Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001228.1
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
seq284874 562 1e-157
seq3088368 401 2e-109
seq2967947 354 3e-95
seq336205 338 2e-90
seq2331719 196 2e-47
seq3058156 185 3e-44
seq296765 176 2e-41
seq2890769 125 2e-26
seq2748290 107 6e-21
>seq284874
Length=7235
Score = 562 bits (622), Expect = 1e-157
Identities = 473/582 (81%), Gaps = 18/582 (3%)
Strand=Plus/Plus
Query 12 TCACGGCGGCCGACCTGAAGCTGGCCCTGGCCGAGATGGAGCAGTTCTACGACGTGCAAC 71
|||||||||||||| |||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 3921 TCACGGCGGCCGACTTGAAGCTGGCGCTGGCCGAGATGGAGCAGTTTTACGATGTGCAAC 3980
Query 72 CGTCTGAGCTTGAGCAGCTCGATCCACGCGGCGCAGGGCCATGCACGGCGGCGCAGCATC 131
|| ||||| || ||| | |||||| || || | ||||| ||| | || |||||||||
Sbjct 3981 CGAGCGAGCTCGAACAGTT-GATCCATGCCGCAGAAGGCCACGCAAGACGCCGCAGCATC 4039
Query 132 GGCGAGGTGCT---CAGTCGC--------------CGTGCATAAATGCAATAACGACCTG 174
||||| || || | ||||| ||||||||||||||| |||||||||
Sbjct 4040 GGCGAAGTACTGGCCCGTCGCGCCGCCTGAGCCTGCGTGCATAAATGCAAAAACGACCTG 4099
Query 175 CAGGATTCCCCGGTGTACTGGGCAAATGTGCACTGGTAGGATCGCAAGAAGGTTCGTCCC 234
|| |||||| | |||||||||||||| |||||||||| |||||| ||| |||| |||
Sbjct 4100 CATGATTCCGGGTTGTACTGGGCAAATTTGCACTGGTACGATCGCGAGATAGTTCCTCCG 4159
Query 235 CGAACATCTTGATAAAGAACAATAAAAGCAGGGAGTTAGCGATGACTGCTCAGGTTTCAT 294
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 4160 CGAACATCTTGATAAAGAACAATAAAAGCAGGGAGTTACAGATGACTGCTCAGGTTTCAT 4219
Query 295 CCGAGGCAAGCCACACCGACCATCTTCAAGCCGACATACTCGCCGAAGTCCGCAACCATA 354
|||| ||||||| | |||| |||||| | ||| | || ||||| || |||||||| |
Sbjct 4220 CCGAAGCAAGCCGCGCCGAAATTCTTCAGGACGAAGTGCTGGCCGACGTTCGCAACCACA 4279
Query 355 TCGGCCACCTCACCCTCAACCGCCCCGCCGGCCTGAACGCCATTACCCTGGACATGGTCC 414
| ||||||||||||||||| |||||||| ||| |||| ||||| |||||||||||||| |
Sbjct 4280 TTGGCCACCTCACCCTCAATCGCCCCGCTGGCTTGAATGCCATCACCCTGGACATGGTTC 4339
Query 415 GCAGCCTGAGCCACCACCTGCAGGCCTGGGCCGACGATCCCACGGTGTATGCCGTGGTCC 474
||||||||| || | ||||||||||| || || || ||| || |||||||| |
Sbjct 4340 GCAGCCTGACGGCGCAGTTACAGGCCTGGGCGGATGACCCGCAGGTCTACGCCGTGGTGC 4399
Query 475 TGCGCGGCGCCGGGGAAAAAGCCTTCTGCGCGGGCGGCGATATCCGTTCCTTGCATGACA 534
|||||||||| || ||||||||||| ||||| || ||||| |||||||| || | ||||
Sbjct 4400 TGCGCGGCGCTGGCGAAAAAGCCTTTTGCGCCGGTGGCGACATCCGTTCGCTGTACGACA 4459
Query 535 GTTTCAAGAGCGGCGACACCCTGCACGAAGACTTCTTTGTCG 576
| ||||||| |||||||| |||||||| |||||||| ||||
Sbjct 4460 GCTTCAAGAACGGCGACAGCCTGCACGCCGACTTCTTCGTCG 4501
>seq3088368
Length=10301
Score = 401 bits (444), Expect = 2e-109
Identities = 349/428 (82%), Gaps = 4/428 (1%)
Strand=Plus/Minus
Query 149 CCGTGCATAAATGCAATAACGACCTGCAGGATTCCCCGGTGTACTGGGCAAATGTGCACT 208
|||||||||||||||| ||||||||||| |||||| | ||||| ||||||| ||| ||
Sbjct 2257 CCGTGCATAAATGCAACAACGACCTGCATGATTCCGGGTTGTACGCGGCAAATTTGCGCT 2198
Query 209 GGTAGGATCGCAAGAAGGTTCGTCCCCGAACATCTTGATAAAGAACAATAAAAGCAGGGA 268
|||| |||| || |||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 2197 GGTACGATCAGGCGATGGTTCGCCCCCGAACATTTTGATAAAGAACAATAAAAGCAGGGA 2138
Query 269 GTTAGCGATGACTGCTCAGGTTTCATCCGAGGCAAGCCACACCGACCATCTTCAAGCCG- 327
||||| ||||||||||||||| || |||| |||||||||||||| || | ||| |
Sbjct 2137 GTTAGTGATGACTGCTCAGGTGTCCCCCGAAGCAAGCCACACCGATAGTCAGC-AGCAGC 2079
Query 328 ACATACTCGCCGAAGTCCGCAACCATATCGGCCACCTCACCCTCAACCGCCCCGCCGGCC 387
| |||| || || || ||||||||||| |||||||||||||||||||||||||
Sbjct 2078 AAGTACTGAGTGAGGTGCGTAACCATATCGGTTACCTCACCCTCAACCGCCCCGCCGGTT 2019
Query 388 TGAACGCCATTACCCTGGACATGGTCCGCAGCCTGAGCCAC-CACCTGCAGGCCTGGGCC 446
|||| ||||| |||||||||||||| || | ||| | || | || ||||||||||||
Sbjct 2018 TGAATGCCATCACCCTGGACATGGTGCGGCGGATGA-CAACGCGGCTACAGGCCTGGGCC 1960
Query 447 GACGATCCCACGGTGTATGCCGTGGTCCTGCGCGGCGCCGGGGAAAAAGCCTTCTGCGCG 506
| || || ||| || ||||| || ||||||||| |||| || || |||||||||||
Sbjct 1959 GCTGACCCGCTGGTCTACGCCGTTGTGCTGCGCGGCTCCGGCGACAAGGCCTTCTGCGCC 1900
Query 507 GGCGGCGATATCCGTTCCTTGCATGACAGTTTCAAGAGCGGCGACACCCTGCACGAAGAC 566
|||||||||||||||||| || | ||||| |||||| | |||||||||||||| ||||||
Sbjct 1899 GGCGGCGATATCCGTTCCCTGTACGACAGCTTCAAGGGTGGCGACACCCTGCATGAAGAC 1840
Query 567 TTCTTTGT 574
||||| ||
Sbjct 1839 TTCTTCGT 1832
Score = 102 bits (112), Expect = 3e-19
Identities = 115/152 (76%), Gaps = 4/152 (3%)
Strand=Plus/Minus
Query 1 CGACCCCGAGGTCACGGCGGCCGACCTGAAGCTGGCCCTGGCCGAGATGGAGCAGTTCTA 60
|||||| | |||| ||||||||||| |||||||| ||||||| |||||||||||||
Sbjct 6778 CGACCCGGCCATCACTGCGGCCGACCTCAAGCTGGCGTTGGCCGATATGGAGCAGTTCTT 6719
Query 61 CGACGTGCAACCGTCTGAGCTTGAGCAGCTCGATCCACGCGGCGCAGGGCCATGCACGGC 120
||||| | || | | ||| ||| | | ||| ||| | || | ||||| || || |
Sbjct 6718 TGACGTCGAGCCCACGGCGCTGGAGGA-ATTGATTCACTCCGCCGAAGGCCACGCGCGAC 6660
Query 121 GGCGCAGCATCGGCGAGGTGCT---CAGTCGC 149
| ||||||||||||||||| || |||||||
Sbjct 6659 GCCGCAGCATCGGCGAGGTCCTGGCCAGTCGC 6628
>seq2967947
Length=507
Score = 354 bits (392), Expect = 3e-95
Identities = 280/333 (84%), Gaps = 2/333 (1%)
Strand=Plus/Minus
Query 245 GATAAAGAACAATAAAAGCAGGGAGTTAGCGATGACTGCTCAGGTTTCATCCGAGGCAAG 304
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 507 GATAAAGAACAATAAAAGCAGGGAGTTAGTGATGACTGCTCAGGTTTCATCCGAAGCAAG 448
Query 305 CCACACCGACCATCTTCAAGCCGACATACTCGCCGAAGTCCGCAACCATATCGGCCACCT 364
||| || |||||||| ||| |||| || |||||||| |||||||||||||||||
Sbjct 447 CCAGGCCAGAATTCTTCAAGACGAGGTACTGGCTGAAGTCCGTAACCATATCGGCCACCT 388
Query 365 CACCCTCAACCGCCCCGCCGGCCTGAACGCCATTACCCTGGACATGGTCCGCAGCCTGAG 424
|||||| |||||||||||||| |||| ||||| |||||||||||||||||||| ||||
Sbjct 387 CACCCTTAACCGCCCCGCCGGTTTGAATGCCATCACCCTGGACATGGTCCGCAGTCTGA- 329
Query 425 CCAC-CACCTGCAGGCCTGGGCCGACGATCCCACGGTGTATGCCGTGGTCCTGCGCGGCG 483
|||| || ||||| ||||||| || || || ||||||||| |||||||||||||| |
Sbjct 328 CCACGCAGTTGCAGACCTGGGCGGATGACCCGCAGGTGTATGCGGTGGTCCTGCGCGGTG 269
Query 484 CCGGGGAAAAAGCCTTCTGCGCGGGCGGCGATATCCGTTCCTTGCATGACAGTTTCAAGA 543
|||| || || || |||||||||||||||||||| || ||| | | ||||| ||||||
Sbjct 268 CCGGTGACAAGGCGTTCTGCGCGGGCGGCGATATTCGCTCCCTCTACGACAGCTTCAAGC 209
Query 544 GCGGCGACACCCTGCACGAAGACTTCTTTGTCG 576
||||||| ||||||| | || ||||| ||||
Sbjct 208 AGGGCGACAGCCTGCACCAGGATTTCTTCGTCG 176
>seq336205
Length=2477
Score = 338 bits (374), Expect = 2e-90
Identities = 274/332 (83%), Gaps = 0/332 (0%)
Strand=Plus/Minus
Query 245 GATAAAGAACAATAAAAGCAGGGAGTTAGCGATGACTGCTCAGGTTTCATCCGAGGCAAG 304
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 2477 GATAAAGAACAATAAAAGCAGGGAGTTAGTGATGACTGCTCAGGTTTCATCCGAAGCAAG 2418
Query 305 CCACACCGACCATCTTCAAGCCGACATACTCGCCGAAGTCCGCAACCATATCGGCCACCT 364
|||| || |||||| | ||| |||| ||||| || || |||||||| ||||||||
Sbjct 2417 CCACGCCAGGATTCTTCAGGACGAGGTACTGGCCGACGTTCGTAACCATATTGGCCACCT 2358
Query 365 CACCCTCAACCGCCCCGCCGGCCTGAACGCCATTACCCTGGACATGGTCCGCAGCCTGAG 424
|||||||||||||||||||||| |||| ||||| |||||||| |||||||| ||| |||
Sbjct 2357 CACCCTCAACCGCCCCGCCGGCTTGAATGCCATCACCCTGGAGATGGTCCGTAGCTTGAC 2298
Query 425 CCACCACCTGCAGGCCTGGGCCGACGATCCCACGGTGTATGCCGTGGTCCTGCGCGGCGC 484
| || ||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct 2297 CGCGCAGTTGCAGGCCTGGGCAGATGACCCGCAGGTGTATGCCGTGGTCCTGCGCGGCGC 2238
Query 485 CGGGGAAAAAGCCTTCTGCGCGGGCGGCGATATCCGTTCCTTGCATGACAGTTTCAAGAG 544
||| ||||| || || ||||| || ||||| || ||||| | | ||||| ||||||
Sbjct 2237 CGGTGAAAAGGCTTTTTGCGCCGGTGGCGACATTCGTTCTCTCTACGACAGCTTCAAGCA 2178
Query 545 CGGCGACACCCTGCACGAAGACTTCTTTGTCG 576
||||||| |||||| | ||||| || ||||
Sbjct 2177 GGGCGACAGCCTGCATCAGGACTTTTTCGTCG 2146
>seq2331719
Length=141
Score = 196 bits (216), Expect = 2e-47
Identities = 128/141 (91%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 167 ACGACCTGCAGGATTCCCCGGTGTACTGGGCAAATGTGCACTGGTAGGATCGCAAGAAGG 226
|||||||||| |||||| | |||||||||||||| |||||||||| |||||| ||| |
Sbjct 141 ACGACCTGCATGATTCCGGGTTGTACTGGGCAAATTTGCACTGGTACGATCGCGAGATAG 82
Query 227 TTCGTCCCCGAACATCTTGATAAAGAACAATAAAAGCAGGGAGTTAGCGATGACTGCTCA 286
||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 81 TTCGTGCGCGAACATCTTGATAAAGAACAATAAAAGCAGGGAGTTAGTGATGACTGCTCA 22
Query 287 GGTTTCATCCGAGGCAAGCCA 307
|||||||||||| ||||||||
Sbjct 21 GGTTTCATCCGAAGCAAGCCA 1
>seq3058156
Length=1293
Score = 185 bits (204), Expect = 3e-44
Identities = 159/196 (81%), Gaps = 7/196 (4%)
Strand=Plus/Plus
Query 12 TCACGGCGGCCGACCTGAAGCTGGCCCTGGCCGAGATGGAGCAGTTCTACGACGTGCAAC 71
||||||| ||||| |||||||||||||||||||| ||||||||||||| || ||| | |
Sbjct 1097 TCACGGCAGCCGATCTGAAGCTGGCCCTGGCCGACATGGAGCAGTTCTTTGATGTGGAGC 1156
Query 72 CGTCTGAGCTTGAGCAGCTCGATCCACGCGGCGCAGGGCCATGCACGGCGGCGCAGCATC 131
| | ||||| ||||| | ||||||||| ||| | |||||||| ||||| |||||||||
Sbjct 1157 CCACCGAGCTGGAGCA-ATTGATCCACGCAGCGGAAGGCCATGCCCGGCGCCGCAGCATC 1215
Query 132 GGCGAGGTGCTCAGTCGCCG------TGCATAAATGCAATAACGACCTGCAGGATTCCCC 185
| || ||||| || |||| ||||||||||||| ||||||||||| ||||||
Sbjct 1216 GCTGAAGTGCTGGGTAGCCGCAGCGCTGCATAAATGCAAAAACGACCTGCATGATTCCGG 1275
Query 186 GGTGTACTGGGCAAAT 201
| ||||||||||||||
Sbjct 1276 GTTGTACTGGGCAAAT 1291
>seq296765
Length=4350
Score = 176 bits (194), Expect = 2e-41
Identities = 157/194 (81%), Gaps = 7/194 (4%)
Strand=Plus/Plus
Query 14 ACGGCGGCCGACCTGAAGCTGGCCCTGGCCGAGATGGAGCAGTTCTACGACGTGCAACCG 73
|| || ||||||||||||||||| |||||||| ||||| ||||||| || ||| | |||
Sbjct 4156 ACCGCCGCCGACCTGAAGCTGGCTCTGGCCGACATGGAACAGTTCTTTGATGTGGAGCCG 4215
Query 74 TCTGAGCTTGAGCAGCTCGATCCACGCGGCGCAGGGCCATGCACGGCGGCGCAGCATCGG 133
| ||||| || ||| | |||||||||||| | ||||| || || || |||||||||||
Sbjct 4216 ACAGAGCTGGAACAG-TTGATCCACGCGGCAGAAGGCCACGCCCGACGCCGCAGCATCGG 4274
Query 134 CGAGGTGCT---CAGTCGCCG---TGCATAAATGCAATAACGACCTGCAGGATTCCCCGG 187
||| ||||| ||| ||| | ||||||||||||| ||||||||||| |||||| |
Sbjct 4275 CGAAGTGCTGGGCAGCCGCAGCGCTGCATAAATGCAAAAACGACCTGCATGATTCCGGGT 4334
Query 188 TGTACTGGGCAAAT 201
||||||||||||||
Sbjct 4335 TGTACTGGGCAAAT 4348
>seq2890769
Length=317
Score = 125 bits (138), Expect = 2e-26
Identities = 107/131 (82%), Gaps = 1/131 (1%)
Strand=Plus/Minus
Query 12 TCACGGCGGCCGACCTGAAGCTGGCCCTGGCCGAGATGGAGCAGTTCTACGACGTGCAAC 71
|||||||||||||| |||| | ||| |||||||||||||||||||| ||||| |||||||
Sbjct 172 TCACGGCGGCCGACTTGAAACGGGCGCTGGCCGAGATGGAGCAGTTTTACGATGTGCAAC 113
Query 72 CGTCTGAGCTTGAGCAGCTCGATCCACGCGGCGCAGGGCCATGCACGGCGGCGCAGCATC 131
|| || || || ||| | |||||| || || | |||||||| || || |||||||||
Sbjct 112 CGAGCGAACTCGAACAG-TTGATCCATGCCGCAGAAGGCCATGCGCGACGCCGCAGCATC 54
Query 132 GGCGAGGTGCT 142
||||| || ||
Sbjct 53 GGCGAAGTACT 43
>seq2748290
Length=213
Score = 107 bits (118), Expect = 6e-21
Identities = 80/94 (85%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 483 GCCGGGGAAAAAGCCTTCTGCGCGGGCGGCGATATCCGTTCCTTGCATGACAGTTTCAAG 542
|| || ||||||||||||||||| || ||||| |||||||| || | ||||||||||||
Sbjct 213 GCTGGCGAAAAAGCCTTCTGCGCCGGGGGCGACATCCGTTCGCTGTACGACAGTTTCAAG 154
Query 543 AGCGGCGACACCCTGCACGAAGACTTCTTTGTCG 576
| |||||||| |||||||| ||||| |||||||
Sbjct 153 AACGGCGACAGCCTGCACGCCGACTTTTTTGTCG 120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1687035200512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |