Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001212.1
Length=311
Score E
Sequences producing significant alignments: (Bits) Value
seq2971980 403 3e-110
seq2948754 385 8e-105
seq268420 358 1e-96
seq3086981 340 3e-91
seq2859426 214 3e-53
seq638666 86.0 1e-14
>seq2971980
Length=523
Score = 403 bits (446), Expect = 3e-110
Identities = 276/311 (89%), Gaps = 0/311 (0%)
Strand=Plus/Plus
Query 1 TCGAGCTGTATTTTTTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTGCTGTG 60
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 100 TCGAGCTGTATTTTTTCACCCGCGTTTTTGGCTGCTATGGCTGGGGCTCGGCCTGCTGTG 159
Query 61 GCTGGTCACCCAGTTGCCCTACCGTGCGCTGTTGACCATTGGTCGCCTGCTGGGTGCGGG 120
|||| ||||||||||||| ||||| ||| |||||||||||||||| | |||| |||||
Sbjct 160 GCTGATCACCCAGTTGCCATACCGCGCGTTGTTGACCATTGGTCGTTTATTGGGCGCGGG 219
Query 121 GATGTACCGTGTGGCCGGCGAACGCCGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTT 180
|||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 220 CATGTACCGCGTGGCTGGCGAGCGCCGCCGCATCGCCGCGCGCAACCTGGAACTGTGCTT 279
Query 181 CCCGGAAAAATCCGCGAAAGAGCGTAAACATTTGCTTAAAGAAAACTTTGCCTCCACCGG 240
||||||||||||||| |||| ||| || | |||| || ||||| || || ||||||||
Sbjct 280 CCCGGAAAAATCCGCCAAAGCGCGCAAGAAGCTGCTCAAGGAAAATTTCGCTTCCACCGG 339
Query 241 CATCGCCTTCTTTGAGATGGCCATGAGCTGGTGGTGGTCGCGCCAGCGCCTGGCGCGCCT 300
|||||| || || ||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 340 CATCGCGTTTTTCGAGATGGCCATGAGCTGGTGGTGGTCGCGTCAACGCCTGGCACGCCT 399
Query 301 GGCCCACGTCG 311
|||||| ||||
Sbjct 400 GGCCCATGTCG 410
>seq2948754
Length=441
Score = 385 bits (426), Expect = 8e-105
Identities = 272/311 (87%), Gaps = 0/311 (0%)
Strand=Plus/Plus
Query 1 TCGAGCTGTATTTTTTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTGCTGTG 60
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 9 TCGAGCTGTATTTTTTCACCCGCGCTTTTGGCTGTTATGGCTGGGACTCGGCCTGCTGTG 68
Query 61 GCTGGTCACCCAGTTGCCCTACCGTGCGCTGTTGACCATTGGTCGCCTGCTGGGTGCGGG 120
|||| | |||||||||||||||||||| ||| ||||||||||||| | || ||||| ||
Sbjct 69 GCTGATTACCCAGTTGCCCTACCGTGCACTGCTGACCATTGGTCGATTACTTGGTGCCGG 128
Query 121 GATGTACCGTGTGGCCGGCGAACGCCGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTT 180
|||||||| ||||||| || |||||||||||||| ||||| ||||| || ||||||||
Sbjct 129 CATGTACCGCGTGGCCGCTGATCGCCGCCGCATCGCTGCGCGCAACCTCGAGCTGTGCTT 188
Query 181 CCCGGAAAAATCCGCGAAAGAGCGTAAACATTTGCTTAAAGAAAACTTTGCCTCCACCGG 240
||||||||||||||| || |||||||||| |||| || |||||||| || ||||||||
Sbjct 189 CCCGGAAAAATCCGCCAAGGAGCGTAAACGGCTGCTCAAGGAAAACTTCGCGTCCACCGG 248
Query 241 CATCGCCTTCTTTGAGATGGCCATGAGCTGGTGGTGGTCGCGCCAGCGCCTGGCGCGCCT 300
|||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 249 CATCGCCTTCTTCGAGATGGCCATGAGCTGGTGGTGGCCCAAGTCGCGCCTGGCGCGCCT 308
Query 301 GGCCCACGTCG 311
|||||| ||||
Sbjct 309 GGCCCATGTCG 319
>seq268420
Length=2498
Score = 358 bits (396), Expect = 1e-96
Identities = 266/311 (86%), Gaps = 0/311 (0%)
Strand=Plus/Minus
Query 1 TCGAGCTGTATTTTTTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTGCTGTG 60
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||| ||||
Sbjct 2490 TCGAGCTGTATTTTTTCACCCGCGCTTTTGGCTGTTATGGCTGGGACTCGGCCTGTTGTG 2431
Query 61 GCTGGTCACCCAGTTGCCCTACCGTGCGCTGTTGACCATTGGTCGCCTGCTGGGTGCGGG 120
|||| | |||||||||||||||||||| || ||||||||||||| | || || || ||
Sbjct 2430 GCTGATTACCCAGTTGCCCTACCGTGCATTGCTGACCATTGGTCGATTACTTGGCGCCGG 2371
Query 121 GATGTACCGTGTGGCCGGCGAACGCCGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTT 180
|||||||| ||||||| || || ||||||||||||||||| ||||| || ||||||||
Sbjct 2370 CATGTACCGCGTGGCCGCTGATCGTCGCCGCATCGCCGCGCGCAACCTCGAGCTGTGCTT 2311
Query 181 CCCGGAAAAATCCGCGAAAGAGCGTAAACATTTGCTTAAAGAAAACTTTGCCTCCACCGG 240
||||||||||||||| || || ||||||| |||| || |||||||| || ||||||||
Sbjct 2310 CCCGGAAAAATCCGCCAAGGAACGTAAACGGCTGCTCAAGGAAAACTTCGCGTCCACCGG 2251
Query 241 CATCGCCTTCTTTGAGATGGCCATGAGCTGGTGGTGGTCGCGCCAGCGCCTGGCGCGCCT 300
||| |||||||| |||||||||||||||||||||||| | ||| |||||||||||
Sbjct 2250 CATTGCCTTCTTCGAGATGGCCATGAGCTGGTGGTGGCCCAAGGCGCGTCTGGCGCGCCT 2191
Query 301 GGCCCACGTCG 311
|||||| ||||
Sbjct 2190 GGCCCATGTCG 2180
>seq3086981
Length=4505
Score = 340 bits (376), Expect = 3e-91
Identities = 262/311 (84%), Gaps = 0/311 (0%)
Strand=Plus/Plus
Query 1 TCGAGCTGTATTTTTTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTGCTGTG 60
||||||||||||| ||||||||||||| |||| ||||||||||||||| |||||| ||||
Sbjct 51 TCGAGCTGTATTTCTTCACCCGCGTTTTTGGCCGTTATGGCTGGGGCTGGGCCTGTTGTG 110
Query 61 GCTGGTCACCCAGTTGCCCTACCGTGCGCTGTTGACCATTGGTCGCCTGCTGGGTGCGGG 120
|||||||||||| |||| ||||| | |||| |||||||||||||||||||||| |||||
Sbjct 111 GCTGGTCACCCAACTGCCGTACCGCGTGCTGCTGACCATTGGTCGCCTGCTGGGCGCGGG 170
Query 121 GATGTACCGTGTGGCCGGCGAACGCCGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTT 180
|||||||| |||||||| || || ||||| || || || || ||||| || ||||||||
Sbjct 171 CATGTACCGCGTGGCCGGTGAGCGTCGCCGTATTGCGGCACGCAACCTTGAGCTGTGCTT 230
Query 181 CCCGGAAAAATCCGCGAAAGAGCGTAAACATTTGCTTAAAGAAAACTTTGCCTCCACCGG 240
|||||||| ||||| ||| ||| |||| |||| || ||||| ||||||||||||||
Sbjct 231 TCCGGAAAAGTCCGCCCAAGCGCGCAAACGCCTGCTCAAGGAAAATTTTGCCTCCACCGG 290
Query 241 CATCGCCTTCTTTGAGATGGCCATGAGCTGGTGGTGGTCGCGCCAGCGCCTGGCGCGCCT 300
|||||||| || |||||||| ||||||||||||||| | | ||| ||||| |||||
Sbjct 291 TATCGCCTTTTTCGAGATGGCGATGAGCTGGTGGTGGCCCAAGCCGCGTCTGGCACGCCT 350
Query 301 GGCCCACGTCG 311
|||||| ||||
Sbjct 351 GGCCCATGTCG 361
>seq2859426
Length=279
Score = 214 bits (236), Expect = 3e-53
Identities = 147/166 (89%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 146 CGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTTCCCGGAAAAATCCGCGAAAGAGCGT 205
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1 CGCCGCATCGCCGCGCGCAACCTGGAACTGTGCTTTCCGGAAAAATCCGCCAAAGAGCGC 60
Query 206 AAACATTTGCTTAAAGAAAACTTTGCCTCCACCGGCATCGCCTTCTTTGAGATGGCCATG 265
|| | |||| || ||||| || ||||||||||||||||| || || ||||||||||||
Sbjct 61 AAGAAGCTGCTCAAGGAAAATTTCGCCTCCACCGGCATCGCGTTTTTCGAGATGGCCATG 120
Query 266 AGCTGGTGGTGGTCGCGCCAGCGCCTGGCGCGCCTGGCCCACGTCG 311
|||||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct 121 AGCTGGTGGTGGTCACGTCAGCGCCTGGCACGCCTGGCCCATGTCG 166
>seq638666
Length=105
Score = 86.0 bits (94), Expect = 1e-14
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 1 TCGAGCTGTATTTTTTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTG 55
|||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 55 TCGAGCTGTATTTTTTCACCCGCGCTTTTGGCTGTTATGGCTGGGACTCGGCCTG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 865225773792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |