Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001262.1 Length=237 Score E Sequences producing significant alignments: (Bits) Value seq2973490 318 7e-85 seq2937901 304 2e-80 seq284036 288 1e-75 seq2946993 237 2e-60 seq2807641 235 7e-60 seq2309802 167 3e-39 >seq2973490 Length=529 Score = 318 bits (352), Expect = 7e-85 Identities = 203/214 (95%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 506 TCGAGATC-AGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCC-AATGGCGTC 449 Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143 ||| ||||||||||||||| |||||||| | |||||| ||||||| |||||||||||||| Sbjct 448 TTT-GCCGGCCAGGGTGAAGCCCAGCACTT-GCGCCT-GGATCGGTGTGCAGTACGGGAA 392 Query 144 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAAGCGGGT 203 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 391 GCCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGGTTGAAGTCGTGGAAGCGGGT 332 Query 204 CTTGCCTTCCTGGGGCTCGACGACGAAGTCTTCG 237 |||||||||||||||||||||||||||||||||| Sbjct 331 CTTGCCTTCCTGGGGCTCGACGACGAAGTCTTCG 298 >seq2937901 Length=411 Score = 304 bits (336), Expect = 2e-80 Identities = 199/213 (93%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83 |||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||| Sbjct 117 TCGAGATC-AGGAACGCGGCGGTTTTGCCGGTGCCGGTCTGCGCGCGGCCGA-TGGCGTC 174 Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143 ||| |||||| ||||||||||||||||| | | |||| |||||||||||||||||||||| Sbjct 175 TTT-GCCGGCGAGGGTGAAACCCAGCACTTGG-GCCT-GGATCGGCGTGCAGTACGGGAA 231 Query 144 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAAGCGGGT 203 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 232 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGAGCCAGTTTGAAATCGTGGAAGCGGGT 291 Query 204 CTTGCCTTCCTGGGGCTCGACGACGAAGTCTTC 236 ||||||||||| || ||||||||||||||||| Sbjct 292 TTTGCCTTCCTGCGGTTCGACGACGAAGTCTTC 324 >seq284036 Length=1501 Score = 288 bits (318), Expect = 1e-75 Identities = 196/214 (92%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83 |||||||| || |||||||||||||||||||| |||||||| |||||||| |||||| || Sbjct 301 TCGAGATCAAG-AACGCGGCGGTCTTGCCGGTACCGGTCTGCGCGCGGCC-AATGGCATC 358 Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143 ||| |||||| |||||||| |||||||||| |||||| |||||||||||||||||||||| Sbjct 359 TTT-GCCGGCGAGGGTGAAGCCCAGCACCT-GCGCCT-GGATCGGCGTGCAGTACGGGAA 415 Query 144 ACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAAGCGGGT 203 ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| Sbjct 416 GCCCAGGTCCTGGATGGCATGCATCAGTTCCGGGGCCAGTTTGAAGTCATGGAAGCGGGT 475 Query 204 CTTGCCTTCCTGGGGCTCGACGACGAAGTCTTCG 237 ||||||||||||||| || || |||||||||||| Sbjct 476 CTTGCCTTCCTGGGGTTCAACCACGAAGTCTTCG 509 >seq2946993 Length=436 Score = 237 bits (262), Expect = 2e-60 Identities = 151/160 (94%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 78 GGCGTCTTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTA 137 ||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||||||| Sbjct 436 GGCGTCTTT-GCCGGCGAGGGTGAAACCCAGCACCT-GCGCCT-GGATCGGCGTGCAGTA 380 Query 138 CGGGAAACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAA 197 |||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 379 CGGGAAGCCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAGTCATGGAA 320 Query 198 GCGGGTCTTGCCTTCCTGGGGCTCGACGACGAAGTCTTCG 237 ||||||||||||||||||||||||||| |||||||| ||| Sbjct 319 GCGGGTCTTGCCTTCCTGGGGCTCGACCACGAAGTCCTCG 280 >seq2807641 Length=239 Score = 235 bits (260), Expect = 7e-60 Identities = 150/159 (94%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 78 GGCGTCTTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTA 137 ||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||||||| Sbjct 239 GGCGTCTTT-GCCGGCGAGGGTGAAACCCAGCACCT-GCGCCT-GGATCGGCGTGCAGTA 183 Query 138 CGGGAAACCCAGGTCCTGGATGGCGTGCATCAGTTCCGGGGCCAGTTTGAAATCGTGGAA 197 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 182 CGGGAACCCCAGGTCCTGAATGGCGTGCATCAGTTCCGGTGCCAGTTTGAAATCGTGGAA 123 Query 198 GCGGGTCTTGCCTTCCTGGGGCTCGACGACGAAGTCTTC 236 |||||| ||||||||||| |||||||||||||||||||| Sbjct 122 GCGGGTTTTGCCTTCCTGTGGCTCGACGACGAAGTCTTC 84 >seq2309802 Length=138 Score = 167 bits (184), Expect = 3e-39 Identities = 113/120 (94%), Gaps = 5/120 (4%) Strand=Plus/Plus Query 24 TCGAGATCCAGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGGGCGCGGCCGAATGGCGTC 83 |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 24 TCGAGATC-AGGAACGCGGCGGTCTTGCCGGTGCCGGTCTGCGCGCGGCCG-ATGGCGTC 81 Query 84 TTTTGCCGGCCAGGGTGAAACCCAGCACCTAGCGCCTTGGATCGGCGTGCAGTACGGGAA 143 ||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 82 -TTTGCCGGCGAGGGTGAAACCCAGCACCT-GCGCC-TGGATCGGCGTGCAGTACGGGAA 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 639476768754