Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001286.1
Length=411
Score E
Sequences producing significant alignments: (Bits) Value
seq65166 450 3e-124
seq2839651 403 4e-110
seq2851384 358 2e-96
seq2805409 309 7e-82
seq2876533 259 1e-66
seq170401 255 1e-65
seq1810009 212 1e-52
seq1469778 197 3e-48
seq1838091 185 2e-44
seq2932238 181 2e-43
seq707847 179 9e-43
seq426865 158 3e-36
seq3081341 145 2e-32
seq2694098 132 1e-28
>seq65166
Length=421
Score = 450 bits (498), Expect = 3e-124
Identities = 282/304 (93%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 108 CAGGTATTGCAGGTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCAT 167
|||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 1 CAGGTACTGCAGGTCGGAGCCGAAGAACATGTTCAGCGCGTCGGTCGGCGAGCAGATCAT 60
Query 168 CGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGCACTTC 227
|| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 TGCCTCGCCGCGACGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGTACTTC 120
Query 228 CAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGGGCGCG 287
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 121 CAGCTCTTTCATCATGTCGTAGTAACGCGGGTTGTATTCGCGCTTGAGCACCTGGGCACG 180
Query 288 GGAGGTGCCATCTTCATGGACCACTTCCGGCACGCGGGTCTTCCACTCTTCCGACACTTC 347
||| ||||| ||||| || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 181 GGAAGTGCCGTCTTCGTGCACCACTTCCGGCACACGGGTTTTCCATTCTTCCGACACTTC 240
Query 348 AAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATCTGCGGGGCCACGGT 407
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 241 AAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATCTGTGGCGCAACGGT 300
Query 408 GTCG 411
||||
Sbjct 301 GTCG 304
>seq2839651
Length=261
Score = 403 bits (446), Expect = 4e-110
Identities = 246/261 (94%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 124 GAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCCACGGCGG 183
||||| |||||||||| ||||||||| |||||||||||||||| ||||||||||| |||
Sbjct 1 GAGCCGAAGAACATGTTCAGCGCGTCGGTCGGCGAGCAGATCATTGCTTCGCCACGACGG 60
Query 184 TTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGCACTTCCAGCTCTTTCATCATG 243
||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||
Sbjct 61 TTGAGCGAGGTGTTCAGCGACACACCGTTGCCGGTGAGTACTTCCAGCTCTTTCATCATG 120
Query 244 TCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGGGCGCGGGAGGTGCCATCTTCA 303
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 121 TCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGGGCACGGGAAGTGCCATCTTCG 180
Query 304 TGGACCACTTCCGGCACGCGGGTCTTCCACTCTTCCGACACTTCAAAGGTGAAGGTCATG 363
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 181 TGGACCACTTCCGGCACGCGGGTTTTCCATTCTTCCGACACTTCAAAGGTGAAGGTCATG 240
Query 364 AACGGCGCCGGGTGATCGACC 384
|||||||||||||||||||||
Sbjct 241 AACGGCGCCGGGTGATCGACC 261
>seq2851384
Length=271
Score = 358 bits (396), Expect = 2e-96
Identities = 213/223 (96%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 189 CGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGCACTTCCAGCTCTTTCATCATGTCGTA 248
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 CGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGTACTTCCAGCTCTTTCATCATGTCGTA 60
Query 249 GTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGGGCGCGGGAGGTGCCATCTTCATGGAC 308
||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| || ||
Sbjct 61 GTAGCGCGGGTTGTACTCGCGCTTGAGTACCTGGGCACGGGAGGTGCCGTCTTCGTGCAC 120
Query 309 CACTTCCGGCACGCGGGTCTTCCACTCTTCCGACACTTCAAAGGTGAAGGTCATGAACGG 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CACTTCCGGCACGCGGGTCTTCCACTCTTCCGACACTTCAAAGGTGAAGGTCATGAACGG 180
Query 369 CGCCGGGTGATCGACCTTGATCATCTGCGGGGCCACGGTGTCG 411
|||||| || |||||||||||||| ||||||||||||||||||
Sbjct 181 CGCCGGATGGTCGACCTTGATCATTTGCGGGGCCACGGTGTCG 223
>seq2805409
Length=238
Score = 309 bits (342), Expect = 7e-82
Identities = 182/189 (96%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 223 ACTTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGG 282
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2 ACTTCCAGCTCTTTCATCATGTCGTAGTAACGCGGGTTGTATTCGCGCTTGAGCACCTGG 61
Query 283 GCGCGGGAGGTGCCATCTTCATGGACCACTTCCGGCACGCGGGTCTTCCACTCTTCCGAC 342
|||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 62 GCGCGGGAAGTGCCATCTTCATGGACCACTTCCGGTACGCGGGTTTTCCACTCTTCGGAC 121
Query 343 ACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATCTGCGGGGCC 402
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 122 ACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATCTGTGGCGCC 181
Query 403 ACGGTGTCG 411
|||||||||
Sbjct 182 ACGGTGTCG 190
>seq2876533
Length=298
Score = 259 bits (286), Expect = 1e-66
Identities = 160/171 (94%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 3 AGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGATCAGCCGAGCGTGTC 62
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 171 AGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGCTCAGCCGACCGAGTC 112
Query 63 ATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAGGTC 122
|||||||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||||
Sbjct 111 ATAAGGGTCCACGCCGTCTTTGACGACCAGGATGTCTTCCATGATCAAGTACTGCAGGTC 52
Query 123 GGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTC 173
|||||| |||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 51 GGAGCCGAAGAACATGTTCAGCGCGTCGGTCGGCGAGCAGATCATCGCTTC 1
>seq170401
Length=2055
Score = 255 bits (282), Expect = 1e-65
Identities = 156/166 (94%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 51 GCCGAGCGTGTCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAG 110
||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 166 GCCGACCGAGTCATAAGGGTCCACGCCGTCTTTGACGACCAGGATGTCTTCCATGATCAG 107
Query 111 GTATTGCAGGTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGC 170
|||||||||||||||||| |||||||||| ||||||||| | |||||||||||||||||
Sbjct 106 GTATTGCAGGTCGGAGCCGAAGAACATGTTCAGCGCGTCGGTTGGCGAGCAGATCATCGC 47
Query 171 TTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCG 216
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 46 TTCGCCACGGCGGTTGAGCGAGGTGTTCAGCGACACGCCGTTGCCG 1
Score = 75.2 bits (82), Expect = 3e-11
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Minus
Query 3 AGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCG 46
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 294 AGGAACGGCCCGTCATAGCCGTGACAGAACTGCAGGACGTGGCG 251
>seq1810009
Length=127
Score = 212 bits (234), Expect = 1e-52
Identities = 123/127 (97%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 158 AGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGG 217
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGCGACACGCCGTTGCCGG 60
Query 218 TCAGCACTTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGCA 277
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 TCAATACTTCCAGCTCTTTCATCATGTCGTAGTAACGCGGGTTGTATTCGCGCTTGAGCA 120
Query 278 CCTGGGC 284
|||||||
Sbjct 121 CCTGGGC 127
>seq1469778
Length=124
Score = 197 bits (218), Expect = 3e-48
Identities = 118/124 (95%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 117 CAGGTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCC 176
|||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 124 CAGGTCGGAGCCGAAGAACATGTTCAGCGCGTCGGTCGGCGAGCAGATCATCGCTTCGCC 65
Query 177 ACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGCACTTCCAGCTCTTT 236
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 64 ACGACGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGTACTTCCAGCTCTTT 5
Query 237 CATC 240
||||
Sbjct 4 CATC 1
>seq1838091
Length=127
Score = 185 bits (204), Expect = 2e-44
Identities = 117/127 (92%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 60 GTCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAG 119
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 1 GTCATAAGGGTCCACGCCGTCTTTGACGACCAGGATGTCTTCCATGATCAGGTACTGCAG 60
Query 120 GTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCCACG 179
||| ||||| |||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 61 GTCCGAGCCGAAGAACATGTTCAGCGCGTCGGTCGGCGAGCAGATCATTGCTTCGCCACG 120
Query 180 GCGGTTG 186
||||||
Sbjct 121 ACGGTTG 127
>seq2932238
Length=396
Score = 181 bits (200), Expect = 2e-43
Identities = 106/110 (96%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 1 CGAGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGATCAGCCGAGCGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 110 CGAGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGATCAGCCGACCGAG 51
Query 61 TCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAG 110
|||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 50 TCATAAGGGTCCACGCCGTCTTTGACGACCAGGATGTCTTCCATGATCAG 1
>seq707847
Length=107
Score = 179 bits (198), Expect = 9e-43
Identities = 104/107 (97%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 158 AGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGG 217
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGCGACACGCCGTTGCCGG 60
Query 218 TCAGCACTTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTAT 264
|||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCAGTACTTCCAGCTCTTTCATCATGTCGTAGTAACGCGGGTTGTAT 107
>seq426865
Length=100
Score = 158 bits (174), Expect = 3e-36
Identities = 95/100 (95%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 117 CAGGTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCC 176
|||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1 CAGGTCGGAGCCGAAGAACATGTTCAGCGCGTCGGTCGGCGAGCAGATCATCGCTTCGCC 60
Query 177 ACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCG 216
|||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ACGGCGGTTGAGCGAGGTGTTCAGCGACACGCCGTTGCCG 100
>seq3081341
Length=2340
Score = 145 bits (160), Expect = 2e-32
Identities = 86/90 (96%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 60 GTCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAG 119
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 91 GTCATAAGGGTCCACGCCATCCTTGACCACCAGGATGTCTTCCATGATCAGGTACTGCAG 32
Query 120 GTCGGAGCCAAAGAACATGTCCAGCGCGTC 149
||||||||| |||||||||| |||||||||
Sbjct 31 GTCGGAGCCGAAGAACATGTTCAGCGCGTC 2
>seq2694098
Length=196
Score = 132 bits (146), Expect = 1e-28
Identities = 76/78 (97%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 334 TCTTCCGACACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATC 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TCTTCCGACACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATC 61
Query 394 TGCGGGGCCACGGTGTCG 411
||||| || |||||||||
Sbjct 62 TGCGGCGCAACGGTGTCG 79
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1175342538592
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