Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001262.1
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
seq2973490 318 7e-85
seq2937901 304 2e-80
seq284036 288 1e-75
seq2946993 237 2e-60
seq2807641 235 7e-60
seq2309802 167 3e-39
>seq2973490
Length=529
Score = 318 bits (352), Expect = 7e-85
Identities = 203/214 (95%), Gaps = 5/214 (2%)
Strand=Plus/Minus
Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 506 TCGAGATC-AGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCC-AATGGCGTC 449
Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143
||| ||||||||||||||| |||||||| | |||||| ||||||| ||||||||||||||
Sbjct 448 TTT-GCCGGCCAGGGTGAAGCCCAGCACTT-GCGCCT-GGATCGGTGTGCAGTACGGGAA 392
Query 144 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAAGCGGGT 203
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 391 GCCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGGTTGAAGTCGTGGAAGCGGGT 332
Query 204 CTTGCCTTCCTGGGGCTCGACGACGAAGTCTTCG 237
||||||||||||||||||||||||||||||||||
Sbjct 331 CTTGCCTTCCTGGGGCTCGACGACGAAGTCTTCG 298
>seq2937901
Length=411
Score = 304 bits (336), Expect = 2e-80
Identities = 199/213 (93%), Gaps = 5/213 (2%)
Strand=Plus/Plus
Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83
|||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||||
Sbjct 117 TCGAGATC-AGGAACGCGGCGGTTTTGCCGGTGCCGGTCTGCGCGCGGCCGA-TGGCGTC 174
Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143
||| |||||| ||||||||||||||||| | | |||| ||||||||||||||||||||||
Sbjct 175 TTT-GCCGGCGAGGGTGAAACCCAGCACTTGG-GCCT-GGATCGGCGTGCAGTACGGGAA 231
Query 144 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAAGCGGGT 203
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 232 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGAGCCAGTTTGAAATCGTGGAAGCGGGT 291
Query 204 CTTGCCTTCCTGGGGCTCGACGACGAAGTCTTC 236
||||||||||| || |||||||||||||||||
Sbjct 292 TTTGCCTTCCTGCGGTTCGACGACGAAGTCTTC 324
>seq284036
Length=1501
Score = 288 bits (318), Expect = 1e-75
Identities = 196/214 (92%), Gaps = 5/214 (2%)
Strand=Plus/Plus
Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83
|||||||| || |||||||||||||||||||| |||||||| |||||||| |||||| ||
Sbjct 301 TCGAGATCAAG-AACGCGGCGGTCTTGCCGGTACCGGTCTGCGCGCGGCC-AATGGCATC 358
Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143
||| |||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct 359 TTT-GCCGGCGAGGGTGAAGCCCAGCACCT-GCGCCT-GGATCGGCGTGCAGTACGGGAA 415
Query 144 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAAGCGGGT 203
||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 416 GCCCAGGTCCTGGATGGCATGCATCAGTTCCGGGGCCAGTTTGAAGTCATGGAAGCGGGT 475
Query 204 CTTGCCTTCCTGGGGCTCGACGACGAAGTCTTCG 237
||||||||||||||| || || ||||||||||||
Sbjct 476 CTTGCCTTCCTGGGGTTCAACCACGAAGTCTTCG 509
>seq2946993
Length=436
Score = 237 bits (262), Expect = 2e-60
Identities = 151/160 (94%), Gaps = 3/160 (2%)
Strand=Plus/Minus
Query 78 GGCGTCTTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTA 137
||||||||| |||||| ||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 436 GGCGTCTTT-GCCGGCGAGGGTGAAACCCAGCACCT-GCGCCT-GGATCGGCGTGCAGTA 380
Query 138 CGGGAAACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAA 197
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 379 CGGGAAGCCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAGTCATGGAA 320
Query 198 GCGGGTCTTGCCTTCCTGGGGCTCGACGACGAAGTCTTCG 237
||||||||||||||||||||||||||| |||||||| |||
Sbjct 319 GCGGGTCTTGCCTTCCTGGGGCTCGACCACGAAGTCCTCG 280
>seq2807641
Length=239
Score = 235 bits (260), Expect = 7e-60
Identities = 150/159 (94%), Gaps = 3/159 (2%)
Strand=Plus/Minus
Query 78 GGCGTCTTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTA 137
||||||||| |||||| ||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 239 GGCGTCTTT-GCCGGCGAGGGTGAAACCCAGCACCT-GCGCCT-GGATCGGCGTGCAGTA 183
Query 138 CGGGAAACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAA 197
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 182 CGGGAACCCCAGGTCCTGAATGGCGTGCATCAGTTCCGGTGCCAGTTTGAAATCGTGGAA 123
Query 198 GCGGGTCTTGCCTTCCTGGGGCTCGACGACGAAGTCTTC 236
|||||| ||||||||||| ||||||||||||||||||||
Sbjct 122 GCGGGTTTTGCCTTCCTGTGGCTCGACGACGAAGTCTTC 84
>seq2309802
Length=138
Score = 167 bits (184), Expect = 3e-39
Identities = 113/120 (94%), Gaps = 5/120 (4%)
Strand=Plus/Plus
Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83
|||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 24 TCGAGATC-AGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGCGCGCGGCCG-ATGGCGTC 81
Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143
||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 82 -TTTGCCGGCGAGGGTGAAACCCAGCACCT-GCGCC-TGGATCGGCGTGCAGTACGGGAA 138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 639476768754
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |