Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001197.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq246135 259 7e-67
seq2932919 196 7e-48
seq2956112 143 4e-32
seq2888111 140 5e-31
seq89293 136 6e-30
seq2286867 127 3e-27
seq2458499 120 5e-25
seq1161920 120 5e-25
seq2061642 116 6e-24
seq1659634 116 6e-24
seq1161321 107 3e-21
seq3015306 77.0 5e-12
>seq246135
Length=5554
Score = 259 bits (286), Expect = 7e-67
Identities = 225/275 (82%), Gaps = 6/275 (2%)
Strand=Plus/Minus
Query 3 GAATGAGCCCGGCGGCTTGCGCCAGTTCGCCACAGGCCACGCTCGGTGGCTTTCTTGCGC 62
|| ||||||| ||||| |||| || |||||||||| ||||||||||| | || ||||
Sbjct 3660 GAGTGAGCCCAGCGGCGACGGCCAATT-GCCACAGGCCGCGCTCGGTGGCCTCCT-GCGC 3603
Query 63 CAGGCTGACGTGGGCAAATCCGCAAAGGGCGAGGGCGCGTTGATAGCGGGCGCAAAG--T 120
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| || |
Sbjct 3602 GAGGCTGACGTGGGCAAAGCCGCAGAGGGCGAGGGCGCGTTGGTAGCGGGCGCAGAGGTT 3543
Query 121 GCAGCAGCGCCGACCAGGATGATCGGCTGATGTTTGGCCGAATCTGGCAAGCCGGCGAGC 180
|| ||||||||||||| | ||| |||| ||||||||| | ||||| ||||||||
Sbjct 3542 GC--CAGCGCCGACCAGAACGATAGGCTTGTGTTTGGCCTGCTGCGGCAAACCGGCGAGT 3485
Query 181 TCATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTGCTGGTCGGGCGCCAGCTGCGCG 240
|| |||||||| |||||||| ||||| |||||||| || | |||||| ||||| | ||
Sbjct 3484 TCGTGGCCGATCAGCAGGCCGGACAGATAATCGGGCTGTTCGTCGGGTGCCAGTTCGCCG 3425
Query 241 GTCAGCCCAAGGGTACGGGCACTGAACAGGGTCGA 275
|||| ||| |||||||| || ||||||| ||||||
Sbjct 3424 GTCAACCCCAGGGTACGAGCGCTGAACAAGGTCGA 3390
>seq2932919
Length=398
Score = 196 bits (216), Expect = 7e-48
Identities = 180/225 (80%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 3 GAATGAGCCCGGCGGCTTGCGCCAGTTCGCCACAGGCCACGCTCGGTGGCTTTCTTGCGC 62
|| ||||||| ||||| |||| | ||||||| || ||| ||||||||| || | ||
Sbjct 224 GAGTGAGCCCAGCGGCGACGGCCAACT-GCCACAGACCGCGCGCGGTGGCTTCCTGG-GC 167
Query 63 CAGGCTGACGTGGGCAAATCCGCAAAGGGCGAGGGCGCGTTGATAGCGGGCGCAAAGTGC 122
||||||||||||| ||| |||| ||||||||||||||||| |||| |||||| |||
Sbjct 166 GAGGCTGACGTGGGTAAAGCCGCTGAGGGCGAGGGCGCGTTGGTAGCAGGCGCAGAGTTT 107
Query 123 AGCAGCGCCGACCAGGATGATCGGCTGATGTTTGGCCGAATCTGGCAAGCCGGCGAGCTC 182
|||||||||||||| | ||| ||| ||||||||| | |||||| |||||||| ||
Sbjct 106 GGCAGCGCCGACCAGAACGATAGGCGTGTGTTTGGCCTGCTGTGGCAAACCGGCGAGTTC 47
Query 183 ATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTGCTGGTCGGG 227
|||||||| |||||||| ||||| |||||||| || | ||||||
Sbjct 46 GTGGCCGATCAGCAGGCCGGACAGATAATCGGGCTGTTCGTCGGG 2
>seq2956112
Length=465
Score = 143 bits (158), Expect = 4e-32
Identities = 127/156 (81%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 3 GAATGAGCCCGGCGGCTTGCGCCAGTTCGCCACAGGCCACGCTCGGTGGCTTTCTTGCGC 62
|| |||||||||| || |||| || |||||||||| || |||||||| |||||||
Sbjct 157 GAGTGAGCCCGGCCGCCACGGCCAATT-GCCACAGGCCGCGTTCGGTGGCCG-CTTGCGC 100
Query 63 CAGGCTGACGTGGGCAAATCCGCAAAGGGCGAGGGCGCGTTGATAGCGGGCGCAAAGTGC 122
||||||||||||||| || ||||| |||||||||||||| || || |||||||| || ||
Sbjct 99 CAGGCTGACGTGGGCGAAGCCGCAGAGGGCGAGGGCGCGCTGGTAACGGGCGCAGAGCGC 40
Query 123 AGCAGCGCCGACCAGGATGATCGGCTGATGTTTGGC 158
|| | ||||||||||| ||| |||| ||||| ||
Sbjct 39 TGCGGTGCCGACCAGGACGATGGGCTTGTGTTTTGC 4
>seq2888111
Length=313
Score = 140 bits (154), Expect = 5e-31
Identities = 120/146 (82%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 3 GAATGAGCCCGGCGGCTTGCGCCAGTTCGCCACAGGCCACGCTCGGTGGCTTTCTTGCGC 62
|| |||||||||| || ||||||| |||||| || |||||| ||||| || ||||
Sbjct 148 GAGTGAGCCCGGCCGCCACGGCCAGTT-GCCACAAACCGCGCTCGCTGGCTGCCT-GCGC 91
Query 63 CAGGCTGACGTGGGCAAATCCGCAAAGGGCGAGGGCGCGTTGATAGCGGGCGCAAAGTGC 122
||||||||||| ||| || |||||||| |||||||| ||||||||||||||||| || |
Sbjct 90 CAGGCTGACGTCGGCGAAGCCGCAAAGCGCGAGGGCACGTTGATAGCGGGCGCAGAGGGG 31
Query 123 AGCAGCGCCGACCAGGATGATCGGCT 148
|| || |||||||||| ||||||||
Sbjct 30 GGCGGCACCGACCAGGACGATCGGCT 5
>seq89293
Length=767
Score = 136 bits (150), Expect = 6e-30
Identities = 111/135 (82%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 99 GCGTTGATAGCGGGCGCAAAGTGCAGCAGCGCCGACCAGGATGATCGGCTGATGTTTGGC 158
||| || || |||||||| || || || | ||||||||||| ||| |||| ||||| ||
Sbjct 1 GCGCTGGTAACGGGCGCAGAGCGCTGCGGTGCCGACCAGGACGATGGGCTTGTGTTTTGC 60
Query 159 CGAATCTGGCAAGCCGGCGAGCTCATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTG 218
| | |||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||
Sbjct 61 AGGGGCCGGCAAGCCGGCGAGTTCATGCCCGATCAGCAGGCCGGACAGGTAATCCGGTTG 120
Query 219 CTGGTCGGGCGCCAG 233
||||||||| |||||
Sbjct 121 CTGGTCGGGAGCCAG 135
>seq2286867
Length=136
Score = 127 bits (140), Expect = 3e-27
Identities = 109/135 (81%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 99 GCGTTGATAGCGGGCGCAAAGTGCAGCAGCGCCGACCAGGATGATCGGCTGATGTTTGGC 158
||| || || |||||||| || || || | ||||||||||| ||| |||| ||||| ||
Sbjct 1 GCGCTGGTAACGGGCGCAGAGCGCTGCGGTGCCGACCAGGACGATGGGCTTGTGTTTTGC 60
Query 159 CGAATCTGGCAAGCCGGCGAGCTCATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTG 218
| | || || |||||||| ||||| ||||| |||||||| ||||||||||| |||||
Sbjct 61 AGGTGCCGGTAAACCGGCGAGTTCATGCCCGATCAGCAGGCCGGACAGGTAATCCGGTTG 120
Query 219 CTGGTCGGGCGCCAG 233
||||||||| |||||
Sbjct 121 CTGGTCGGGAGCCAG 135
>seq2458499
Length=161
Score = 120 bits (132), Expect = 5e-25
Identities = 89/104 (86%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 172 CCGGCGAGCTCATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTGCTGGTCGGGCGCC 231
|||||||| ||||| ||||| |||||||| ||||||||||| |||||||||||||| |||
Sbjct 161 CCGGCGAGTTCATGCCCGATCAGCAGGCCGGACAGGTAATCCGGTTGCTGGTCGGGAGCC 102
Query 232 AGCTGCGCGGTCAGCCCAAGGGTACGGGCACTGAACAGGGTCGA 275
|| | ||||||||||| || || ||||| ||||||| |||||
Sbjct 101 AGTTCGGCGGTCAGCCCGAGTGTGCGGGCGCTGAACAATGTCGA 58
>seq1161920
Length=118
Score = 120 bits (132), Expect = 5e-25
Identities = 92/109 (84%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 163 TCTGGCAAGCCGGCGAGCTCATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTGCTGG 222
|| || || |||||||| ||||| ||||| |||||||| |||||||| ||||| |||||
Sbjct 10 TCGGGTAAACCGGCGAGTTCATGACCGATCAGCAGGCCGGACAGGTAGTCGGGCTGCTGC 69
Query 223 TCGGGCGCCAGCTGCGCGGTCAGCCCAAGGGTACGGGCACTGAACAGGG 271
|| |||| ||| || |||||||| || ||||| ||||||||||||||||
Sbjct 70 TCAGGCGTCAGTTGGGCGGTCAGGCCGAGGGTGCGGGCACTGAACAGGG 118
>seq2061642
Length=127
Score = 116 bits (128), Expect = 6e-24
Identities = 91/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 163 TCTGGCAAGCCGGCGAGCTCATGGCCGATGAGCAGGCCAGACAGGTAATCGGGTTGCTGG 222
|| || || |||||||| ||||| ||||| |||||||| |||||| | ||||| |||||
Sbjct 19 TCGGGTAAACCGGCGAGTTCATGACCGATCAGCAGGCCGGACAGGGAGTCGGGCTGCTGC 78
Query 223 TCGGGCGCCAGCTGCGCGGTCAGCCCAAGGGTACGGGCACTGAACAGGG 271
|| |||| ||| || |||||||| || ||||| ||||||||||||||||
Sbjct 79 TCAGGCGTCAGTTGGGCGGTCAGGCCGAGGGTGCGGGCACTGAACAGGG 127
>seq1659634
Length=127
Score = 116 bits (128), Expect = 6e-24
Identities = 104/127 (82%), Gaps = 4/127 (3%)
Strand=Plus/Minus
Query 91 GCGAGGGCGCGTTGATAGCGGGCGCAAAGTGCAGCAGCGCCGACCAGGATGATCGGC-TG 149
|||||||| ||||||||||||||||| || | || || |||||||||| ||||||| ||
Sbjct 126 GCGAGGGCACGTTGATAGCGGGCGCAGAGGGGGGCGGCACCGACCAGGACGATCGGCTTG 67
Query 150 ATGTTTG-GCCGAATCTGGCAAGCCGGCGAGCTCATGGCCGATGAGCAGGCCAGACAGGT 208
||||| || | || || || |||||||| ||||| ||||| |||||||| |||||||
Sbjct 66 GGGTTTGCGCTG--TCGGGTAAACCGGCGAGTTCATGACCGATCAGCAGGCCGGACAGGT 9
Query 209 AATCGGG 215
| |||||
Sbjct 8 AGTCGGG 2
>seq1161321
Length=118
Score = 107 bits (118), Expect = 3e-21
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 91 GCGAGGGCGCGTTGATAGCGGGCGCAAAGTGCAGCAGCGCCGACCAGGATGATCGGCTGA 150
|||||||| ||||||||||||||||| || | || || |||||||||| ||||||||
Sbjct 2 GCGAGGGCACGTTGATAGCGGGCGCAGAGGGGGGCGGCACCGACCAGGACGATCGGCTTG 61
Query 151 TGTTTGGCCGAATCTGGCAAGCCGGCGAGCTCATGGCCGATGAGCAGGCCAGACAGG 207
|||| || || || || |||||||| ||||| ||||| |||||||| ||||||
Sbjct 62 GGTTTTGCGCTGTCGGGTAAACCGGCGAGTTCATGACCGATCAGCAGGCCGGACAGG 118
>seq3015306
Length=767
Score = 77.0 bits (84), Expect = 5e-12
Identities = 56/65 (86%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 211 TCGGGTTGCTGGTCGGGCGCCAGCTGCGCGGTCAGCCCAAGGGTACGGGCACTGAACAGG 270
||||| ||||| || |||| ||| || |||||||| || ||||| |||||||||||||||
Sbjct 3 TCGGGCTGCTGCTCAGGCGTCAGTTGGGCGGTCAGGCCGAGGGTGCGGGCACTGAACAGG 62
Query 271 GTCGA 275
|||||
Sbjct 63 GTCGA 67
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 757438502796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |