Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001305.1 Length=327 Score E Sequences producing significant alignments: (Bits) Value seq208332 410 2e-112 seq2989395 389 7e-106 seq3019721 369 7e-100 seq2831418 349 6e-94 seq2285558 131 3e-28 seq2285559 127 4e-27 >seq208332 Length=1491 Score = 410 bits (454), Expect = 2e-112 Identities = 288/327 (88%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 1 TCGAAGGGGCTACGCTGTTCAAGTTCATGGTGACGATGGAACGCGCCGAAGAACGCTTTA 60 |||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||| | Sbjct 894 TCGAAGGGGCTACGCTGTTCAAATTCATGGTGCCGATGGAGCGTGCCGAAGAACGCTTCA 953 Query 61 ATACATTGGAGGCGTTGTTTGAGCGCCTCATTCCGCAAATCCGTATGAAGGACGCCCCAA 120 |||| |||||||| |||||||||||||||| ||| ||||| | ||||||||||||| | Sbjct 954 ATACCCTGGAGGCGCTGTTTGAGCGCCTCATCCCG-AAATCTGCTTGAAGGACGCCCCCA 1012 Query 121 TGCGCCTGTTCCGCATTTTGAGCCTGTTGTTGGTGGTCGTGGCACCTGCGGCATTCGCCG 180 ||||||||||||||||| ||||| ||||||||||||| || |||||| |||| || |||| Sbjct 1013 TGCGCCTGTTCCGCATTCTGAGCTTGTTGTTGGTGGTGGTCGCACCTTCGGCGTTTGCCG 1072 Query 181 ACAGCCCGTACCAGGTGGAAATGATCCTCGTGCGCCAGAACGCCGAGCCGGTGATCAACA 240 |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 1073 ACAGCCCGTACCTGGTGGAAGTGATCCTGGTGCGCCAGAACGCCGAGCCGGTGATCAACA 1132 Query 241 GCCGCGCCGCGCCGGAAAACTGGGATGCCGGGGCCGTGCGCCTGGGCTCCGACAAACTGA 300 ||||||||||||||||||||||||||||||| || | ||| ||| ||||||| |||| Sbjct 1133 GCCGCGCCGCGCCGGAAAACTGGGATGCCGGCGCGGCGCGGCTGCCGACCGACAAGCTGA 1192 Query 301 GCCCGCCACGCCTGAACAATATCGTCG 327 |||| || || ||| ||| ||||||| Sbjct 1193 GCCCACCGCGGCTGGGCAACATCGTCG 1219 >seq2989395 Length=603 Score = 389 bits (430), Expect = 7e-106 Identities = 283/327 (87%), Gaps = 1/327 (0%) Strand=Plus/Minus Query 1 TCGAAGGGGCTACGCTGTTCAAGTTCATGGTGACGATGGAACGCGCCGAAGAACGCTTTA 60 |||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||| Sbjct 598 TCGAAGGGGCTACGCTGTTCAAATTCATGGTGCCGATGGAGCGTGCCGAAGAACGCTTTA 539 Query 61 ATACATTGGAGGCGTTGTTTGAGCGCCTCATTCCGCAAATCCGTATGAAGGACGCCCCAA 120 |||| |||||||| |||||||||| ||||| ||| ||||| | ||||||||||||| | Sbjct 538 ATACCCTGGAGGCGCTGTTTGAGCGTCTCATCCCG-AAATCTGCTTGAAGGACGCCCCCA 480 Query 121 TGCGCCTGTTCCGCATTTTGAGCCTGTTGTTGGTGGTCGTGGCACCTGCGGCATTCGCCG 180 ||||||||||||||||| ||||| | |||||||||| || || ||| ||||||| |||| Sbjct 479 TGCGCCTGTTCCGCATTCTGAGCTTAGTGTTGGTGGTGGTCGCTCCTTCGGCATTTGCCG 420 Query 181 ACAGCCCGTACCAGGTGGAAATGATCCTCGTGCGCCAGAACGCCGAGCCGGTGATCAACA 240 |||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 419 ACAGCCCGTACCTGGTGGAAATGATCCTGGTGCGCCAGAACGCCGAACCGGTAATCAACA 360 Query 241 GCCGCGCCGCGCCGGAAAACTGGGATGCCGGGGCCGTGCGCCTGGGCTCCGACAAACTGA 300 ||||||||||||||||||||||||||||||| || | ||| || ||||||| || | Sbjct 359 GCCGCGCCGCGCCGGAAAACTGGGATGCCGGCGCGGCGCGGTTGCCGACCGACAAGCTCA 300 Query 301 GCCCGCCACGCCTGAACAATATCGTCG 327 |||| || || ||| ||| ||||||| Sbjct 299 GCCCACCGCGGCTGGGCAACATCGTCG 273 >seq3019721 Length=802 Score = 369 bits (408), Expect = 7e-100 Identities = 279/327 (85%), Gaps = 4/327 (1%) Strand=Plus/Minus Query 1 TCGAAGGGGCTACGCTGTTCAAGTTCATGGTGACGATGGAACGCGCCGAAGAACGCTTTA 60 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | Sbjct 797 TCGAAGGGGCTACGCTGTTCAAGTTCATGGTGCCGATGGAACGTGCCGAAGAACGCTTCA 738 Query 61 ATACATTGGAGGCGTTGTTTGAGCGCCTCATTCCGCAAATCCGTATGAAGGACGCCCCAA 120 |||| |||||||| |||||||||||||||||||| ||||||| ||||||||||| | | Sbjct 737 ATACCCTGGAGGCGCTGTTTGAGCGCCTCATTCCG-AAATCCGCTTGAAGGACGCCTCCA 679 Query 121 TGCGCCTGTTCCGCATTTTGAGCCTGTTGTTGGTGGTCGTGGCACCTGCGGCATTCGCCG 180 ||||| | ||||||||| ||||||||||||||||||| | || ||| | || || |||| Sbjct 678 TGCGCGTATTCCGCATTCTGAGCCTGTTGTTGGTGGTACTCGCGCCTTCAGCCTTTGCCG 619 Query 181 ACAGCCCGTACCAGGTGGAAATGATCCTCGTGCGCCAGAACGCCGAGCCGGTGATCAACA 240 ||||||| ||||||||||| |||||||| ||||||||||| || ||||| |||||||||| Sbjct 618 ACAGCCCCTACCAGGTGGAGATGATCCTGGTGCGCCAGAATGCGGAGCCTGTGATCAACA 559 Query 241 GCCGCGCCGCGCCGGAAAACTGGGATGCCGGGGCCGTGCGCCTGGGCTCCGACAAACTGA 300 ||||||| || |||||||||||||||| ||| || ||||||||| ||| ||| Sbjct 558 GCCGCGCGGCCCCGGAAAACTGGGATGGCGGTGCGCCGCGCCTGGG---CGAGCGGATGA 502 Query 301 GCCCGCCACGCCTGAACAATATCGTCG 327 ||||||| |||||| || ||||||| Sbjct 501 GCCCGCCGCGCCTGGGTAACATCGTCG 475 >seq2831418 Length=254 Score = 349 bits (386), Expect = 6e-94 Identities = 228/250 (91%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 1 TCGAAGGGGCTACGCTGTTCAAGTTCATGGTGACGATGGAACGCGCCGAAGAACGCTTTA 60 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 249 TCGAAGGGGCTACGCTGTTCAAGTTCATGGTGCCGATGGAACGTGCCGAAGAACGCTTTA 190 Query 61 ATACATTGGAGGCGTTGTTTGAGCGCCTCATTCCGCAAATCCGTATGAAGGACGCCCCAA 120 ||||||| |||||| |||||||||||||||| ||| ||||| | ||||||||||||||| Sbjct 189 ATACATTAGAGGCGCTGTTTGAGCGCCTCATCCCG-AAATCTGCTTGAAGGACGCCCCAA 131 Query 121 TGCGCCTGTTCCGCATTTTGAGCCTGTTGTTGGTGGTCGTGGCACCTGCGGCATTCGCCG 180 ||||||||||||||||||||||| |||||||||||||||| || ||| |||| || |||| Sbjct 130 TGCGCCTGTTCCGCATTTTGAGCTTGTTGTTGGTGGTCGTTGCTCCTTCGGCGTTTGCCG 71 Query 181 ACAGCCCGTACCAGGTGGAAATGATCCTCGTGCGCCAGAACGCCGAGCCGGTGATCAACA 240 ||||||| || | |||||||||||| || ||||||||||||||||||||||||||||| | Sbjct 70 ACAGCCCCTATCTGGTGGAAATGATTCTGGTGCGCCAGAACGCCGAGCCGGTGATCAATA 11 Query 241 GCCGCGCCGC 250 ||||||| || Sbjct 10 GCCGCGCGGC 1 >seq2285558 Length=136 Score = 131 bits (144), Expect = 3e-28 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 194 GGTGGAAATGATCCTCGTGCGCCAGAACGCCGAGCCGGTGATCAACAGCCGCGCCGCGCC 253 |||||||||||| || ||||||||||||||||||||||||||||| |||||||| || || Sbjct 130 GGTGGAAATGATTCTGGTGCGCCAGAACGCCGAGCCGGTGATCAATAGCCGCGCGGCACC 71 Query 254 GGAAAACTGGGATGCCGGGGCCGTGCGCCTGGGCTCCGACAAACTGAGCCCGCCACGCCT 313 |||||||||||| |||||||| || ||| | |||||| | |||||||| || || Sbjct 70 GGAAAACTGGGACGCCGGGGCACCACGGCTGCCGGCGGACAAAATCAGCCCGCCGCGGCT 11 Query 314 GAACAATATC 323 | ||| ||| Sbjct 10 GGGCAACATC 1 >seq2285559 Length=136 Score = 127 bits (140), Expect = 4e-27 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 194 GGTGGAAATGATCCTCGTGCGCCAGAACGCCGAGCCGGTGATCAACAGCCGCGCCGCGCC 253 |||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 130 GGTGGAAATGATTCTGGTGCGCCAGAACGCCGAGCCGGTGATCAATAGCCGCGCGGCGCC 71 Query 254 GGAAAACTGGGATGCCGGGGCCGTGCGCCTGGGCTCCGACAAACTGAGCCCGCCACGCCT 313 ||||| ||||| |||||||| || ||| | |||||| | |||||||| || || Sbjct 70 AGAAAATTGGGACGCCGGGGCACCACGGCTGCCGGCGGACAAAATCAGCCCGCCGCGGCT 11 Query 314 GAACAATATC 323 | ||| ||| Sbjct 10 GGGCAACATC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914844456160