Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001250.1 Length=167 Score E Sequences producing significant alignments: (Bits) Value seq3048300 194 1e-47 seq3001520 194 1e-47 seq2937466 183 3e-44 seq209872 170 2e-40 seq2970794 156 4e-36 seq2640957 102 7e-20 seq750393 84.2 2e-14 seq1844545 78.8 8e-13 >seq3048300 Length=1119 Score = 194 bits (214), Expect = 1e-47 Identities = 144/163 (88%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 5 CCCTAACCTGTGCACCCAGTGCGTCGGTCACTACGACGAACCGCAGAGCCAGCAGGTATC 64 ||| ||||||||||||||||| ||||| |||||||| ||||| ||| |||||||||| | Sbjct 1 CCCCAACCTGTGCACCCAGTGTGTCGGCCACTACGATGAACCCCAGTGCCAGCAGGTGT- 59 Query 65 GCCCGGTGGATTCGCATTTCCGCTGGACGAGGCACACCCCGAGACGGAAGAGCAGTTTGA 124 |||||||||||| ||| |||||||||| |||||||| |||||||| ||||||||| ||| Sbjct 60 GCCCGGTGGATT-GCA-TTCCGCTGGATGAGGCACATCCCGAGACTGAAGAGCAG-TTGC 116 Query 125 TGGAGAAGTACCGCAAGATTACCGGTAAGGCCTAAGCCTCTTC 167 ||||||||||||||||||||||||| ||||||| || ||||| Sbjct 117 TGGAGAAGTACCGCAAGATTACCGGCAAGGCCTGAGGTTCTTC 159 >seq3001520 Length=672 Score = 194 bits (214), Expect = 1e-47 Identities = 145/165 (88%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 1 TCGACCCTAACCTGTGCACCCAGTGCGTCGGTCACTACGACGAACCGCAGAGCCAGCAGG 60 ||||||| |||||||||||||| || ||||| ||||||||||| || ||| ||||||| | Sbjct 634 TCGACCCCAACCTGTGCACCCAATGTGTCGGCCACTACGACGAGCCTCAGTGCCAGCAAG 575 Query 61 TATCGCCCGGTGGATTCGCATTTCCGCTGGACGAGGCACACCCCGAGACGGAAGAGCAGT 120 | | |||||||||||| ||| |||||||||| || |||||||| ||||| ||||||||| Sbjct 574 TGT-GCCCGGTGGATT-GCA-TTCCGCTGGATGAAGCACACCCTGAGACTGAAGAGCAG- 519 Query 121 TTGATGGAGAAGTACCGCAAGATTACCGGTAAGGCCTAAGCCTCT 165 ||||||||||||||||| ||||||||||||||||||| || |||| Sbjct 518 TTGATGGAGAAGTACCGGAAGATTACCGGTAAGGCCTGAGACTCT 474 >seq2937466 Length=409 Score = 183 bits (202), Expect = 3e-44 Identities = 144/167 (86%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 1 TCGACCCTAACCTGTGCACCCAGTGCGTCGGTCACTACGACGAACCGCAGAGCCAGCAGG 60 ||||||| |||||||||||||| |||||||| ||||||||||| || ||| ||||||| | Sbjct 39 TCGACCCCAACCTGTGCACCCAATGCGTCGGCCACTACGACGAGCCTCAGTGCCAGCAAG 98 Query 61 TATCGCCCGGTGGATTCGCATTTCCGCTGGACGAGGCACACCCCGAGACGGAAGAGCAGT 120 | | |||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||| Sbjct 99 TGT-GCCCGGTGGATT-GCA-TTCCGCTGGACGAGGCACACCCTGAGACTGAAGAGCAG- 154 Query 121 TTGATGGAGAAGTACCGCAAGATTACCGGTAAGGCCTAAGCCTCTTC 167 |||||| |||| || || ||||||||||||||||| || ||||| Sbjct 155 TTGATGAAGAAATATCGGTTGATTACCGGTAAGGCCTGAGGTTCTTC 201 >seq209872 Length=5508 Score = 170 bits (188), Expect = 2e-40 Identities = 131/149 (88%), Gaps = 5/149 (3%) Strand=Plus/Minus Query 14 GTGCACCCAGTGCGTCGGTCACTACGACGAACCGCAGAGCCAGCAGGTATCGCCCGGTGG 73 |||||||||||||||||| |||||||||||||| ||| ||||||| || | ||||||||| Sbjct 3503 GTGCACCCAGTGCGTCGGCCACTACGACGAACCTCAGTGCCAGCAAGTGT-GCCCGGTGG 3445 Query 74 ATTCGCATTTCCGCTGGACGAGGCACACCCCGAGACGGAAGAGCAGTTTGATGGAGAAGT 133 ||| ||| |||||||||| ||||||| || ||||||||||| ||| ||||||||||||| Sbjct 3444 ATT-GCA-TTCCGCTGGATGAGGCACGGCCTGAGACGGAAGAACAG-TTGATGGAGAAGT 3388 Query 134 ACCGCAAGATTACCGGTAAGGCCT-AAGC 161 |||| ||||||||||||||||| |||| Sbjct 3387 ACCGGCTGATTACCGGTAAGGCCTGAAGC 3359 >seq2970794 Length=518 Score = 156 bits (172), Expect = 4e-36 Identities = 124/144 (86%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 14 GTGCACCCAGTGCGTCGGTCACTACGACGAACCGCAGAGCCAGCAGGTATCGCCCGGTGG 73 |||||||||||||||||| |||||||||||||| ||| ||||||| || | ||||||||| Sbjct 1 GTGCACCCAGTGCGTCGGCCACTACGACGAACCTCAGTGCCAGCAAGTGT-GCCCGGTGG 59 Query 74 ATTCGCATTTCCGCTGGACGAGGCACACCCCGAGACGGAAGAGCAGTTTGATGGAGAAGT 133 ||| | | |||||||||| || || || || || |||||||||||| ||||||||||||| Sbjct 60 ATT-GTA-TTCCGCTGGATGAAGCCCATCCGGAAACGGAAGAGCAG-TTGATGGAGAAGT 116 Query 134 ACCGCAAGATTACCGGTAAGGCCT 157 |||| ||||||||| ||||||| Sbjct 117 ACCGGTTGATTACCGGCAAGGCCT 140 >seq2640957 Length=186 Score = 102 bits (112), Expect = 7e-20 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 1 TCGACCCTAACCTGTGCACCCAGTGCGTCGGTCACTACGACGAACCGCAGAGCCAGCAGG 60 ||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||| | Sbjct 111 TCGACCCCAACCTGTGCACCCAGTGCGTCGGCCACTACGACGAACCTCAGTGCCAGCAAG 170 Query 61 TATCGCCCGGTGGATT 76 | | |||||||||||| Sbjct 171 TGT-GCCCGGTGGATT 185 >seq750393 Length=108 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 1 TCGACCCTAACCTGTGCACCCAGTGCGTCGGTCACTACGACGAACCGCAGAGCCAGCAGG 60 ||||||| ||||||||||||||||| ||||| |||||||| ||||| ||| ||||||||| Sbjct 67 TCGACCCCAACCTGTGCACCCAGTGTGTCGGCCACTACGATGAACCCCAGTGCCAGCAGG 8 Query 61 T 61 | Sbjct 7 T 7 >seq1844545 Length=127 Score = 78.8 bits (86), Expect = 8e-13 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 1 TCGACCCTAACCTGTGCACCCAGTGCGTCGGTCACTACGACGAACCGCAGAGCCAGCAGG 60 ||| ||| ||||||||||||||||| ||||| |||||||| ||||| ||| ||||||||| Sbjct 67 TCGGCCCCAACCTGTGCACCCAGTGTGTCGGCCACTACGATGAACCCCAGTGCCAGCAGG 8 Query 61 T 61 | Sbjct 7 T 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422178837624