Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001187.1
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
seq263592 307 2e-81
seq3086160 284 2e-74
seq2463877 232 1e-58
seq2608988 228 1e-57
seq262894 215 7e-54
seq2763907 185 1e-44
seq2973365 138 2e-30
seq2898497 91.5 2e-16
>seq263592
Length=3984
Score = 307 bits (340), Expect = 2e-81
Identities = 225/260 (87%), Gaps = 1/260 (0%)
Strand=Plus/Plus
Query 2 GAGGCGCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGA 61
||||| || ||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 3357 GAGGCTCAGGCGATACAGGCGGCGCTTGAG-TTTGCCCAGGTACTGCATGCGCGCGACGA 3415
Query 62 TTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTTGA 121
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 3416 TTTCCTGGCCGGTGTAGCAGCCTTTTTTGAAGCTGACGCCGCCAACGGCCTGCAGGTTGA 3475
Query 122 GCATTTGCGGGATGAACAGCTCGCGGGTTTGCGCCATGACCTGGCCGATGCCGGCGCGGG 181
|||| |||||||| ||||| |||||||| |||| |||||||||||||||||||||||||
Sbjct 3476 GCATCTGCGGGATAAACAGTTCGCGGGTCTGCGGCATGACCTGGCCGATGCCGGCGCGGA 3535
Query 182 TCTGGCCCAGCAGCCATTCGTTCAGACCTGCTTCTTTAAGCTGTGCAGTCAATTGGCTGC 241
||||||| |||||||| || |||| | |||| || || || | |||||| ||
Sbjct 3536 TCTGGCCGAGCAGCCAGTCATTCACCTCAGCTTGTTGCAGTTGGCTGGCCAATTGCTGGC 3595
Query 242 GTACGGCCTCGGCCTGTTCG 261
|||| || ||||| ||||||
Sbjct 3596 GTACCGCTTCGGCGTGTTCG 3615
>seq3086160
Length=3770
Score = 284 bits (314), Expect = 2e-74
Identities = 219/259 (85%), Gaps = 1/259 (0%)
Strand=Plus/Minus
Query 3 AGGCGCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGAT 62
|||| || |||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 503 AGGCTCAGGCGGTACAGGCGGCGTTTGAG-TTTGCCCAGGTACTGCATGCGCGCGACGAT 445
Query 63 TTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTTGAG 122
|||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||| |||||
Sbjct 444 TTCCTGGCCGGTGTAGCAACCTTTCTTGAAGCTGACCCCGCCCACGGCTTGCAGATTGAG 385
Query 123 CATTTGCGGGATGAACAGCTCGCGGGTTTGCGCCATGACCTGGCCGATGCCGGCGCGGGT 182
||| |||||||||||||| |||||||| |||| ||| || ||||||||||||||||| |
Sbjct 384 CATCTGCGGGATGAACAGTTCGCGGGTCTGCGGCATCACTTGGCCGATGCCGGCGCGAAT 325
Query 183 CTGGCCCAGCAGCCATTCGTTCAGACCTGCTTCTTTAAGCTGTGCAGTCAATTGGCTGCG 242
|||||||||||||||||| ||||| | |||| || ||| | || |||||||||
Sbjct 324 CTGGCCCAGCAGCCATTCATTCAGTTCGGCTTGCGGCAGGGTTGCGGCCAGTTGGCTGCG 265
Query 243 TACGGCCTCGGCCTGTTCG 261
| | ||||| || |||
Sbjct 264 CAGGCTCTCGGTGTGCTCG 246
>seq2463877
Length=162
Score = 232 bits (256), Expect = 1e-58
Identities = 150/163 (92%), Gaps = 1/163 (1%)
Strand=Plus/Minus
Query 2 GAGGCGCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGA 61
||||| || ||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 162 GAGGCTCAGGCGATACAGGCGGCGCTTGAG-TTTGCCCAGGTACTGCATGCGCGCGACGA 104
Query 62 TTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTTGA 121
||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 103 TTTCCTGGCCGGTATAGCAGCCTTTTTTGAAGCTGACGCCGCCAACGGCCTGCAGGTTGA 44
Query 122 GCATTTGCGGGATGAACAGCTCGCGGGTTTGCGCCATGACCTG 164
|||| |||||||| ||||| |||||||| |||| |||||||||
Sbjct 43 GCATCTGCGGGATAAACAGTTCGCGGGTCTGCGGCATGACCTG 1
>seq2608988
Length=181
Score = 228 bits (252), Expect = 1e-57
Identities = 140/149 (94%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 57 GACGATTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAG 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GACGATTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAG 60
Query 117 GTTGAGCATTTGCGGGATGAACAGCTCGCGGGTTTGCGCCATGACCTGGCCGATGCCGGC 176
||||||||| |||||||| ||||| |||||||| || | |||||||||||||||||||||
Sbjct 61 GTTGAGCATCTGCGGGATAAACAGTTCGCGGGTCTGGGGCATGACCTGGCCGATGCCGGC 120
Query 177 GCGGGTCTGGCCCAGCAGCCATTCGTTCA 205
|||| |||||||||||||||||| ||||
Sbjct 121 GCGGATCTGGCCCAGCAGCCATTGATTCA 149
>seq262894
Length=689
Score = 215 bits (238), Expect = 7e-54
Identities = 137/149 (92%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 57 GACGATTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAG 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GACGATTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAG 60
Query 117 GTTGAGCATTTGCGGGATGAACAGCTCGCGGGTTTGCGCCATGACCTGGCCGATGCCGGC 176
||| ||||| |||||||| ||||| |||||||| || | |||||| ||||||||||| ||
Sbjct 61 GTTAAGCATCTGCGGGATAAACAGTTCGCGGGTCTGGGGCATGACTTGGCCGATGCCAGC 120
Query 177 GCGGGTCTGGCCCAGCAGCCATTCGTTCA 205
|||| |||||||||||||||||| ||||
Sbjct 121 GCGGATCTGGCCCAGCAGCCATTGATTCA 149
>seq2763907
Length=218
Score = 185 bits (204), Expect = 1e-44
Identities = 112/117 (96%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 3 AGGCGCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGAT 62
|||| || ||| ||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 116 AGGCTCAGGCGATACAGGCGACGCTTGAG-TTTGCCCAGGTATTGCATGCGCGCGACGAT 58
Query 63 TTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTT 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 TTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTT 1
>seq2973365
Length=529
Score = 138 bits (152), Expect = 2e-30
Identities = 93/104 (89%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 102 GCCGACGGCCTGCAGGTTGAGCATTTGCGGGATGAACAGCTCGCGGGTTTGCGCCATGAC 161
||| |||||||||||||||||||| |||||||| ||||| |||||||| |||| ||||||
Sbjct 1 GCCAACGGCCTGCAGGTTGAGCATCTGCGGGATAAACAGTTCGCGGGTCTGCGGCATGAC 60
Query 162 CTGGCCGATGCCGGCGCGGGTCTGGCCCAGCAGCCATTCGTTCA 205
||| ||||||||||||||| |||||||||||||||| | ||||
Sbjct 61 CTGCCCGATGCCGGCGCGGATCTGGCCCAGCAGCCAGGCATTCA 104
>seq2898497
Length=329
Score = 91.5 bits (100), Expect = 2e-16
Identities = 60/65 (92%), Gaps = 1/65 (2%)
Strand=Plus/Minus
Query 1 CGAGGCGCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACG 60
|||||| || ||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 64 CGAGGCTCAGGCGATACAGGCGGCGCTTGAG-TTTGCCCAGGTACTGCATGCGCGCGACG 6
Query 61 ATTTC 65
|||||
Sbjct 5 ATTTC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 713978916570
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