Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001212.1 Length=311 Score E Sequences producing significant alignments: (Bits) Value seq2971980 403 3e-110 seq2948754 385 8e-105 seq268420 358 1e-96 seq3086981 340 3e-91 seq2859426 214 3e-53 seq638666 86.0 1e-14 >seq2971980 Length=523 Score = 403 bits (446), Expect = 3e-110 Identities = 276/311 (89%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 1 TCGAGCTGTATTTTTTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTGCTGTG 60 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 100 TCGAGCTGTATTTTTTCACCCGCGTTTTTGGCTGCTATGGCTGGGGCTCGGCCTGCTGTG 159 Query 61 GCTGGTCACCCAGTTGCCCTACCGTGCGCTGTTGACCATTGGTCGCCTGCTGGGTGCGGG 120 |||| ||||||||||||| ||||| ||| |||||||||||||||| | |||| ||||| Sbjct 160 GCTGATCACCCAGTTGCCATACCGCGCGTTGTTGACCATTGGTCGTTTATTGGGCGCGGG 219 Query 121 GATGTACCGTGTGGCCGGCGAACGCCGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTT 180 |||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 220 CATGTACCGCGTGGCTGGCGAGCGCCGCCGCATCGCCGCGCGCAACCTGGAACTGTGCTT 279 Query 181 CCCGGAAAAATCCGCGAAAGAGCGTAAACATTTGCTTAAAGAAAACTTTGCCTCCACCGG 240 ||||||||||||||| |||| ||| || | |||| || ||||| || || |||||||| Sbjct 280 CCCGGAAAAATCCGCCAAAGCGCGCAAGAAGCTGCTCAAGGAAAATTTCGCTTCCACCGG 339 Query 241 CATCGCCTTCTTTGAGATGGCCATGAGCTGGTGGTGGTCGCGCCAGCGCCTGGCGCGCCT 300 |||||| || || ||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 340 CATCGCGTTTTTCGAGATGGCCATGAGCTGGTGGTGGTCGCGTCAACGCCTGGCACGCCT 399 Query 301 GGCCCACGTCG 311 |||||| |||| Sbjct 400 GGCCCATGTCG 410 >seq2948754 Length=441 Score = 385 bits (426), Expect = 8e-105 Identities = 272/311 (87%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 1 TCGAGCTGTATTTTTTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTGCTGTG 60 |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| Sbjct 9 TCGAGCTGTATTTTTTCACCCGCGCTTTTGGCTGTTATGGCTGGGACTCGGCCTGCTGTG 68 Query 61 GCTGGTCACCCAGTTGCCCTACCGTGCGCTGTTGACCATTGGTCGCCTGCTGGGTGCGGG 120 |||| | |||||||||||||||||||| ||| ||||||||||||| | || ||||| || Sbjct 69 GCTGATTACCCAGTTGCCCTACCGTGCACTGCTGACCATTGGTCGATTACTTGGTGCCGG 128 Query 121 GATGTACCGTGTGGCCGGCGAACGCCGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTT 180 |||||||| ||||||| || |||||||||||||| ||||| ||||| || |||||||| Sbjct 129 CATGTACCGCGTGGCCGCTGATCGCCGCCGCATCGCTGCGCGCAACCTCGAGCTGTGCTT 188 Query 181 CCCGGAAAAATCCGCGAAAGAGCGTAAACATTTGCTTAAAGAAAACTTTGCCTCCACCGG 240 ||||||||||||||| || |||||||||| |||| || |||||||| || |||||||| Sbjct 189 CCCGGAAAAATCCGCCAAGGAGCGTAAACGGCTGCTCAAGGAAAACTTCGCGTCCACCGG 248 Query 241 CATCGCCTTCTTTGAGATGGCCATGAGCTGGTGGTGGTCGCGCCAGCGCCTGGCGCGCCT 300 |||||||||||| |||||||||||||||||||||||| | ||||||||||||||| Sbjct 249 CATCGCCTTCTTCGAGATGGCCATGAGCTGGTGGTGGCCCAAGTCGCGCCTGGCGCGCCT 308 Query 301 GGCCCACGTCG 311 |||||| |||| Sbjct 309 GGCCCATGTCG 319 >seq268420 Length=2498 Score = 358 bits (396), Expect = 1e-96 Identities = 266/311 (86%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 1 TCGAGCTGTATTTTTTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTGCTGTG 60 |||||||||||||||||||||||| || ||||||||||||||||| ||||||||| |||| Sbjct 2490 TCGAGCTGTATTTTTTCACCCGCGCTTTTGGCTGTTATGGCTGGGACTCGGCCTGTTGTG 2431 Query 61 GCTGGTCACCCAGTTGCCCTACCGTGCGCTGTTGACCATTGGTCGCCTGCTGGGTGCGGG 120 |||| | |||||||||||||||||||| || ||||||||||||| | || || || || Sbjct 2430 GCTGATTACCCAGTTGCCCTACCGTGCATTGCTGACCATTGGTCGATTACTTGGCGCCGG 2371 Query 121 GATGTACCGTGTGGCCGGCGAACGCCGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTT 180 |||||||| ||||||| || || ||||||||||||||||| ||||| || |||||||| Sbjct 2370 CATGTACCGCGTGGCCGCTGATCGTCGCCGCATCGCCGCGCGCAACCTCGAGCTGTGCTT 2311 Query 181 CCCGGAAAAATCCGCGAAAGAGCGTAAACATTTGCTTAAAGAAAACTTTGCCTCCACCGG 240 ||||||||||||||| || || ||||||| |||| || |||||||| || |||||||| Sbjct 2310 CCCGGAAAAATCCGCCAAGGAACGTAAACGGCTGCTCAAGGAAAACTTCGCGTCCACCGG 2251 Query 241 CATCGCCTTCTTTGAGATGGCCATGAGCTGGTGGTGGTCGCGCCAGCGCCTGGCGCGCCT 300 ||| |||||||| |||||||||||||||||||||||| | ||| ||||||||||| Sbjct 2250 CATTGCCTTCTTCGAGATGGCCATGAGCTGGTGGTGGCCCAAGGCGCGTCTGGCGCGCCT 2191 Query 301 GGCCCACGTCG 311 |||||| |||| Sbjct 2190 GGCCCATGTCG 2180 >seq3086981 Length=4505 Score = 340 bits (376), Expect = 3e-91 Identities = 262/311 (84%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 1 TCGAGCTGTATTTTTTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTGCTGTG 60 ||||||||||||| ||||||||||||| |||| ||||||||||||||| |||||| |||| Sbjct 51 TCGAGCTGTATTTCTTCACCCGCGTTTTTGGCCGTTATGGCTGGGGCTGGGCCTGTTGTG 110 Query 61 GCTGGTCACCCAGTTGCCCTACCGTGCGCTGTTGACCATTGGTCGCCTGCTGGGTGCGGG 120 |||||||||||| |||| ||||| | |||| |||||||||||||||||||||| ||||| Sbjct 111 GCTGGTCACCCAACTGCCGTACCGCGTGCTGCTGACCATTGGTCGCCTGCTGGGCGCGGG 170 Query 121 GATGTACCGTGTGGCCGGCGAACGCCGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTT 180 |||||||| |||||||| || || ||||| || || || || ||||| || |||||||| Sbjct 171 CATGTACCGCGTGGCCGGTGAGCGTCGCCGTATTGCGGCACGCAACCTTGAGCTGTGCTT 230 Query 181 CCCGGAAAAATCCGCGAAAGAGCGTAAACATTTGCTTAAAGAAAACTTTGCCTCCACCGG 240 |||||||| ||||| ||| ||| |||| |||| || ||||| |||||||||||||| Sbjct 231 TCCGGAAAAGTCCGCCCAAGCGCGCAAACGCCTGCTCAAGGAAAATTTTGCCTCCACCGG 290 Query 241 CATCGCCTTCTTTGAGATGGCCATGAGCTGGTGGTGGTCGCGCCAGCGCCTGGCGCGCCT 300 |||||||| || |||||||| ||||||||||||||| | | ||| ||||| ||||| Sbjct 291 TATCGCCTTTTTCGAGATGGCGATGAGCTGGTGGTGGCCCAAGCCGCGTCTGGCACGCCT 350 Query 301 GGCCCACGTCG 311 |||||| |||| Sbjct 351 GGCCCATGTCG 361 >seq2859426 Length=279 Score = 214 bits (236), Expect = 3e-53 Identities = 147/166 (89%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 146 CGCCGCATCGCCGCGCGAAACCTGGAACTGTGCTTCCCGGAAAAATCCGCGAAAGAGCGT 205 ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| Sbjct 1 CGCCGCATCGCCGCGCGCAACCTGGAACTGTGCTTTCCGGAAAAATCCGCCAAAGAGCGC 60 Query 206 AAACATTTGCTTAAAGAAAACTTTGCCTCCACCGGCATCGCCTTCTTTGAGATGGCCATG 265 || | |||| || ||||| || ||||||||||||||||| || || |||||||||||| Sbjct 61 AAGAAGCTGCTCAAGGAAAATTTCGCCTCCACCGGCATCGCGTTTTTCGAGATGGCCATG 120 Query 266 AGCTGGTGGTGGTCGCGCCAGCGCCTGGCGCGCCTGGCCCACGTCG 311 |||||||||||||| || ||||||||||| ||||||||||| |||| Sbjct 121 AGCTGGTGGTGGTCACGTCAGCGCCTGGCACGCCTGGCCCATGTCG 166 >seq638666 Length=105 Score = 86.0 bits (94), Expect = 1e-14 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 1 TCGAGCTGTATTTTTTCACCCGCGTTTCTGGCTGTTATGGCTGGGGCTCGGCCTG 55 |||||||||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct 55 TCGAGCTGTATTTTTTCACCCGCGCTTTTGGCTGTTATGGCTGGGACTCGGCCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 865225773792