Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001277.1
Length=476
Score E
Sequences producing significant alignments: (Bits) Value
seq284193 571 2e-160
seq108525 571 2e-160
seq3081566 556 4e-156
seq3064987 526 6e-147
>seq284193
Length=2300
Score = 571 bits (632), Expect = 2e-160
Identities = 411/474 (87%), Gaps = 0/474 (0%)
Strand=Plus/Minus
Query 1 CGACCCGCTGCAAGACGGCACCGACCTGCTGTTTCGCATCGGCGTGCTGAACGATTCCGG 60
|||||| |||||||||||||||||| |||||||||| ||||||||||| |||||||||||
Sbjct 1055 CGACCCACTGCAAGACGGCACCGACTTGCTGTTTCGTATCGGCGTGCTCAACGATTCCGG 996
Query 61 CATGCAAGCGCGAATCTTCGCCCCGCAGCGCCTCCGCCTTGCGGCCAGCCCCGGCTACCT 120
|||||| || || |||||||| ||||||||| | ||| | || |||||||| | ||||||
Sbjct 995 CATGCAGGCCCGCATCTTCGCGCCGCAGCGCTTTCGCATCGCCGCCAGCCCTGCCTACCT 936
Query 121 GGAACGTTTCGGTACGCCGCGCCATCCGGACGAACTGGTGAACCACCAGTGCCTGGCCTA 180
|| || || || |||||||| || ||||| ||||| ||||| ||||||||||||||
Sbjct 935 GGCCCGGCATGGCACACCGCGCCACCCCGACGAGCTGGTCAACCATCAGTGCCTGGCCTA 876
Query 181 CAAGGGTGTCACCGGCCAACAACGCTGGTTCTTCCGCCGCGACCAGGACGACTGGACGTC 240
|||||| |||||||||| ||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 875 CAAGGGCATCACCGGCCAGCAACGCTGGTTTTTCCGCCGCGACCAGGGCGATTGGACGTC 816
Query 241 CTACAGCGTCAAGGGCCCGATCACCGGCAACCACGCCGACACTCTGACCCACGCCGCCGA 300
|||||||||||| |||||||||||||||||||||||||| || || |||||||| |||||
Sbjct 815 CTACAGCGTCAAAGGCCCGATCACCGGCAACCACGCCGATACCCTCACCCACGCTGCCGA 756
Query 301 GCAAGGCCTGGGGCTGGTGGTGTTTCCATCTTGGTTGATCGGCGAAGGGCTGCGTGCCGG 360
|||||||||||||||||||||||||| || ||| ||||||||||||| |||| |||||
Sbjct 755 ACAAGGCCTGGGGCTGGTGGTGTTTCCGTCCTGGCTGATCGGCGAAGGCTTGCGCGCCGG 696
Query 361 CACGCTGCAGGCGGTGCTGACCGACTACGAAGTGGCGACGACCCTGGAGCCGCAACAGAT 420
||| ||||||||||||||||||| ||||| ||||||||||| || |||||||| |||||
Sbjct 695 CACCTTGCAGGCGGTGCTGACCGAATACGACGTGGCGACGACGCTTGAGCCGCAGCAGAT 636
Query 421 TGCGGCGCTGTGGCCGGGTAGTCGGCGGTTGTCGTTGAAGGTGCGGACGGTGAT 474
||| ||| | ||||| || || || ||| |||| ||||||||||| ||||||||
Sbjct 635 TGCCGCGTTATGGCCCGGCAGCCGCCGGCTGTCATTGAAGGTGCGCACGGTGAT 582
>seq108525
Length=7026
Score = 571 bits (632), Expect = 2e-160
Identities = 411/474 (87%), Gaps = 0/474 (0%)
Strand=Plus/Minus
Query 1 CGACCCGCTGCAAGACGGCACCGACCTGCTGTTTCGCATCGGCGTGCTGAACGATTCCGG 60
||||||||||||||| |||||||||||||||||||||||||||||||| || || ||| |
Sbjct 4788 CGACCCGCTGCAAGATGGCACCGACCTGCTGTTTCGCATCGGCGTGCTTAATGACTCCAG 4729
Query 61 CATGCAAGCGCGAATCTTCGCCCCGCAGCGCCTCCGCCTTGCGGCCAGCCCCGGCTACCT 120
|||||||||||| ||||||||||| ||||| | ||||| || |||||||||| ||||||
Sbjct 4728 CATGCAAGCGCGCATCTTCGCCCCCCAGCGTTTTCGCCTCGCCGCCAGCCCCGCCTACCT 4669
Query 121 GGAACGTTTCGGTACGCCGCGCCATCCGGACGAACTGGTGAACCACCAGTGCCTGGCCTA 180
|| || || ||||| ||||| || || ||||||| ||||| || |||||||||||
Sbjct 4668 GGCCCGACATGGCACGCCACGCCACCCCGAAGAACTGGCCAACCATCAATGCCTGGCCTA 4609
Query 181 CAAGGGTGTCACCGGCCAACAACGCTGGTTCTTCCGCCGCGACCAGGACGACTGGACGTC 240
||| || |||||||||| || ||||||||||| ||||||||||||| |||||||||| |
Sbjct 4608 CAAAGGCATCACCGGCCAGCAGCGCTGGTTCTTTCGCCGCGACCAGGGCGACTGGACGCC 4549
Query 241 CTACAGCGTCAAGGGCCCGATCACCGGCAACCACGCCGACACTCTGACCCACGCCGCCGA 300
|||||||||||| ||||||||||||||||||||||||||||| || ||||| || || ||
Sbjct 4548 CTACAGCGTCAAAGGCCCGATCACCGGCAACCACGCCGACACGCTCACCCATGCGGCGGA 4489
Query 301 GCAAGGCCTGGGGCTGGTGGTGTTTCCATCTTGGTTGATCGGCGAAGGGCTGCGTGCCGG 360
||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||
Sbjct 4488 GCAAGGCCTGGGGCTGGTGGTGTTTCCGTCCTGGCTGATCGGCGAAGGCTTGCGTGCCGG 4429
Query 361 CACGCTGCAGGCGGTGCTGACCGACTACGAAGTGGCGACGACCCTGGAGCCGCAACAGAT 420
||| |||||||||| || || || ||||| |||||||| || |||||||||||||||||
Sbjct 4428 CACCTTGCAGGCGGTACTCACGGAGTACGACGTGGCGACCACGCTGGAGCCGCAACAGAT 4369
Query 421 TGCGGCGCTGTGGCCGGGTAGTCGGCGGTTGTCGTTGAAGGTGCGGACGGTGAT 474
||||||| ||||||| || || |||||| ||||| |||||||||| ||||||||
Sbjct 4368 TGCGGCGTTGTGGCCAGGCAGCCGGCGGCTGTCGCTGAAGGTGCGCACGGTGAT 4315
>seq3081566
Length=2375
Score = 556 bits (616), Expect = 4e-156
Identities = 409/476 (86%), Gaps = 0/476 (0%)
Strand=Plus/Plus
Query 1 CGACCCGCTGCAAGACGGCACCGACCTGCTGTTTCGCATCGGCGTGCTGAACGATTCCGG 60
|||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 1039 CGACCCGCTGCAGGACGGCACCGACCTGCTGTTTCGCATCGGCGTACTCAACGATTCCAG 1098
Query 61 CATGCAAGCGCGAATCTTCGCCCCGCAGCGCCTCCGCCTTGCGGCCAGCCCCGGCTACCT 120
|||||| ||||| |||||||| ||||| ||| | ||||| || |||||||||| ||||||
Sbjct 1099 CATGCAGGCGCGGATCTTCGCACCGCAACGCTTTCGCCTCGCCGCCAGCCCCGCCTACCT 1158
Query 121 GGAACGTTTCGGTACGCCGCGCCATCCGGACGAACTGGTGAACCACCAGTGCCTGGCCTA 180
|| || |||||||||||| ||||| |||||||||| || ||||| |||||||||||
Sbjct 1159 GGCGCGGCACGGTACGCCGCGTCATCCCGACGAACTGGCCAATCACCAATGCCTGGCCTA 1218
Query 181 CAAGGGTGTCACCGGCCAACAACGCTGGTTCTTCCGCCGCGACCAGGACGACTGGACGTC 240
|||||| ||| ||||| | |||||||||||||| |||||||||| |||||||| |
Sbjct 1219 CAAGGGCATCAAAGGCCAGGAGCGCTGGTTCTTCCGTCGCGACCAGGGCGACTGGAACGC 1278
Query 241 CTACAGCGTCAAGGGCCCGATCACCGGCAACCACGCCGACACTCTGACCCACGCCGCCGA 300
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1279 CTACAGCGTCAAAGGCCCGATCACCGGCAACCACGCCGACACCCTGACCCACGCCGCCGA 1338
Query 301 GCAAGGCCTGGGGCTGGTGGTGTTTCCATCTTGGTTGATCGGCGAAGGGCTGCGTGCCGG 360
|| ||||||||||||||||||||||| || ||| ||||||||||||| ||||| |||||
Sbjct 1339 ACAGGGCCTGGGGCTGGTGGTGTTTCCGTCCTGGCTGATCGGCGAAGGCCTGCGCGCCGG 1398
Query 361 CACGCTGCAGGCGGTGCTGACCGACTACGAAGTGGCGACGACCCTGGAGCCGCAACAGAT 420
||| |||||||||||||||| || ||||| ||||| || ||||||||||| || || ||
Sbjct 1399 CACCTTGCAGGCGGTGCTGACGGAATACGAGGTGGCAACCACCCTGGAGCCCCAGCAAAT 1458
Query 421 TGCGGCGCTGTGGCCGGGTAGTCGGCGGTTGTCGTTGAAGGTGCGGACGGTGATCG 476
|| ||| | ||||| || || || || ||||| | |||||||||||||||||||
Sbjct 1459 CGCAGCGTTATGGCCAGGCAGCCGCAGGCTGTCGCTCAAGGTGCGGACGGTGATCG 1514
>seq3064987
Length=1453
Score = 526 bits (582), Expect = 6e-147
Identities = 401/474 (85%), Gaps = 0/474 (0%)
Strand=Plus/Plus
Query 1 CGACCCGCTGCAAGACGGCACCGACCTGCTGTTTCGCATCGGCGTGCTGAACGATTCCGG 60
||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| ||| |
Sbjct 57 CGACCCGTTGCAAGACGGTACCGACCTGCTGTTTCGCATCGGTGTGCTCAACGACTCCAG 116
Query 61 CATGCAAGCGCGAATCTTCGCCCCGCAGCGCCTCCGCCTTGCGGCCAGCCCCGGCTACCT 120
|||||| || || |||||||| || ||||| | ||||| || |||||||||| |||||
Sbjct 117 CATGCAGGCACGCATCTTCGCGCCCCAGCGTTTTCGCCTCGCCGCCAGCCCCGCGTACCT 176
Query 121 GGAACGTTTCGGTACGCCGCGCCATCCGGACGAACTGGTGAACCACCAGTGCCTGGCCTA 180
|| || | || |||||||| ||||| || ||||||| ||||| || |||||||||||
Sbjct 177 GGCCCGATATGGCACGCCGCGTCATCCCGATGAACTGGCCAACCATCAATGCCTGGCCTA 236
Query 181 CAAGGGTGTCACCGGCCAACAACGCTGGTTCTTCCGCCGCGACCAGGACGACTGGACGTC 240
||| || |||||||||| ||||||||||||||||| |||| ||||| |||||||||| |
Sbjct 237 CAAAGGCATCACCGGCCAGCAACGCTGGTTCTTCCGTCGCGGCCAGGGCGACTGGACGCC 296
Query 241 CTACAGCGTCAAGGGCCCGATCACCGGCAACCACGCCGACACTCTGACCCACGCCGCCGA 300
||||||||||| ||||| ||||||||||||||||||||||| || |||||||| || ||
Sbjct 297 GTACAGCGTCAAAGGCCCCATCACCGGCAACCACGCCGACACCCTCACCCACGCGGCGGA 356
Query 301 GCAAGGCCTGGGGCTGGTGGTGTTTCCATCTTGGTTGATCGGCGAAGGGCTGCGTGCCGG 360
|||||||||||| |||| ||||| || |||||| ||||||||||||| ||||||| ||
Sbjct 357 ACAAGGCCTGGGGTTGGTAGTGTTCCCCTCTTGGCTGATCGGCGAAGGCTTGCGTGCTGG 416
Query 361 CACGCTGCAGGCGGTGCTGACCGACTACGAAGTGGCGACGACCCTGGAGCCGCAACAGAT 420
||| |||| |||||||| || || ||||| ||||| || |||||||| |||||||||||
Sbjct 417 CACCTTGCAAGCGGTGCTTACGGAGTACGACGTGGCCACCACCCTGGAACCGCAACAGAT 476
Query 421 TGCGGCGCTGTGGCCGGGTAGTCGGCGGTTGTCGTTGAAGGTGCGGACGGTGAT 474
||||||| ||||||| || || |||||| ||||| ||||||| || ||||||||
Sbjct 477 TGCGGCGTTGTGGCCAGGCAGCCGGCGGCTGTCGCTGAAGGTACGCACGGTGAT 530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1376918435712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |