Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001197.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq246135 259 7e-67 seq2932919 196 7e-48 seq2956112 143 4e-32 seq2888111 140 5e-31 seq89293 136 6e-30 seq2286867 127 3e-27 seq2458499 120 5e-25 seq1161920 120 5e-25 seq2061642 116 6e-24 seq1659634 116 6e-24 seq1161321 107 3e-21 seq3015306 77.0 5e-12 >seq246135 Length=5554 Score = 259 bits (286), Expect = 7e-67 Identities = 225/275 (82%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 3 GAATGAGCCCGGCGGCTTGCGCCAGTTCGCCACAGGCCACGCTCGGTGGCTTTCTTGCGC 62 || ||||||| ||||| |||| || |||||||||| ||||||||||| | || |||| Sbjct 3660 GAGTGAGCCCAGCGGCGACGGCCAATT-GCCACAGGCCGCGCTCGGTGGCCTCCT-GCGC 3603 Query 63 CAGGCTGACGTGGGCAAATCCGCAAAGGGCGAGGGCGCGTTGATAGCGGGCGCAAAG--T 120 ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| || | Sbjct 3602 GAGGCTGACGTGGGCAAAGCCGCAGAGGGCGAGGGCGCGTTGGTAGCGGGCGCAGAGGTT 3543 Query 121 GCAGCAGCGCCGACCAGGATGATCGGCTGATGTTTGGCCGAATCTGGCAAGCCGGCGAGC 180 || ||||||||||||| | ||| |||| ||||||||| | ||||| |||||||| Sbjct 3542 GC--CAGCGCCGACCAGAACGATAGGCTTGTGTTTGGCCTGCTGCGGCAAACCGGCGAGT 3485 Query 181 TCATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTGCTGGTCGGGCGCCAGCTGCGCG 240 || |||||||| |||||||| ||||| |||||||| || | |||||| ||||| | || Sbjct 3484 TCGTGGCCGATCAGCAGGCCGGACAGATAATCGGGCTGTTCGTCGGGTGCCAGTTCGCCG 3425 Query 241 GTCAGCCCAAGGGTACGGGCACTGAACAGGGTCGA 275 |||| ||| |||||||| || ||||||| |||||| Sbjct 3424 GTCAACCCCAGGGTACGAGCGCTGAACAAGGTCGA 3390 >seq2932919 Length=398 Score = 196 bits (216), Expect = 7e-48 Identities = 180/225 (80%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 3 GAATGAGCCCGGCGGCTTGCGCCAGTTCGCCACAGGCCACGCTCGGTGGCTTTCTTGCGC 62 || ||||||| ||||| |||| | ||||||| || ||| ||||||||| || | || Sbjct 224 GAGTGAGCCCAGCGGCGACGGCCAACT-GCCACAGACCGCGCGCGGTGGCTTCCTGG-GC 167 Query 63 CAGGCTGACGTGGGCAAATCCGCAAAGGGCGAGGGCGCGTTGATAGCGGGCGCAAAGTGC 122 ||||||||||||| ||| |||| ||||||||||||||||| |||| |||||| ||| Sbjct 166 GAGGCTGACGTGGGTAAAGCCGCTGAGGGCGAGGGCGCGTTGGTAGCAGGCGCAGAGTTT 107 Query 123 AGCAGCGCCGACCAGGATGATCGGCTGATGTTTGGCCGAATCTGGCAAGCCGGCGAGCTC 182 |||||||||||||| | ||| ||| ||||||||| | |||||| |||||||| || Sbjct 106 GGCAGCGCCGACCAGAACGATAGGCGTGTGTTTGGCCTGCTGTGGCAAACCGGCGAGTTC 47 Query 183 ATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTGCTGGTCGGG 227 |||||||| |||||||| ||||| |||||||| || | |||||| Sbjct 46 GTGGCCGATCAGCAGGCCGGACAGATAATCGGGCTGTTCGTCGGG 2 >seq2956112 Length=465 Score = 143 bits (158), Expect = 4e-32 Identities = 127/156 (81%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 3 GAATGAGCCCGGCGGCTTGCGCCAGTTCGCCACAGGCCACGCTCGGTGGCTTTCTTGCGC 62 || |||||||||| || |||| || |||||||||| || |||||||| ||||||| Sbjct 157 GAGTGAGCCCGGCCGCCACGGCCAATT-GCCACAGGCCGCGTTCGGTGGCCG-CTTGCGC 100 Query 63 CAGGCTGACGTGGGCAAATCCGCAAAGGGCGAGGGCGCGTTGATAGCGGGCGCAAAGTGC 122 ||||||||||||||| || ||||| |||||||||||||| || || |||||||| || || Sbjct 99 CAGGCTGACGTGGGCGAAGCCGCAGAGGGCGAGGGCGCGCTGGTAACGGGCGCAGAGCGC 40 Query 123 AGCAGCGCCGACCAGGATGATCGGCTGATGTTTGGC 158 || | ||||||||||| ||| |||| ||||| || Sbjct 39 TGCGGTGCCGACCAGGACGATGGGCTTGTGTTTTGC 4 >seq2888111 Length=313 Score = 140 bits (154), Expect = 5e-31 Identities = 120/146 (82%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 3 GAATGAGCCCGGCGGCTTGCGCCAGTTCGCCACAGGCCACGCTCGGTGGCTTTCTTGCGC 62 || |||||||||| || ||||||| |||||| || |||||| ||||| || |||| Sbjct 148 GAGTGAGCCCGGCCGCCACGGCCAGTT-GCCACAAACCGCGCTCGCTGGCTGCCT-GCGC 91 Query 63 CAGGCTGACGTGGGCAAATCCGCAAAGGGCGAGGGCGCGTTGATAGCGGGCGCAAAGTGC 122 ||||||||||| ||| || |||||||| |||||||| ||||||||||||||||| || | Sbjct 90 CAGGCTGACGTCGGCGAAGCCGCAAAGCGCGAGGGCACGTTGATAGCGGGCGCAGAGGGG 31 Query 123 AGCAGCGCCGACCAGGATGATCGGCT 148 || || |||||||||| |||||||| Sbjct 30 GGCGGCACCGACCAGGACGATCGGCT 5 >seq89293 Length=767 Score = 136 bits (150), Expect = 6e-30 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 99 GCGTTGATAGCGGGCGCAAAGTGCAGCAGCGCCGACCAGGATGATCGGCTGATGTTTGGC 158 ||| || || |||||||| || || || | ||||||||||| ||| |||| ||||| || Sbjct 1 GCGCTGGTAACGGGCGCAGAGCGCTGCGGTGCCGACCAGGACGATGGGCTTGTGTTTTGC 60 Query 159 CGAATCTGGCAAGCCGGCGAGCTCATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTG 218 | | |||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||| Sbjct 61 AGGGGCCGGCAAGCCGGCGAGTTCATGCCCGATCAGCAGGCCGGACAGGTAATCCGGTTG 120 Query 219 CTGGTCGGGCGCCAG 233 ||||||||| ||||| Sbjct 121 CTGGTCGGGAGCCAG 135 >seq2286867 Length=136 Score = 127 bits (140), Expect = 3e-27 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 99 GCGTTGATAGCGGGCGCAAAGTGCAGCAGCGCCGACCAGGATGATCGGCTGATGTTTGGC 158 ||| || || |||||||| || || || | ||||||||||| ||| |||| ||||| || Sbjct 1 GCGCTGGTAACGGGCGCAGAGCGCTGCGGTGCCGACCAGGACGATGGGCTTGTGTTTTGC 60 Query 159 CGAATCTGGCAAGCCGGCGAGCTCATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTG 218 | | || || |||||||| ||||| ||||| |||||||| ||||||||||| ||||| Sbjct 61 AGGTGCCGGTAAACCGGCGAGTTCATGCCCGATCAGCAGGCCGGACAGGTAATCCGGTTG 120 Query 219 CTGGTCGGGCGCCAG 233 ||||||||| ||||| Sbjct 121 CTGGTCGGGAGCCAG 135 >seq2458499 Length=161 Score = 120 bits (132), Expect = 5e-25 Identities = 89/104 (86%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 172 CCGGCGAGCTCATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTGCTGGTCGGGCGCC 231 |||||||| ||||| ||||| |||||||| ||||||||||| |||||||||||||| ||| Sbjct 161 CCGGCGAGTTCATGCCCGATCAGCAGGCCGGACAGGTAATCCGGTTGCTGGTCGGGAGCC 102 Query 232 AGCTGCGCGGTCAGCCCAAGGGTACGGGCACTGAACAGGGTCGA 275 || | ||||||||||| || || ||||| ||||||| ||||| Sbjct 101 AGTTCGGCGGTCAGCCCGAGTGTGCGGGCGCTGAACAATGTCGA 58 >seq1161920 Length=118 Score = 120 bits (132), Expect = 5e-25 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 163 TCTGGCAAGCCGGCGAGCTCATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTGCTGG 222 || || || |||||||| ||||| ||||| |||||||| |||||||| ||||| ||||| Sbjct 10 TCGGGTAAACCGGCGAGTTCATGACCGATCAGCAGGCCGGACAGGTAGTCGGGCTGCTGC 69 Query 223 TCGGGCGCCAGCTGCGCGGTCAGCCCAAGGGTACGGGCACTGAACAGGG 271 || |||| ||| || |||||||| || ||||| |||||||||||||||| Sbjct 70 TCAGGCGTCAGTTGGGCGGTCAGGCCGAGGGTGCGGGCACTGAACAGGG 118 >seq2061642 Length=127 Score = 116 bits (128), Expect = 6e-24 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 163 TCTGGCAAGCCGGCGAGCTCATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTGCTGG 222 || || || |||||||| ||||| ||||| |||||||| |||||| | ||||| ||||| Sbjct 19 TCGGGTAAACCGGCGAGTTCATGACCGATCAGCAGGCCGGACAGGGAGTCGGGCTGCTGC 78 Query 223 TCGGGCGCCAGCTGCGCGGTCAGCCCAAGGGTACGGGCACTGAACAGGG 271 || |||| ||| || |||||||| || ||||| |||||||||||||||| Sbjct 79 TCAGGCGTCAGTTGGGCGGTCAGGCCGAGGGTGCGGGCACTGAACAGGG 127 >seq1659634 Length=127 Score = 116 bits (128), Expect = 6e-24 Identities = 104/127 (82%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 91 GCGAGGGCGCGTTGATAGCGGGCGCAAAGTGCAGCAGCGCCGACCAGGATGATCGGC-TG 149 |||||||| ||||||||||||||||| || | || || |||||||||| ||||||| || Sbjct 126 GCGAGGGCACGTTGATAGCGGGCGCAGAGGGGGGCGGCACCGACCAGGACGATCGGCTTG 67 Query 150 ATGTTTG-GCCGAATCTGGCAAGCCGGCGAGCTCATGGCCGATGAGCAGGCCAGACAGGT 208 ||||| || | || || || |||||||| ||||| ||||| |||||||| ||||||| Sbjct 66 GGGTTTGCGCTG--TCGGGTAAACCGGCGAGTTCATGACCGATCAGCAGGCCGGACAGGT 9 Query 209 AATCGGG 215 | ||||| Sbjct 8 AGTCGGG 2 >seq1161321 Length=118 Score = 107 bits (118), Expect = 3e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 91 GCGAGGGCGCGTTGATAGCGGGCGCAAAGTGCAGCAGCGCCGACCAGGATGATCGGCTGA 150 |||||||| ||||||||||||||||| || | || || |||||||||| |||||||| Sbjct 2 GCGAGGGCACGTTGATAGCGGGCGCAGAGGGGGGCGGCACCGACCAGGACGATCGGCTTG 61 Query 151 TGTTTGGCCGAATCTGGCAAGCCGGCGAGCTCATGGCCGATGAGCAGGCCAGACAGG 207 |||| || || || || |||||||| ||||| ||||| |||||||| |||||| Sbjct 62 GGTTTTGCGCTGTCGGGTAAACCGGCGAGTTCATGACCGATCAGCAGGCCGGACAGG 118 >seq3015306 Length=767 Score = 77.0 bits (84), Expect = 5e-12 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 211 TCGGGTTGCTGGTCGGGCGCCAGCTGCGCGGTCAGCCCAAGGGTACGGGCACTGAACAGG 270 ||||| ||||| || |||| ||| || |||||||| || ||||| ||||||||||||||| Sbjct 3 TCGGGCTGCTGCTCAGGCGTCAGTTGGGCGGTCAGGCCGAGGGTGCGGGCACTGAACAGG 62 Query 271 GTCGA 275 ||||| Sbjct 63 GTCGA 67 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 757438502796