Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001228.1 Length=576 Score E Sequences producing significant alignments: (Bits) Value seq284874 562 1e-157 seq3088368 401 2e-109 seq2967947 354 3e-95 seq336205 338 2e-90 seq2331719 196 2e-47 seq3058156 185 3e-44 seq296765 176 2e-41 seq2890769 125 2e-26 seq2748290 107 6e-21 >seq284874 Length=7235 Score = 562 bits (622), Expect = 1e-157 Identities = 473/582 (81%), Gaps = 18/582 (3%) Strand=Plus/Plus Query 12 TCACGGCGGCCGACCTGAAGCTGGCCCTGGCCGAGATGGAGCAGTTCTACGACGTGCAAC 71 |||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||| Sbjct 3921 TCACGGCGGCCGACTTGAAGCTGGCGCTGGCCGAGATGGAGCAGTTTTACGATGTGCAAC 3980 Query 72 CGTCTGAGCTTGAGCAGCTCGATCCACGCGGCGCAGGGCCATGCACGGCGGCGCAGCATC 131 || ||||| || ||| | |||||| || || | ||||| ||| | || ||||||||| Sbjct 3981 CGAGCGAGCTCGAACAGTT-GATCCATGCCGCAGAAGGCCACGCAAGACGCCGCAGCATC 4039 Query 132 GGCGAGGTGCT---CAGTCGC--------------CGTGCATAAATGCAATAACGACCTG 174 ||||| || || | ||||| ||||||||||||||| ||||||||| Sbjct 4040 GGCGAAGTACTGGCCCGTCGCGCCGCCTGAGCCTGCGTGCATAAATGCAAAAACGACCTG 4099 Query 175 CAGGATTCCCCGGTGTACTGGGCAAATGTGCACTGGTAGGATCGCAAGAAGGTTCGTCCC 234 || |||||| | |||||||||||||| |||||||||| |||||| ||| |||| ||| Sbjct 4100 CATGATTCCGGGTTGTACTGGGCAAATTTGCACTGGTACGATCGCGAGATAGTTCCTCCG 4159 Query 235 CGAACATCTTGATAAAGAACAATAAAAGCAGGGAGTTAGCGATGACTGCTCAGGTTTCAT 294 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 4160 CGAACATCTTGATAAAGAACAATAAAAGCAGGGAGTTACAGATGACTGCTCAGGTTTCAT 4219 Query 295 CCGAGGCAAGCCACACCGACCATCTTCAAGCCGACATACTCGCCGAAGTCCGCAACCATA 354 |||| ||||||| | |||| |||||| | ||| | || ||||| || |||||||| | Sbjct 4220 CCGAAGCAAGCCGCGCCGAAATTCTTCAGGACGAAGTGCTGGCCGACGTTCGCAACCACA 4279 Query 355 TCGGCCACCTCACCCTCAACCGCCCCGCCGGCCTGAACGCCATTACCCTGGACATGGTCC 414 | ||||||||||||||||| |||||||| ||| |||| ||||| |||||||||||||| | Sbjct 4280 TTGGCCACCTCACCCTCAATCGCCCCGCTGGCTTGAATGCCATCACCCTGGACATGGTTC 4339 Query 415 GCAGCCTGAGCCACCACCTGCAGGCCTGGGCCGACGATCCCACGGTGTATGCCGTGGTCC 474 ||||||||| || | ||||||||||| || || || ||| || |||||||| | Sbjct 4340 GCAGCCTGACGGCGCAGTTACAGGCCTGGGCGGATGACCCGCAGGTCTACGCCGTGGTGC 4399 Query 475 TGCGCGGCGCCGGGGAAAAAGCCTTCTGCGCGGGCGGCGATATCCGTTCCTTGCATGACA 534 |||||||||| || ||||||||||| ||||| || ||||| |||||||| || | |||| Sbjct 4400 TGCGCGGCGCTGGCGAAAAAGCCTTTTGCGCCGGTGGCGACATCCGTTCGCTGTACGACA 4459 Query 535 GTTTCAAGAGCGGCGACACCCTGCACGAAGACTTCTTTGTCG 576 | ||||||| |||||||| |||||||| |||||||| |||| Sbjct 4460 GCTTCAAGAACGGCGACAGCCTGCACGCCGACTTCTTCGTCG 4501 >seq3088368 Length=10301 Score = 401 bits (444), Expect = 2e-109 Identities = 349/428 (82%), Gaps = 4/428 (1%) Strand=Plus/Minus Query 149 CCGTGCATAAATGCAATAACGACCTGCAGGATTCCCCGGTGTACTGGGCAAATGTGCACT 208 |||||||||||||||| ||||||||||| |||||| | ||||| ||||||| ||| || Sbjct 2257 CCGTGCATAAATGCAACAACGACCTGCATGATTCCGGGTTGTACGCGGCAAATTTGCGCT 2198 Query 209 GGTAGGATCGCAAGAAGGTTCGTCCCCGAACATCTTGATAAAGAACAATAAAAGCAGGGA 268 |||| |||| || |||||| |||||||||| |||||||||||||||||||||||||| Sbjct 2197 GGTACGATCAGGCGATGGTTCGCCCCCGAACATTTTGATAAAGAACAATAAAAGCAGGGA 2138 Query 269 GTTAGCGATGACTGCTCAGGTTTCATCCGAGGCAAGCCACACCGACCATCTTCAAGCCG- 327 ||||| ||||||||||||||| || |||| |||||||||||||| || | ||| | Sbjct 2137 GTTAGTGATGACTGCTCAGGTGTCCCCCGAAGCAAGCCACACCGATAGTCAGC-AGCAGC 2079 Query 328 ACATACTCGCCGAAGTCCGCAACCATATCGGCCACCTCACCCTCAACCGCCCCGCCGGCC 387 | |||| || || || ||||||||||| ||||||||||||||||||||||||| Sbjct 2078 AAGTACTGAGTGAGGTGCGTAACCATATCGGTTACCTCACCCTCAACCGCCCCGCCGGTT 2019 Query 388 TGAACGCCATTACCCTGGACATGGTCCGCAGCCTGAGCCAC-CACCTGCAGGCCTGGGCC 446 |||| ||||| |||||||||||||| || | ||| | || | || |||||||||||| Sbjct 2018 TGAATGCCATCACCCTGGACATGGTGCGGCGGATGA-CAACGCGGCTACAGGCCTGGGCC 1960 Query 447 GACGATCCCACGGTGTATGCCGTGGTCCTGCGCGGCGCCGGGGAAAAAGCCTTCTGCGCG 506 | || || ||| || ||||| || ||||||||| |||| || || ||||||||||| Sbjct 1959 GCTGACCCGCTGGTCTACGCCGTTGTGCTGCGCGGCTCCGGCGACAAGGCCTTCTGCGCC 1900 Query 507 GGCGGCGATATCCGTTCCTTGCATGACAGTTTCAAGAGCGGCGACACCCTGCACGAAGAC 566 |||||||||||||||||| || | ||||| |||||| | |||||||||||||| |||||| Sbjct 1899 GGCGGCGATATCCGTTCCCTGTACGACAGCTTCAAGGGTGGCGACACCCTGCATGAAGAC 1840 Query 567 TTCTTTGT 574 ||||| || Sbjct 1839 TTCTTCGT 1832 Score = 102 bits (112), Expect = 3e-19 Identities = 115/152 (76%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 1 CGACCCCGAGGTCACGGCGGCCGACCTGAAGCTGGCCCTGGCCGAGATGGAGCAGTTCTA 60 |||||| | |||| ||||||||||| |||||||| ||||||| ||||||||||||| Sbjct 6778 CGACCCGGCCATCACTGCGGCCGACCTCAAGCTGGCGTTGGCCGATATGGAGCAGTTCTT 6719 Query 61 CGACGTGCAACCGTCTGAGCTTGAGCAGCTCGATCCACGCGGCGCAGGGCCATGCACGGC 120 ||||| | || | | ||| ||| | | ||| ||| | || | ||||| || || | Sbjct 6718 TGACGTCGAGCCCACGGCGCTGGAGGA-ATTGATTCACTCCGCCGAAGGCCACGCGCGAC 6660 Query 121 GGCGCAGCATCGGCGAGGTGCT---CAGTCGC 149 | ||||||||||||||||| || ||||||| Sbjct 6659 GCCGCAGCATCGGCGAGGTCCTGGCCAGTCGC 6628 >seq2967947 Length=507 Score = 354 bits (392), Expect = 3e-95 Identities = 280/333 (84%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 245 GATAAAGAACAATAAAAGCAGGGAGTTAGCGATGACTGCTCAGGTTTCATCCGAGGCAAG 304 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 507 GATAAAGAACAATAAAAGCAGGGAGTTAGTGATGACTGCTCAGGTTTCATCCGAAGCAAG 448 Query 305 CCACACCGACCATCTTCAAGCCGACATACTCGCCGAAGTCCGCAACCATATCGGCCACCT 364 ||| || |||||||| ||| |||| || |||||||| ||||||||||||||||| Sbjct 447 CCAGGCCAGAATTCTTCAAGACGAGGTACTGGCTGAAGTCCGTAACCATATCGGCCACCT 388 Query 365 CACCCTCAACCGCCCCGCCGGCCTGAACGCCATTACCCTGGACATGGTCCGCAGCCTGAG 424 |||||| |||||||||||||| |||| ||||| |||||||||||||||||||| |||| Sbjct 387 CACCCTTAACCGCCCCGCCGGTTTGAATGCCATCACCCTGGACATGGTCCGCAGTCTGA- 329 Query 425 CCAC-CACCTGCAGGCCTGGGCCGACGATCCCACGGTGTATGCCGTGGTCCTGCGCGGCG 483 |||| || ||||| ||||||| || || || ||||||||| |||||||||||||| | Sbjct 328 CCACGCAGTTGCAGACCTGGGCGGATGACCCGCAGGTGTATGCGGTGGTCCTGCGCGGTG 269 Query 484 CCGGGGAAAAAGCCTTCTGCGCGGGCGGCGATATCCGTTCCTTGCATGACAGTTTCAAGA 543 |||| || || || |||||||||||||||||||| || ||| | | ||||| |||||| Sbjct 268 CCGGTGACAAGGCGTTCTGCGCGGGCGGCGATATTCGCTCCCTCTACGACAGCTTCAAGC 209 Query 544 GCGGCGACACCCTGCACGAAGACTTCTTTGTCG 576 ||||||| ||||||| | || ||||| |||| Sbjct 208 AGGGCGACAGCCTGCACCAGGATTTCTTCGTCG 176 >seq336205 Length=2477 Score = 338 bits (374), Expect = 2e-90 Identities = 274/332 (83%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 245 GATAAAGAACAATAAAAGCAGGGAGTTAGCGATGACTGCTCAGGTTTCATCCGAGGCAAG 304 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 2477 GATAAAGAACAATAAAAGCAGGGAGTTAGTGATGACTGCTCAGGTTTCATCCGAAGCAAG 2418 Query 305 CCACACCGACCATCTTCAAGCCGACATACTCGCCGAAGTCCGCAACCATATCGGCCACCT 364 |||| || |||||| | ||| |||| ||||| || || |||||||| |||||||| Sbjct 2417 CCACGCCAGGATTCTTCAGGACGAGGTACTGGCCGACGTTCGTAACCATATTGGCCACCT 2358 Query 365 CACCCTCAACCGCCCCGCCGGCCTGAACGCCATTACCCTGGACATGGTCCGCAGCCTGAG 424 |||||||||||||||||||||| |||| ||||| |||||||| |||||||| ||| ||| Sbjct 2357 CACCCTCAACCGCCCCGCCGGCTTGAATGCCATCACCCTGGAGATGGTCCGTAGCTTGAC 2298 Query 425 CCACCACCTGCAGGCCTGGGCCGACGATCCCACGGTGTATGCCGTGGTCCTGCGCGGCGC 484 | || ||||||||||||| || || || ||||||||||||||||||||||||||| Sbjct 2297 CGCGCAGTTGCAGGCCTGGGCAGATGACCCGCAGGTGTATGCCGTGGTCCTGCGCGGCGC 2238 Query 485 CGGGGAAAAAGCCTTCTGCGCGGGCGGCGATATCCGTTCCTTGCATGACAGTTTCAAGAG 544 ||| ||||| || || ||||| || ||||| || ||||| | | ||||| |||||| Sbjct 2237 CGGTGAAAAGGCTTTTTGCGCCGGTGGCGACATTCGTTCTCTCTACGACAGCTTCAAGCA 2178 Query 545 CGGCGACACCCTGCACGAAGACTTCTTTGTCG 576 ||||||| |||||| | ||||| || |||| Sbjct 2177 GGGCGACAGCCTGCATCAGGACTTTTTCGTCG 2146 >seq2331719 Length=141 Score = 196 bits (216), Expect = 2e-47 Identities = 128/141 (91%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 167 ACGACCTGCAGGATTCCCCGGTGTACTGGGCAAATGTGCACTGGTAGGATCGCAAGAAGG 226 |||||||||| |||||| | |||||||||||||| |||||||||| |||||| ||| | Sbjct 141 ACGACCTGCATGATTCCGGGTTGTACTGGGCAAATTTGCACTGGTACGATCGCGAGATAG 82 Query 227 TTCGTCCCCGAACATCTTGATAAAGAACAATAAAAGCAGGGAGTTAGCGATGACTGCTCA 286 ||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 81 TTCGTGCGCGAACATCTTGATAAAGAACAATAAAAGCAGGGAGTTAGTGATGACTGCTCA 22 Query 287 GGTTTCATCCGAGGCAAGCCA 307 |||||||||||| |||||||| Sbjct 21 GGTTTCATCCGAAGCAAGCCA 1 >seq3058156 Length=1293 Score = 185 bits (204), Expect = 3e-44 Identities = 159/196 (81%), Gaps = 7/196 (4%) Strand=Plus/Plus Query 12 TCACGGCGGCCGACCTGAAGCTGGCCCTGGCCGAGATGGAGCAGTTCTACGACGTGCAAC 71 ||||||| ||||| |||||||||||||||||||| ||||||||||||| || ||| | | Sbjct 1097 TCACGGCAGCCGATCTGAAGCTGGCCCTGGCCGACATGGAGCAGTTCTTTGATGTGGAGC 1156 Query 72 CGTCTGAGCTTGAGCAGCTCGATCCACGCGGCGCAGGGCCATGCACGGCGGCGCAGCATC 131 | | ||||| ||||| | ||||||||| ||| | |||||||| ||||| ||||||||| Sbjct 1157 CCACCGAGCTGGAGCA-ATTGATCCACGCAGCGGAAGGCCATGCCCGGCGCCGCAGCATC 1215 Query 132 GGCGAGGTGCTCAGTCGCCG------TGCATAAATGCAATAACGACCTGCAGGATTCCCC 185 | || ||||| || |||| ||||||||||||| ||||||||||| |||||| Sbjct 1216 GCTGAAGTGCTGGGTAGCCGCAGCGCTGCATAAATGCAAAAACGACCTGCATGATTCCGG 1275 Query 186 GGTGTACTGGGCAAAT 201 | |||||||||||||| Sbjct 1276 GTTGTACTGGGCAAAT 1291 >seq296765 Length=4350 Score = 176 bits (194), Expect = 2e-41 Identities = 157/194 (81%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 14 ACGGCGGCCGACCTGAAGCTGGCCCTGGCCGAGATGGAGCAGTTCTACGACGTGCAACCG 73 || || ||||||||||||||||| |||||||| ||||| ||||||| || ||| | ||| Sbjct 4156 ACCGCCGCCGACCTGAAGCTGGCTCTGGCCGACATGGAACAGTTCTTTGATGTGGAGCCG 4215 Query 74 TCTGAGCTTGAGCAGCTCGATCCACGCGGCGCAGGGCCATGCACGGCGGCGCAGCATCGG 133 | ||||| || ||| | |||||||||||| | ||||| || || || ||||||||||| Sbjct 4216 ACAGAGCTGGAACAG-TTGATCCACGCGGCAGAAGGCCACGCCCGACGCCGCAGCATCGG 4274 Query 134 CGAGGTGCT---CAGTCGCCG---TGCATAAATGCAATAACGACCTGCAGGATTCCCCGG 187 ||| ||||| ||| ||| | ||||||||||||| ||||||||||| |||||| | Sbjct 4275 CGAAGTGCTGGGCAGCCGCAGCGCTGCATAAATGCAAAAACGACCTGCATGATTCCGGGT 4334 Query 188 TGTACTGGGCAAAT 201 |||||||||||||| Sbjct 4335 TGTACTGGGCAAAT 4348 >seq2890769 Length=317 Score = 125 bits (138), Expect = 2e-26 Identities = 107/131 (82%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 12 TCACGGCGGCCGACCTGAAGCTGGCCCTGGCCGAGATGGAGCAGTTCTACGACGTGCAAC 71 |||||||||||||| |||| | ||| |||||||||||||||||||| ||||| ||||||| Sbjct 172 TCACGGCGGCCGACTTGAAACGGGCGCTGGCCGAGATGGAGCAGTTTTACGATGTGCAAC 113 Query 72 CGTCTGAGCTTGAGCAGCTCGATCCACGCGGCGCAGGGCCATGCACGGCGGCGCAGCATC 131 || || || || ||| | |||||| || || | |||||||| || || ||||||||| Sbjct 112 CGAGCGAACTCGAACAG-TTGATCCATGCCGCAGAAGGCCATGCGCGACGCCGCAGCATC 54 Query 132 GGCGAGGTGCT 142 ||||| || || Sbjct 53 GGCGAAGTACT 43 >seq2748290 Length=213 Score = 107 bits (118), Expect = 6e-21 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 483 GCCGGGGAAAAAGCCTTCTGCGCGGGCGGCGATATCCGTTCCTTGCATGACAGTTTCAAG 542 || || ||||||||||||||||| || ||||| |||||||| || | |||||||||||| Sbjct 213 GCTGGCGAAAAAGCCTTCTGCGCCGGGGGCGACATCCGTTCGCTGTACGACAGTTTCAAG 154 Query 543 AGCGGCGACACCCTGCACGAAGACTTCTTTGTCG 576 | |||||||| |||||||| ||||| ||||||| Sbjct 153 AACGGCGACAGCCTGCACGCCGACTTTTTTGTCG 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1687035200512