Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001277.1 Length=476 Score E Sequences producing significant alignments: (Bits) Value seq284193 571 2e-160 seq108525 571 2e-160 seq3081566 556 4e-156 seq3064987 526 6e-147 >seq284193 Length=2300 Score = 571 bits (632), Expect = 2e-160 Identities = 411/474 (87%), Gaps = 0/474 (0%) Strand=Plus/Minus Query 1 CGACCCGCTGCAAGACGGCACCGACCTGCTGTTTCGCATCGGCGTGCTGAACGATTCCGG 60 |||||| |||||||||||||||||| |||||||||| ||||||||||| ||||||||||| Sbjct 1055 CGACCCACTGCAAGACGGCACCGACTTGCTGTTTCGTATCGGCGTGCTCAACGATTCCGG 996 Query 61 CATGCAAGCGCGAATCTTCGCCCCGCAGCGCCTCCGCCTTGCGGCCAGCCCCGGCTACCT 120 |||||| || || |||||||| ||||||||| | ||| | || |||||||| | |||||| Sbjct 995 CATGCAGGCCCGCATCTTCGCGCCGCAGCGCTTTCGCATCGCCGCCAGCCCTGCCTACCT 936 Query 121 GGAACGTTTCGGTACGCCGCGCCATCCGGACGAACTGGTGAACCACCAGTGCCTGGCCTA 180 || || || || |||||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 935 GGCCCGGCATGGCACACCGCGCCACCCCGACGAGCTGGTCAACCATCAGTGCCTGGCCTA 876 Query 181 CAAGGGTGTCACCGGCCAACAACGCTGGTTCTTCCGCCGCGACCAGGACGACTGGACGTC 240 |||||| |||||||||| ||||||||||| |||||||||||||||| ||| |||||||| Sbjct 875 CAAGGGCATCACCGGCCAGCAACGCTGGTTTTTCCGCCGCGACCAGGGCGATTGGACGTC 816 Query 241 CTACAGCGTCAAGGGCCCGATCACCGGCAACCACGCCGACACTCTGACCCACGCCGCCGA 300 |||||||||||| |||||||||||||||||||||||||| || || |||||||| ||||| Sbjct 815 CTACAGCGTCAAAGGCCCGATCACCGGCAACCACGCCGATACCCTCACCCACGCTGCCGA 756 Query 301 GCAAGGCCTGGGGCTGGTGGTGTTTCCATCTTGGTTGATCGGCGAAGGGCTGCGTGCCGG 360 |||||||||||||||||||||||||| || ||| ||||||||||||| |||| ||||| Sbjct 755 ACAAGGCCTGGGGCTGGTGGTGTTTCCGTCCTGGCTGATCGGCGAAGGCTTGCGCGCCGG 696 Query 361 CACGCTGCAGGCGGTGCTGACCGACTACGAAGTGGCGACGACCCTGGAGCCGCAACAGAT 420 ||| ||||||||||||||||||| ||||| ||||||||||| || |||||||| ||||| Sbjct 695 CACCTTGCAGGCGGTGCTGACCGAATACGACGTGGCGACGACGCTTGAGCCGCAGCAGAT 636 Query 421 TGCGGCGCTGTGGCCGGGTAGTCGGCGGTTGTCGTTGAAGGTGCGGACGGTGAT 474 ||| ||| | ||||| || || || ||| |||| ||||||||||| |||||||| Sbjct 635 TGCCGCGTTATGGCCCGGCAGCCGCCGGCTGTCATTGAAGGTGCGCACGGTGAT 582 >seq108525 Length=7026 Score = 571 bits (632), Expect = 2e-160 Identities = 411/474 (87%), Gaps = 0/474 (0%) Strand=Plus/Minus Query 1 CGACCCGCTGCAAGACGGCACCGACCTGCTGTTTCGCATCGGCGTGCTGAACGATTCCGG 60 ||||||||||||||| |||||||||||||||||||||||||||||||| || || ||| | Sbjct 4788 CGACCCGCTGCAAGATGGCACCGACCTGCTGTTTCGCATCGGCGTGCTTAATGACTCCAG 4729 Query 61 CATGCAAGCGCGAATCTTCGCCCCGCAGCGCCTCCGCCTTGCGGCCAGCCCCGGCTACCT 120 |||||||||||| ||||||||||| ||||| | ||||| || |||||||||| |||||| Sbjct 4728 CATGCAAGCGCGCATCTTCGCCCCCCAGCGTTTTCGCCTCGCCGCCAGCCCCGCCTACCT 4669 Query 121 GGAACGTTTCGGTACGCCGCGCCATCCGGACGAACTGGTGAACCACCAGTGCCTGGCCTA 180 || || || ||||| ||||| || || ||||||| ||||| || ||||||||||| Sbjct 4668 GGCCCGACATGGCACGCCACGCCACCCCGAAGAACTGGCCAACCATCAATGCCTGGCCTA 4609 Query 181 CAAGGGTGTCACCGGCCAACAACGCTGGTTCTTCCGCCGCGACCAGGACGACTGGACGTC 240 ||| || |||||||||| || ||||||||||| ||||||||||||| |||||||||| | Sbjct 4608 CAAAGGCATCACCGGCCAGCAGCGCTGGTTCTTTCGCCGCGACCAGGGCGACTGGACGCC 4549 Query 241 CTACAGCGTCAAGGGCCCGATCACCGGCAACCACGCCGACACTCTGACCCACGCCGCCGA 300 |||||||||||| ||||||||||||||||||||||||||||| || ||||| || || || Sbjct 4548 CTACAGCGTCAAAGGCCCGATCACCGGCAACCACGCCGACACGCTCACCCATGCGGCGGA 4489 Query 301 GCAAGGCCTGGGGCTGGTGGTGTTTCCATCTTGGTTGATCGGCGAAGGGCTGCGTGCCGG 360 ||||||||||||||||||||||||||| || ||| ||||||||||||| |||||||||| Sbjct 4488 GCAAGGCCTGGGGCTGGTGGTGTTTCCGTCCTGGCTGATCGGCGAAGGCTTGCGTGCCGG 4429 Query 361 CACGCTGCAGGCGGTGCTGACCGACTACGAAGTGGCGACGACCCTGGAGCCGCAACAGAT 420 ||| |||||||||| || || || ||||| |||||||| || ||||||||||||||||| Sbjct 4428 CACCTTGCAGGCGGTACTCACGGAGTACGACGTGGCGACCACGCTGGAGCCGCAACAGAT 4369 Query 421 TGCGGCGCTGTGGCCGGGTAGTCGGCGGTTGTCGTTGAAGGTGCGGACGGTGAT 474 ||||||| ||||||| || || |||||| ||||| |||||||||| |||||||| Sbjct 4368 TGCGGCGTTGTGGCCAGGCAGCCGGCGGCTGTCGCTGAAGGTGCGCACGGTGAT 4315 >seq3081566 Length=2375 Score = 556 bits (616), Expect = 4e-156 Identities = 409/476 (86%), Gaps = 0/476 (0%) Strand=Plus/Plus Query 1 CGACCCGCTGCAAGACGGCACCGACCTGCTGTTTCGCATCGGCGTGCTGAACGATTCCGG 60 |||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| | Sbjct 1039 CGACCCGCTGCAGGACGGCACCGACCTGCTGTTTCGCATCGGCGTACTCAACGATTCCAG 1098 Query 61 CATGCAAGCGCGAATCTTCGCCCCGCAGCGCCTCCGCCTTGCGGCCAGCCCCGGCTACCT 120 |||||| ||||| |||||||| ||||| ||| | ||||| || |||||||||| |||||| Sbjct 1099 CATGCAGGCGCGGATCTTCGCACCGCAACGCTTTCGCCTCGCCGCCAGCCCCGCCTACCT 1158 Query 121 GGAACGTTTCGGTACGCCGCGCCATCCGGACGAACTGGTGAACCACCAGTGCCTGGCCTA 180 || || |||||||||||| ||||| |||||||||| || ||||| ||||||||||| Sbjct 1159 GGCGCGGCACGGTACGCCGCGTCATCCCGACGAACTGGCCAATCACCAATGCCTGGCCTA 1218 Query 181 CAAGGGTGTCACCGGCCAACAACGCTGGTTCTTCCGCCGCGACCAGGACGACTGGACGTC 240 |||||| ||| ||||| | |||||||||||||| |||||||||| |||||||| | Sbjct 1219 CAAGGGCATCAAAGGCCAGGAGCGCTGGTTCTTCCGTCGCGACCAGGGCGACTGGAACGC 1278 Query 241 CTACAGCGTCAAGGGCCCGATCACCGGCAACCACGCCGACACTCTGACCCACGCCGCCGA 300 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1279 CTACAGCGTCAAAGGCCCGATCACCGGCAACCACGCCGACACCCTGACCCACGCCGCCGA 1338 Query 301 GCAAGGCCTGGGGCTGGTGGTGTTTCCATCTTGGTTGATCGGCGAAGGGCTGCGTGCCGG 360 || ||||||||||||||||||||||| || ||| ||||||||||||| ||||| ||||| Sbjct 1339 ACAGGGCCTGGGGCTGGTGGTGTTTCCGTCCTGGCTGATCGGCGAAGGCCTGCGCGCCGG 1398 Query 361 CACGCTGCAGGCGGTGCTGACCGACTACGAAGTGGCGACGACCCTGGAGCCGCAACAGAT 420 ||| |||||||||||||||| || ||||| ||||| || ||||||||||| || || || Sbjct 1399 CACCTTGCAGGCGGTGCTGACGGAATACGAGGTGGCAACCACCCTGGAGCCCCAGCAAAT 1458 Query 421 TGCGGCGCTGTGGCCGGGTAGTCGGCGGTTGTCGTTGAAGGTGCGGACGGTGATCG 476 || ||| | ||||| || || || || ||||| | ||||||||||||||||||| Sbjct 1459 CGCAGCGTTATGGCCAGGCAGCCGCAGGCTGTCGCTCAAGGTGCGGACGGTGATCG 1514 >seq3064987 Length=1453 Score = 526 bits (582), Expect = 6e-147 Identities = 401/474 (85%), Gaps = 0/474 (0%) Strand=Plus/Plus Query 1 CGACCCGCTGCAAGACGGCACCGACCTGCTGTTTCGCATCGGCGTGCTGAACGATTCCGG 60 ||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| ||| | Sbjct 57 CGACCCGTTGCAAGACGGTACCGACCTGCTGTTTCGCATCGGTGTGCTCAACGACTCCAG 116 Query 61 CATGCAAGCGCGAATCTTCGCCCCGCAGCGCCTCCGCCTTGCGGCCAGCCCCGGCTACCT 120 |||||| || || |||||||| || ||||| | ||||| || |||||||||| ||||| Sbjct 117 CATGCAGGCACGCATCTTCGCGCCCCAGCGTTTTCGCCTCGCCGCCAGCCCCGCGTACCT 176 Query 121 GGAACGTTTCGGTACGCCGCGCCATCCGGACGAACTGGTGAACCACCAGTGCCTGGCCTA 180 || || | || |||||||| ||||| || ||||||| ||||| || ||||||||||| Sbjct 177 GGCCCGATATGGCACGCCGCGTCATCCCGATGAACTGGCCAACCATCAATGCCTGGCCTA 236 Query 181 CAAGGGTGTCACCGGCCAACAACGCTGGTTCTTCCGCCGCGACCAGGACGACTGGACGTC 240 ||| || |||||||||| ||||||||||||||||| |||| ||||| |||||||||| | Sbjct 237 CAAAGGCATCACCGGCCAGCAACGCTGGTTCTTCCGTCGCGGCCAGGGCGACTGGACGCC 296 Query 241 CTACAGCGTCAAGGGCCCGATCACCGGCAACCACGCCGACACTCTGACCCACGCCGCCGA 300 ||||||||||| ||||| ||||||||||||||||||||||| || |||||||| || || Sbjct 297 GTACAGCGTCAAAGGCCCCATCACCGGCAACCACGCCGACACCCTCACCCACGCGGCGGA 356 Query 301 GCAAGGCCTGGGGCTGGTGGTGTTTCCATCTTGGTTGATCGGCGAAGGGCTGCGTGCCGG 360 |||||||||||| |||| ||||| || |||||| ||||||||||||| ||||||| || Sbjct 357 ACAAGGCCTGGGGTTGGTAGTGTTCCCCTCTTGGCTGATCGGCGAAGGCTTGCGTGCTGG 416 Query 361 CACGCTGCAGGCGGTGCTGACCGACTACGAAGTGGCGACGACCCTGGAGCCGCAACAGAT 420 ||| |||| |||||||| || || ||||| ||||| || |||||||| ||||||||||| Sbjct 417 CACCTTGCAAGCGGTGCTTACGGAGTACGACGTGGCCACCACCCTGGAACCGCAACAGAT 476 Query 421 TGCGGCGCTGTGGCCGGGTAGTCGGCGGTTGTCGTTGAAGGTGCGGACGGTGAT 474 ||||||| ||||||| || || |||||| ||||| ||||||| || |||||||| Sbjct 477 TGCGGCGTTGTGGCCAGGCAGCCGGCGGCTGTCGCTGAAGGTACGCACGGTGAT 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1376918435712