Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001187.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq263592 307 2e-81 seq3086160 284 2e-74 seq2463877 232 1e-58 seq2608988 228 1e-57 seq262894 215 7e-54 seq2763907 185 1e-44 seq2973365 138 2e-30 seq2898497 91.5 2e-16 >seq263592 Length=3984 Score = 307 bits (340), Expect = 2e-81 Identities = 225/260 (87%), Gaps = 1/260 (0%) Strand=Plus/Plus Query 2 GAGGCGCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGA 61 ||||| || ||| |||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 3357 GAGGCTCAGGCGATACAGGCGGCGCTTGAG-TTTGCCCAGGTACTGCATGCGCGCGACGA 3415 Query 62 TTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTTGA 121 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 3416 TTTCCTGGCCGGTGTAGCAGCCTTTTTTGAAGCTGACGCCGCCAACGGCCTGCAGGTTGA 3475 Query 122 GCATTTGCGGGATGAACAGCTCGCGGGTTTGCGCCATGACCTGGCCGATGCCGGCGCGGG 181 |||| |||||||| ||||| |||||||| |||| ||||||||||||||||||||||||| Sbjct 3476 GCATCTGCGGGATAAACAGTTCGCGGGTCTGCGGCATGACCTGGCCGATGCCGGCGCGGA 3535 Query 182 TCTGGCCCAGCAGCCATTCGTTCAGACCTGCTTCTTTAAGCTGTGCAGTCAATTGGCTGC 241 ||||||| |||||||| || |||| | |||| || || || | |||||| || Sbjct 3536 TCTGGCCGAGCAGCCAGTCATTCACCTCAGCTTGTTGCAGTTGGCTGGCCAATTGCTGGC 3595 Query 242 GTACGGCCTCGGCCTGTTCG 261 |||| || ||||| |||||| Sbjct 3596 GTACCGCTTCGGCGTGTTCG 3615 >seq3086160 Length=3770 Score = 284 bits (314), Expect = 2e-74 Identities = 219/259 (85%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 3 AGGCGCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGAT 62 |||| || |||||||||||| || ||||| |||||||||||||||||||||||||||||| Sbjct 503 AGGCTCAGGCGGTACAGGCGGCGTTTGAG-TTTGCCCAGGTACTGCATGCGCGCGACGAT 445 Query 63 TTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTTGAG 122 |||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct 444 TTCCTGGCCGGTGTAGCAACCTTTCTTGAAGCTGACCCCGCCCACGGCTTGCAGATTGAG 385 Query 123 CATTTGCGGGATGAACAGCTCGCGGGTTTGCGCCATGACCTGGCCGATGCCGGCGCGGGT 182 ||| |||||||||||||| |||||||| |||| ||| || ||||||||||||||||| | Sbjct 384 CATCTGCGGGATGAACAGTTCGCGGGTCTGCGGCATCACTTGGCCGATGCCGGCGCGAAT 325 Query 183 CTGGCCCAGCAGCCATTCGTTCAGACCTGCTTCTTTAAGCTGTGCAGTCAATTGGCTGCG 242 |||||||||||||||||| ||||| | |||| || ||| | || ||||||||| Sbjct 324 CTGGCCCAGCAGCCATTCATTCAGTTCGGCTTGCGGCAGGGTTGCGGCCAGTTGGCTGCG 265 Query 243 TACGGCCTCGGCCTGTTCG 261 | | ||||| || ||| Sbjct 264 CAGGCTCTCGGTGTGCTCG 246 >seq2463877 Length=162 Score = 232 bits (256), Expect = 1e-58 Identities = 150/163 (92%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 2 GAGGCGCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGA 61 ||||| || ||| |||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 162 GAGGCTCAGGCGATACAGGCGGCGCTTGAG-TTTGCCCAGGTACTGCATGCGCGCGACGA 104 Query 62 TTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTTGA 121 ||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 103 TTTCCTGGCCGGTATAGCAGCCTTTTTTGAAGCTGACGCCGCCAACGGCCTGCAGGTTGA 44 Query 122 GCATTTGCGGGATGAACAGCTCGCGGGTTTGCGCCATGACCTG 164 |||| |||||||| ||||| |||||||| |||| ||||||||| Sbjct 43 GCATCTGCGGGATAAACAGTTCGCGGGTCTGCGGCATGACCTG 1 >seq2608988 Length=181 Score = 228 bits (252), Expect = 1e-57 Identities = 140/149 (94%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 57 GACGATTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAG 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GACGATTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAG 60 Query 117 GTTGAGCATTTGCGGGATGAACAGCTCGCGGGTTTGCGCCATGACCTGGCCGATGCCGGC 176 ||||||||| |||||||| ||||| |||||||| || | ||||||||||||||||||||| Sbjct 61 GTTGAGCATCTGCGGGATAAACAGTTCGCGGGTCTGGGGCATGACCTGGCCGATGCCGGC 120 Query 177 GCGGGTCTGGCCCAGCAGCCATTCGTTCA 205 |||| |||||||||||||||||| |||| Sbjct 121 GCGGATCTGGCCCAGCAGCCATTGATTCA 149 >seq262894 Length=689 Score = 215 bits (238), Expect = 7e-54 Identities = 137/149 (92%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 57 GACGATTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAG 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GACGATTTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAG 60 Query 117 GTTGAGCATTTGCGGGATGAACAGCTCGCGGGTTTGCGCCATGACCTGGCCGATGCCGGC 176 ||| ||||| |||||||| ||||| |||||||| || | |||||| ||||||||||| || Sbjct 61 GTTAAGCATCTGCGGGATAAACAGTTCGCGGGTCTGGGGCATGACTTGGCCGATGCCAGC 120 Query 177 GCGGGTCTGGCCCAGCAGCCATTCGTTCA 205 |||| |||||||||||||||||| |||| Sbjct 121 GCGGATCTGGCCCAGCAGCCATTGATTCA 149 >seq2763907 Length=218 Score = 185 bits (204), Expect = 1e-44 Identities = 112/117 (96%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 3 AGGCGCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACGAT 62 |||| || ||| ||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 116 AGGCTCAGGCGATACAGGCGACGCTTGAG-TTTGCCCAGGTATTGCATGCGCGCGACGAT 58 Query 63 TTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTT 119 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 57 TTCCTGGCCGGTGTAGCAGCCTTTCTTGAAGCTGACGCCGCCGACGGCCTGCAGGTT 1 >seq2973365 Length=529 Score = 138 bits (152), Expect = 2e-30 Identities = 93/104 (89%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 102 GCCGACGGCCTGCAGGTTGAGCATTTGCGGGATGAACAGCTCGCGGGTTTGCGCCATGAC 161 ||| |||||||||||||||||||| |||||||| ||||| |||||||| |||| |||||| Sbjct 1 GCCAACGGCCTGCAGGTTGAGCATCTGCGGGATAAACAGTTCGCGGGTCTGCGGCATGAC 60 Query 162 CTGGCCGATGCCGGCGCGGGTCTGGCCCAGCAGCCATTCGTTCA 205 ||| ||||||||||||||| |||||||||||||||| | |||| Sbjct 61 CTGCCCGATGCCGGCGCGGATCTGGCCCAGCAGCCAGGCATTCA 104 >seq2898497 Length=329 Score = 91.5 bits (100), Expect = 2e-16 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 1 CGAGGCGCAAGCGGTACAGGCGACGCTTGAGCTTTGCCCAGGTACTGCATGCGCGCGACG 60 |||||| || ||| |||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 64 CGAGGCTCAGGCGATACAGGCGGCGCTTGAG-TTTGCCCAGGTACTGCATGCGCGCGACG 6 Query 61 ATTTC 65 ||||| Sbjct 5 ATTTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713978916570