Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq267913 381 8e-104 seq2779880 333 4e-89 seq2799663 293 3e-77 seq2948004 277 3e-72 seq2602258 161 1e-37 seq1993207 125 1e-26 seq1333795 114 2e-23 seq1934015 111 2e-22 seq3088496 102 1e-19 seq3060301 93.3 6e-17 seq964614 80.6 4e-13 seq325660 80.6 4e-13 seq3011491 77.0 5e-12 seq3086750 73.4 6e-11 seq2381131 73.4 6e-11 seq127352 73.4 6e-11 >seq267913 Length=352 Score = 381 bits (422), Expect = 8e-104 Identities = 242/261 (93%), Gaps = 1/261 (0%) Strand=Plus/Minus Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60 ||||||||||||||||||| || ||||| ||||| | ||| || ||| ||||||||||| Sbjct 311 CGATGCACGCCTTGACGCAACGCGCCAGCACTTCCTGGCGAGCGGTTT-CGTCCAGGCCC 253 Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 252 GGTGCCGGAGCTTCTTCCAGTACCTTTTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 193 Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 192 CCCAGGTGGATCGCGTGGCCCTGGCCGTCGGACAGTACCTGCACTTCCACGTGACGTGGG 133 Query 181 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAG 240 ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 132 TTGGTCAGGTATTTCTCCAGGTAGACCATCGGGTTGCCGAACCAGGCAGCCGCTTCGGAG 73 Query 241 CGAGTCTGCTTGGCCGCTTCG 261 || ||||||||||| |||||| Sbjct 72 CGGGTCTGCTTGGCGGCTTCG 52 >seq2779880 Length=225 Score = 333 bits (368), Expect = 4e-89 Identities = 206/219 (94%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60 |||||||||||||||||||||||||||| ||||| | |||||| ||| ||||||||||| Sbjct 218 CGATGCACGCCTTGACGCAGCGAGCCAGTACTTCCTGGCGCGCGGTTT-CGTCCAGGCCC 160 Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120 |||||||| |||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 159 GGTGCCGGAGCTTCTTCCAACACTTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 100 Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 99 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGAACCTGCACTTCCACGTGACGTGGG 40 Query 181 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCG 219 |||||||||||||| |||||||||||||||||||||||| Sbjct 39 TTGGTCAGGTACTTCTCCAGGTAGACCATCGGGTTGCCG 1 >seq2799663 Length=235 Score = 293 bits (324), Expect = 3e-77 Identities = 182/194 (94%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60 ||||||||||||||||||| |||||||| ||||| | |||||| ||| | |||||||| Sbjct 42 CGATGCACGCCTTGACGCAACGAGCCAGTACTTCCTGGCGCGCGGTTT-CATCCAGGCCG 100 Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 101 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGGCGCTGCAGCGAGCAATCGCGGTCG 160 Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 161 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACCTGCACTTCCACGTGACGTGGG 220 Query 181 TTGGTCAGGTACTT 194 |||||||||||||| Sbjct 221 TTGGTCAGGTACTT 234 >seq2948004 Length=439 Score = 277 bits (306), Expect = 3e-72 Identities = 172/183 (94%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60 |||||||||||||||||||||||||||||||||| | ||| || |||| ||||||| ||| Sbjct 258 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCCTGGCGGGCCTTTT-CGTCCAGACCC 316 Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120 ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 317 GGTGCCGGCGCTTCTTCGAGTACCTTCTGGTGGCGACGTTGCAGCGAGCAATCGCGGTCA 376 Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 377 CCCAGGTGGATCGCGTGGCCCTGGCCGTCGGACAGTACCTGCACTTCCACGTGACGTGGG 436 Query 181 TTG 183 ||| Sbjct 437 TTG 439 >seq2602258 Length=180 Score = 161 bits (178), Expect = 1e-37 Identities = 101/109 (93%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 153 CAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGG 212 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 CAGTACCTGCACTTCCACGTGACGTGGGTTGGTCAGGTACTTCTCCAGGTAGACCATCGG 60 Query 213 GTTGCCGAACCAGGCGCCCGCTTCGGAGCGAGTCTGCTTGGCCGCTTCG 261 ||| || |||||||||||||||||||| || ||||||||||| || ||| Sbjct 61 GTTACCAAACCAGGCGCCCGCTTCGGAACGGGTCTGCTTGGCGGCCTCG 109 >seq1993207 Length=127 Score = 125 bits (138), Expect = 1e-26 Identities = 77/82 (94%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 180 GTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGA 239 ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 127 GTTGGTCAGGTACTTCTCCAGGTAGACCATCGGGTTGCCGAACCAGGCAGCCGCTTCGGA 68 Query 240 GCGAGTCTGCTTGGCCGCTTCG 261 ||| ||||||||||| |||||| Sbjct 67 GCGCGTCTGCTTGGCAGCTTCG 46 >seq1333795 Length=121 Score = 114 bits (126), Expect = 2e-23 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 186 CAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAGCGAGT 245 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 121 CAGGTACTTCTCCAGGTAGACCATCGGGTTGCCGAACCAGGCAGCCGCTTCGGAGCGGGT 62 Query 246 CTGCTTGGCCGCTTCG 261 ||||||||| |||||| Sbjct 61 CTGCTTGGCAGCTTCG 46 >seq1934015 Length=127 Score = 111 bits (122), Expect = 2e-22 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 186 CAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAGCGAGT 245 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 1 CAGGTACTTCTCCAGGTAGACCATCGGGTTGCCGAACCAGGCAGCCGCTTCGGAGCGGGT 60 Query 246 CTGCTTGGCCGCTTCG 261 ||| ||||| |||||| Sbjct 61 CTGTTTGGCGGCTTCG 76 >seq3088496 Length=18757 Score = 102 bits (112), Expect = 1e-19 Identities = 135/183 (74%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 ||| || |||||||||||||| || || |||||||| || ||||||| || |||||||| Sbjct 8685 GCCTGGCGCCGGCGCTTCTTCGAGGACTTTCTGGTGTCGGCGTTGCAAGGAACAATCGCG 8626 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 | || || ||| |||||||| ||| | ||| ||| || || | |||||| || || Sbjct 8625 GCAACCGAGCCAGATCGCGTGGCCGTGGGCATCGCACAACACCTGGATTTCCACATGCCG 8566 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGG-TTGCCGAA--CCAGGCGCCCGC 233 ||| | | || |||| || | ||| | | ||||| |||||||| |||| || ||| Sbjct 8565 TGGATGGCCAAGAAACTTCTCGATGTACAGC-TCGGGATTGCCGAACGCCAGCCG--CGC 8509 Query 234 TTC 236 ||| Sbjct 8508 TTC 8506 >seq3060301 Length=1339 Score = 93.3 bits (102), Expect = 6e-17 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113 ||||||||| |||||||||||||||| ||||| || || ||||| || | |||||| || Sbjct 294 CAGGCCCGGCGCCGGCGCTTCTTCCACGACCTTTTGATGGCGACGCTGAATCGAGCAGTC 353 Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTG 173 ||| || |||| | |||||| || ||||| | || || | |||||| || Sbjct 354 GCGCTCATTGAGGTACAAACAGTGGCCGTGCTGGTCGGCAAAGACCTGGATTTCCACATG 413 Query 174 ACGTGGGTTGGTCAGGTACTTTTCCA 199 ||| || ||| ||||||| || |||| Sbjct 414 ACGCGGCTTGATCAGGTATTTCTCCA 439 >seq964614 Length=113 Score = 80.6 bits (88), Expect = 4e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 67 GGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGG 126 ||||||||||| | || |||||||| || || || | |||||| ||||| ||||||||| Sbjct 16 GGCGCTTCTTCGATGACTTTCTGGTGGCGGCGCTGGATCGAGCAGTCGCGTTCGCCCAGG 75 Query 127 TGGATGGCGTGGCCCTGGCCGTCG 150 | |||| |||||| |||| |||| Sbjct 76 TAGATGAGGTGGCCGTGGCTGTCG 99 >seq325660 Length=919 Score = 80.6 bits (88), Expect = 4e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 67 GGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGG 126 ||||||||||| | || |||||||| || || || | |||||| ||||| ||||||||| Sbjct 179 GGCGCTTCTTCGATGACTTTCTGGTGGCGGCGCTGGATCGAGCAGTCGCGTTCGCCCAGG 238 Query 127 TGGATGGCGTGGCCCTGGCCGTCG 150 | |||| |||||| |||| |||| Sbjct 239 TAGATGAGGTGGCCGTGGCTGTCG 262 >seq3011491 Length=738 Score = 77.0 bits (84), Expect = 5e-12 Identities = 90/122 (74%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 67 GGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGG 126 || ||||| || | || |||||||| || || || | |||||||||||| ||||||||| Sbjct 166 GGGGCTTCCTCGATGACTTTCTGGTGGCGGCGCTGGATCGAGCAATCGCGTTCGCCCAGG 225 Query 127 TGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTC 186 | |||| ||||| |||| |||| | | ||| | ||| || || || |||| | || Sbjct 226 TAGATGAGCTGGCCGTGGCTGTCGCCGAACAGTTGAATTTCGACATGGCGCGGGTCGATC 285 Query 187 AG 188 || Sbjct 286 AG 287 >seq3086750 Length=4236 Score = 73.4 bits (80), Expect = 6e-11 Identities = 97/135 (72%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 67 GGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGG 126 ||||||||||| | || || || || || || || || ||||||||||| |||||||| Sbjct 927 GGCGCTTCTTCGATGACTTTTTGATGGCGCCGCTGGAGGGAGCAATCGCGTTCGCCCAGA 986 Query 127 TGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTC 186 | || |||||| |||| |||| | | ||| | ||| ||||| ||||| | | || Sbjct 987 TAAATCAGGTGGCCGTGGCTGTCGCCGAACAGTTGGATTTCAACGTGGCGTGGATCGATC 1046 Query 187 AGGTACTTTTCCAGG 201 || || ||| ||| Sbjct 1047 AGCGCCTGTTCGAGG 1061 >seq2381131 Length=148 Score = 73.4 bits (80), Expect = 6e-11 Identities = 51/57 (89%), Gaps = 1/57 (2%) Strand=Plus/Plus Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGG 57 |||||||||||||||||||||||||||| ||||| | |||||| ||||||||||| Sbjct 93 CGATGCACGCCTTGACGCAGCGAGCCAGTACTTCCTGGCGCGC-GGTTTCGTCCAGG 148 >seq127352 Length=3016 Score = 73.4 bits (80), Expect = 6e-11 Identities = 51/57 (89%), Gaps = 1/57 (2%) Strand=Plus/Minus Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGG 57 |||||||||||||||||||||||||||| ||||| | |||||| ||||||||||| Sbjct 56 CGATGCACGCCTTGACGCAGCGAGCCAGTACTTCCTGGCGCGC-GGTTTCGTCCAGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713978916570