 5e-12
seq3086750 73.4 6e-11
seq2381131 73.4 6e-11
seq127352 73.4 6e-11
>seq267913
Length=352
Score = 381 bits (422), Expect = 8e-104
Identities = 242/261 (93%), Gaps = 1/261 (0%)
Strand=Plus/Minus
Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60
||||||||||||||||||| || ||||| ||||| | ||| || ||| |||||||||||
Sbjct 311 CGATGCACGCCTTGACGCAACGCGCCAGCACTTCCTGGCGAGCGGTTT-CGTCCAGGCCC 253
Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 252 GGTGCCGGAGCTTCTTCCAGTACCTTTTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 193
Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 192 CCCAGGTGGATCGCGTGGCCCTGGCCGTCGGACAGTACCTGCACTTCCACGTGACGTGGG 133
Query 181 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAG 240
||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 132 TTGGTCAGGTATTTCTCCAGGTAGACCATCGGGTTGCCGAACCAGGCAGCCGCTTCGGAG 73
Query 241 CGAGTCTGCTTGGCCGCTTCG 261
|| ||||||||||| ||||||
Sbjct 72 CGGGTCTGCTTGGCGGCTTCG 52
>seq2779880
Length=225
Score = 333 bits (368), Expect = 4e-89
Identities = 206/219 (94%), Gaps = 1/219 (0%)
Strand=Plus/Minus
Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60
|||||||||||||||||||||||||||| ||||| | |||||| ||| |||||||||||
Sbjct 218 CGATGCACGCCTTGACGCAGCGAGCCAGTACTTCCTGGCGCGCGGTTT-CGTCCAGGCCC 160
Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120
|||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 159 GGTGCCGGAGCTTCTTCCAACACTTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 100
Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 99 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGAACCTGCACTTCCACGTGACGTGGG 40
Query 181 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCG 219
|||||||||||||| ||||||||||||||||||||||||
Sbjct 39 TTGGTCAGGTACTTCTCCAGGTAGACCATCGGGTTGCCG 1
>seq2799663
Length=235
Score = 293 bits (324), Expect = 3e-77
Identities = 182/194 (94%), Gaps = 1/194 (1%)
Strand=Plus/Plus
Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60
||||||||||||||||||| |||||||| ||||| | |||||| ||| | ||||||||
Sbjct 42 CGATGCACGCCTTGACGCAACGAGCCAGTACTTCCTGGCGCGCGGTTT-CATCCAGGCCG 100
Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 101 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGGCGCTGCAGCGAGCAATCGCGGTCG 160
Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 161 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACCTGCACTTCCACGTGACGTGGG 220
Query 181 TTGGTCAGGTACTT 194
||||||||||||||
Sbjct 221 TTGGTCAGGTACTT 234
>seq2948004
Length=439
Score = 277 bits (306), Expect = 3e-72
Identities = 172/183 (94%), Gaps = 1/183 (1%)
Strand=Plus/Plus
Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60
|||||||||||||||||||||||||||||||||| | ||| || |||| ||||||| |||
Sbjct 258 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCCTGGCGGGCCTTTT-CGTCCAGACCC 316
Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 317 GGTGCCGGCGCTTCTTCGAGTACCTTCTGGTGGCGACGTTGCAGCGAGCAATCGCGGTCA 376
Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 377 CCCAGGTGGATCGCGTGGCCCTGGCCGTCGGACAGTACCTGCACTTCCACGTGACGTGGG 436
Query 181 TTG 183
|||
Sbjct 437 TTG 439
>seq2602258
Length=180
Score = 161 bits (178), Expect = 1e-37
Identities = 101/109 (93%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 153 CAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGG 212
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 CAGTACCTGCACTTCCACGTGACGTGGGTTGGTCAGGTACTTCTCCAGGTAGACCATCGG 60
Query 213 GTTGCCGAACCAGGCGCCCGCTTCGGAGCGAGTCTGCTTGGCCGCTTCG 261
||| || |||||||||||||||||||| || ||||||||||| || |||
Sbjct 61 GTTACCAAACCAGGCGCCCGCTTCGGAACGGGTCTGCTTGGCGGCCTCG 109
>seq1993207
Length=127
Score = 125 bits (138), Expect = 1e-26
Identities = 77/82 (94%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 180 GTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGA 239
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 127 GTTGGTCAGGTACTTCTCCAGGTAGACCATCGGGTTGCCGAACCAGGCAGCCGCTTCGGA 68
Query 240 GCGAGTCTGCTTGGCCGCTTCG 261
||| ||||||||||| ||||||
Sbjct 67 GCGCGTCTGCTTGGCAGCTTCG 46
>seq1333795
Length=121
Score = 114 bits (126), Expect = 2e-23
Identities = 71/76 (93%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 186 CAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAGCGAGT 245
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 121 CAGGTACTTCTCCAGGTAGACCATCGGGTTGCCGAACCAGGCAGCCGCTTCGGAGCGGGT 62
Query 246 CTGCTTGGCCGCTTCG 261
||||||||| ||||||
Sbjct 61 CTGCTTGGCAGCTTCG 46
>seq1934015
Length=127
Score = 111 bits (122), Expect = 2e-22
Identities = 70/76 (92%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 186 CAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAGCGAGT 245
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1 CAGGTACTTCTCCAGGTAGACCATCGGGTTGCCGAACCAGGCAGCCGCTTCGGAGCGGGT 60
Query 246 CTGCTTGGCCGCTTCG 261
||| ||||| ||||||
Sbjct 61 CTGTTTGGCGGCTTCG 76
>seq3088496
Length=18757
Score = 102 bits (112), Expect = 1e-19
Identities = 135/183 (74%), Gaps = 6/183 (3%)
Strand=Plus/Minus
Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116
||| || |||||||||||||| || || |||||||| || ||||||| || ||||||||
Sbjct 8685 GCCTGGCGCCGGCGCTTCTTCGAGGACTTTCTGGTGTCGGCGTTGCAAGGAACAATCGCG 8626
Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176
| || || ||| |||||||| ||| | ||| ||| || || | |||||| || ||
Sbjct 8625 GCAACCGAGCCAGATCGCGTGGCCGTGGGCATCGCACAACACCTGGATTTCCACATGCCG 8566
Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGG-TTGCCGAA--CCAGGCGCCCGC 233
||| | | || |||| || | ||| | | ||||| |||||||| |||| || |||
Sbjct 8565 TGGATGGCCAAGAAACTTCTCGATGTACAGC-TCGGGATTGCCGAACGCCAGCCG--CGC 8509
Query 234 TTC 236
|||
Sbjct 8508 TTC 8506
>seq3060301
Length=1339
Score = 93.3 bits (102), Expect = 6e-17
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113
||||||||| |||||||||||||||| ||||| || || ||||| || | |||||| ||
Sbjct 294 CAGGCCCGGCGCCGGCGCTTCTTCCACGACCTTTTGATGGCGACGCTGAATCGAGCAGTC 353
Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTG 173
||| || |||| | |||||| || ||||| | || || | |||||| ||
Sbjct 354 GCGCTCATTGAGGTACAAACAGTGGCCGTGCTGGTCGGCAAAGACCTGGATTTCCACATG 413
Query 174 ACGTGGGTTGGTCAGGTACTTTTCCA 199
||| || ||| ||||||| || ||||
Sbjct 414 ACGCGGCTTGATCAGGTATTTCTCCA 439
>seq964614
Length=113
Score = 80.6 bits (88), Expect = 4e-13
Identities = 68/84 (81%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 67 GGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGG 126
||||||||||| | || |||||||| || || || | |||||| ||||| |||||||||
Sbjct 16 GGCGCTTCTTCGATGACTTTCTGGTGGCGGCGCTGGATCGAGCAGTCGCGTTCGCCCAGG 75
Query 127 TGGATGGCGTGGCCCTGGCCGTCG 150
| |||| |||||| |||| ||||
Sbjct 76 TAGATGAGGTGGCCGTGGCTGTCG 99
>seq325660
Length=919
Score = 80.6 bits (88), Expect = 4e-13
Identities = 68/84 (81%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 67 GGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGG 126
||||||||||| | || |||||||| || || || | |||||| ||||| |||||||||
Sbjct 179 GGCGCTTCTTCGATGACTTTCTGGTGGCGGCGCTGGATCGAGCAGTCGCGTTCGCCCAGG 238
Query 127 TGGATGGCGTGGCCCTGGCCGTCG 150
| |||| |||||| |||| ||||
Sbjct 239 TAGATGAGGTGGCCGTGGCTGTCG 262
>seq3011491
Length=738
Score = 77.0 bits (84), Expect = 5e-12
Identities = 90/122 (74%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 67 GGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGG 126
|| ||||| || | || |||||||| || || || | |||||||||||| |||||||||
Sbjct 166 GGGGCTTCCTCGATGACTTTCTGGTGGCGGCGCTGGATCGAGCAATCGCGTTCGCCCAGG 225
Query 127 TGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTC 186
| |||| ||||| |||| |||| | | ||| | ||| || || || |||| | ||
Sbjct 226 TAGATGAGCTGGCCGTGGCTGTCGCCGAACAGTTGAATTTCGACATGGCGCGGGTCGATC 285
Query 187 AG 188
||
Sbjct 286 AG 287
>seq3086750
Length=4236
Score = 73.4 bits (80), Expect = 6e-11
Identities = 97/135 (72%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 67 GGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGG 126
||||||||||| | || || || || || || || || ||||||||||| ||||||||
Sbjct 927 GGCGCTTCTTCGATGACTTTTTGATGGCGCCGCTGGAGGGAGCAATCGCGTTCGCCCAGA 986
Query 127 TGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTC 186
| || |||||| |||| |||| | | ||| | ||| ||||| ||||| | | ||
Sbjct 987 TAAATCAGGTGGCCGTGGCTGTCGCCGAACAGTTGGATTTCAACGTGGCGTGGATCGATC 1046
Query 187 AGGTACTTTTCCAGG 201
|| || ||| |||
Sbjct 1047 AGCGCCTGTTCGAGG 1061
>seq2381131
Length=148
Score = 73.4 bits (80), Expect = 6e-11
Identities = 51/57 (89%), Gaps = 1/57 (2%)
Strand=Plus/Plus
Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGG 57
|||||||||||||||||||||||||||| ||||| | |||||| |||||||||||
Sbjct 93 CGATGCACGCCTTGACGCAGCGAGCCAGTACTTCCTGGCGCGC-GGTTTCGTCCAGG 148
>seq127352
Length=3016
Score = 73.4 bits (80), Expect = 6e-11
Identities = 51/57 (89%), Gaps = 1/57 (2%)
Strand=Plus/Minus
Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGG 57
|||||||||||||||||||||||||||| ||||| | |||||| |||||||||||
Sbjct 56 CGATGCACGCCTTGACGCAGCGAGCCAGTACTTCCTGGCGCGC-GGTTTCGTCCAGG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 713978916570
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