Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001286.1 Length=411 Score E Sequences producing significant alignments: (Bits) Value seq65166 450 3e-124 seq2839651 403 4e-110 seq2851384 358 2e-96 seq2805409 309 7e-82 seq2876533 259 1e-66 seq170401 255 1e-65 seq1810009 212 1e-52 seq1469778 197 3e-48 seq1838091 185 2e-44 seq2932238 181 2e-43 seq707847 179 9e-43 seq426865 158 3e-36 seq3081341 145 2e-32 seq2694098 132 1e-28 >seq65166 Length=421 Score = 450 bits (498), Expect = 3e-124 Identities = 282/304 (93%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 108 CAGGTATTGCAGGTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCAT 167 |||||| |||||||||||||| |||||||||| ||||||||| |||||||||||||||| Sbjct 1 CAGGTACTGCAGGTCGGAGCCGAAGAACATGTTCAGCGCGTCGGTCGGCGAGCAGATCAT 60 Query 168 CGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGCACTTC 227 || ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 61 TGCCTCGCCGCGACGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGTACTTC 120 Query 228 CAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGGGCGCG 287 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 121 CAGCTCTTTCATCATGTCGTAGTAACGCGGGTTGTATTCGCGCTTGAGCACCTGGGCACG 180 Query 288 GGAGGTGCCATCTTCATGGACCACTTCCGGCACGCGGGTCTTCCACTCTTCCGACACTTC 347 ||| ||||| ||||| || |||||||||||||| ||||| ||||| |||||||||||||| Sbjct 181 GGAAGTGCCGTCTTCGTGCACCACTTCCGGCACACGGGTTTTCCATTCTTCCGACACTTC 240 Query 348 AAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATCTGCGGGGCCACGGT 407 |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| Sbjct 241 AAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATCTGTGGCGCAACGGT 300 Query 408 GTCG 411 |||| Sbjct 301 GTCG 304 >seq2839651 Length=261 Score = 403 bits (446), Expect = 4e-110 Identities = 246/261 (94%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 124 GAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCCACGGCGG 183 ||||| |||||||||| ||||||||| |||||||||||||||| ||||||||||| ||| Sbjct 1 GAGCCGAAGAACATGTTCAGCGCGTCGGTCGGCGAGCAGATCATTGCTTCGCCACGACGG 60 Query 184 TTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGCACTTCCAGCTCTTTCATCATG 243 ||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||| Sbjct 61 TTGAGCGAGGTGTTCAGCGACACACCGTTGCCGGTGAGTACTTCCAGCTCTTTCATCATG 120 Query 244 TCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGGGCGCGGGAGGTGCCATCTTCA 303 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 121 TCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGGGCACGGGAAGTGCCATCTTCG 180 Query 304 TGGACCACTTCCGGCACGCGGGTCTTCCACTCTTCCGACACTTCAAAGGTGAAGGTCATG 363 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 181 TGGACCACTTCCGGCACGCGGGTTTTCCATTCTTCCGACACTTCAAAGGTGAAGGTCATG 240 Query 364 AACGGCGCCGGGTGATCGACC 384 ||||||||||||||||||||| Sbjct 241 AACGGCGCCGGGTGATCGACC 261 >seq2851384 Length=271 Score = 358 bits (396), Expect = 2e-96 Identities = 213/223 (96%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 189 CGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGCACTTCCAGCTCTTTCATCATGTCGTA 248 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 CGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGTACTTCCAGCTCTTTCATCATGTCGTA 60 Query 249 GTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGGGCGCGGGAGGTGCCATCTTCATGGAC 308 ||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| || || Sbjct 61 GTAGCGCGGGTTGTACTCGCGCTTGAGTACCTGGGCACGGGAGGTGCCGTCTTCGTGCAC 120 Query 309 CACTTCCGGCACGCGGGTCTTCCACTCTTCCGACACTTCAAAGGTGAAGGTCATGAACGG 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CACTTCCGGCACGCGGGTCTTCCACTCTTCCGACACTTCAAAGGTGAAGGTCATGAACGG 180 Query 369 CGCCGGGTGATCGACCTTGATCATCTGCGGGGCCACGGTGTCG 411 |||||| || |||||||||||||| |||||||||||||||||| Sbjct 181 CGCCGGATGGTCGACCTTGATCATTTGCGGGGCCACGGTGTCG 223 >seq2805409 Length=238 Score = 309 bits (342), Expect = 7e-82 Identities = 182/189 (96%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 223 ACTTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGG 282 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2 ACTTCCAGCTCTTTCATCATGTCGTAGTAACGCGGGTTGTATTCGCGCTTGAGCACCTGG 61 Query 283 GCGCGGGAGGTGCCATCTTCATGGACCACTTCCGGCACGCGGGTCTTCCACTCTTCCGAC 342 |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct 62 GCGCGGGAAGTGCCATCTTCATGGACCACTTCCGGTACGCGGGTTTTCCACTCTTCGGAC 121 Query 343 ACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATCTGCGGGGCC 402 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 122 ACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATCTGTGGCGCC 181 Query 403 ACGGTGTCG 411 ||||||||| Sbjct 182 ACGGTGTCG 190 >seq2876533 Length=298 Score = 259 bits (286), Expect = 1e-66 Identities = 160/171 (94%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 3 AGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGATCAGCCGAGCGTGTC 62 |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct 171 AGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGCTCAGCCGACCGAGTC 112 Query 63 ATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAGGTC 122 |||||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||| Sbjct 111 ATAAGGGTCCACGCCGTCTTTGACGACCAGGATGTCTTCCATGATCAAGTACTGCAGGTC 52 Query 123 GGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTC 173 |||||| |||||||||| ||||||||| |||||||||||||||||||||| Sbjct 51 GGAGCCGAAGAACATGTTCAGCGCGTCGGTCGGCGAGCAGATCATCGCTTC 1 >seq170401 Length=2055 Score = 255 bits (282), Expect = 1e-65 Identities = 156/166 (94%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 51 GCCGAGCGTGTCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAG 110 ||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 166 GCCGACCGAGTCATAAGGGTCCACGCCGTCTTTGACGACCAGGATGTCTTCCATGATCAG 107 Query 111 GTATTGCAGGTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGC 170 |||||||||||||||||| |||||||||| ||||||||| | ||||||||||||||||| Sbjct 106 GTATTGCAGGTCGGAGCCGAAGAACATGTTCAGCGCGTCGGTTGGCGAGCAGATCATCGC 47 Query 171 TTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCG 216 |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 46 TTCGCCACGGCGGTTGAGCGAGGTGTTCAGCGACACGCCGTTGCCG 1 Score = 75.2 bits (82), Expect = 3e-11 Identities = 43/44 (98%), Gaps = 0/44 (0%) Strand=Plus/Minus Query 3 AGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCG 46 ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 294 AGGAACGGCCCGTCATAGCCGTGACAGAACTGCAGGACGTGGCG 251 >seq1810009 Length=127 Score = 212 bits (234), Expect = 1e-52 Identities = 123/127 (97%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 158 AGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGG 217 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 AGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGCGACACGCCGTTGCCGG 60 Query 218 TCAGCACTTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGCA 277 ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 TCAATACTTCCAGCTCTTTCATCATGTCGTAGTAACGCGGGTTGTATTCGCGCTTGAGCA 120 Query 278 CCTGGGC 284 ||||||| Sbjct 121 CCTGGGC 127 >seq1469778 Length=124 Score = 197 bits (218), Expect = 3e-48 Identities = 118/124 (95%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 117 CAGGTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCC 176 |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 124 CAGGTCGGAGCCGAAGAACATGTTCAGCGCGTCGGTCGGCGAGCAGATCATCGCTTCGCC 65 Query 177 ACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGCACTTCCAGCTCTTT 236 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 64 ACGACGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGTACTTCCAGCTCTTT 5 Query 237 CATC 240 |||| Sbjct 4 CATC 1 >seq1838091 Length=127 Score = 185 bits (204), Expect = 2e-44 Identities = 117/127 (92%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 60 GTCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAG 119 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct 1 GTCATAAGGGTCCACGCCGTCTTTGACGACCAGGATGTCTTCCATGATCAGGTACTGCAG 60 Query 120 GTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCCACG 179 ||| ||||| |||||||||| ||||||||| |||||||||||||||| ||||||||||| Sbjct 61 GTCCGAGCCGAAGAACATGTTCAGCGCGTCGGTCGGCGAGCAGATCATTGCTTCGCCACG 120 Query 180 GCGGTTG 186 |||||| Sbjct 121 ACGGTTG 127 >seq2932238 Length=396 Score = 181 bits (200), Expect = 2e-43 Identities = 106/110 (96%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1 CGAGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGATCAGCCGAGCGTG 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 110 CGAGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGATCAGCCGACCGAG 51 Query 61 TCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAG 110 |||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 50 TCATAAGGGTCCACGCCGTCTTTGACGACCAGGATGTCTTCCATGATCAG 1 >seq707847 Length=107 Score = 179 bits (198), Expect = 9e-43 Identities = 104/107 (97%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 158 AGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGG 217 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 AGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGCGACACGCCGTTGCCGG 60 Query 218 TCAGCACTTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTAT 264 |||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 TCAGTACTTCCAGCTCTTTCATCATGTCGTAGTAACGCGGGTTGTAT 107 >seq426865 Length=100 Score = 158 bits (174), Expect = 3e-36 Identities = 95/100 (95%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 117 CAGGTCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCC 176 |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 1 CAGGTCGGAGCCGAAGAACATGTTCAGCGCGTCGGTCGGCGAGCAGATCATCGCTTCGCC 60 Query 177 ACGGCGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCG 216 |||||||||||||||||||||||| ||||||||||||||| Sbjct 61 ACGGCGGTTGAGCGAGGTGTTCAGCGACACGCCGTTGCCG 100 >seq3081341 Length=2340 Score = 145 bits (160), Expect = 2e-32 Identities = 86/90 (96%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 60 GTCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAG 119 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 91 GTCATAAGGGTCCACGCCATCCTTGACCACCAGGATGTCTTCCATGATCAGGTACTGCAG 32 Query 120 GTCGGAGCCAAAGAACATGTCCAGCGCGTC 149 ||||||||| |||||||||| ||||||||| Sbjct 31 GTCGGAGCCGAAGAACATGTTCAGCGCGTC 2 >seq2694098 Length=196 Score = 132 bits (146), Expect = 1e-28 Identities = 76/78 (97%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 334 TCTTCCGACACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATC 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 TCTTCCGACACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATCGACCTTGATCATC 61 Query 394 TGCGGGGCCACGGTGTCG 411 ||||| || ||||||||| Sbjct 62 TGCGGCGCAACGGTGTCG 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175342538592