Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001305.1
Length=327
Score E
Sequences producing significant alignments: (Bits) Value
seq208332 410 2e-112
seq2989395 389 7e-106
seq3019721 369 7e-100
seq2831418 349 6e-94
seq2285558 131 3e-28
seq2285559 127 4e-27
>seq208332
Length=1491
Score = 410 bits (454), Expect = 2e-112
Identities = 288/327 (88%), Gaps = 1/327 (0%)
Strand=Plus/Plus
Query 1 TCGAAGGGGCTACGCTGTTCAAGTTCATGGTGACGATGGAACGCGCCGAAGAACGCTTTA 60
|||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||| |
Sbjct 894 TCGAAGGGGCTACGCTGTTCAAATTCATGGTGCCGATGGAGCGTGCCGAAGAACGCTTCA 953
Query 61 ATACATTGGAGGCGTTGTTTGAGCGCCTCATTCCGCAAATCCGTATGAAGGACGCCCCAA 120
|||| |||||||| |||||||||||||||| ||| ||||| | ||||||||||||| |
Sbjct 954 ATACCCTGGAGGCGCTGTTTGAGCGCCTCATCCCG-AAATCTGCTTGAAGGACGCCCCCA 1012
Query 121 TGCGCCTGTTCCGCATTTTGAGCCTGTTGTTGGTGGTCGTGGCACCTGCGGCATTCGCCG 180
||||||||||||||||| ||||| ||||||||||||| || |||||| |||| || ||||
Sbjct 1013 TGCGCCTGTTCCGCATTCTGAGCTTGTTGTTGGTGGTGGTCGCACCTTCGGCGTTTGCCG 1072
Query 181 ACAGCCCGTACCAGGTGGAAATGATCCTCGTGCGCCAGAACGCCGAGCCGGTGATCAACA 240
|||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1073 ACAGCCCGTACCTGGTGGAAGTGATCCTGGTGCGCCAGAACGCCGAGCCGGTGATCAACA 1132
Query 241 GCCGCGCCGCGCCGGAAAACTGGGATGCCGGGGCCGTGCGCCTGGGCTCCGACAAACTGA 300
||||||||||||||||||||||||||||||| || | ||| ||| ||||||| ||||
Sbjct 1133 GCCGCGCCGCGCCGGAAAACTGGGATGCCGGCGCGGCGCGGCTGCCGACCGACAAGCTGA 1192
Query 301 GCCCGCCACGCCTGAACAATATCGTCG 327
|||| || || ||| ||| |||||||
Sbjct 1193 GCCCACCGCGGCTGGGCAACATCGTCG 1219
>seq2989395
Length=603
Score = 389 bits (430), Expect = 7e-106
Identities = 283/327 (87%), Gaps = 1/327 (0%)
Strand=Plus/Minus
Query 1 TCGAAGGGGCTACGCTGTTCAAGTTCATGGTGACGATGGAACGCGCCGAAGAACGCTTTA 60
|||||||||||||||||||||| ||||||||| ||||||| || ||||||||||||||||
Sbjct 598 TCGAAGGGGCTACGCTGTTCAAATTCATGGTGCCGATGGAGCGTGCCGAAGAACGCTTTA 539
Query 61 ATACATTGGAGGCGTTGTTTGAGCGCCTCATTCCGCAAATCCGTATGAAGGACGCCCCAA 120
|||| |||||||| |||||||||| ||||| ||| ||||| | ||||||||||||| |
Sbjct 538 ATACCCTGGAGGCGCTGTTTGAGCGTCTCATCCCG-AAATCTGCTTGAAGGACGCCCCCA 480
Query 121 TGCGCCTGTTCCGCATTTTGAGCCTGTTGTTGGTGGTCGTGGCACCTGCGGCATTCGCCG 180
||||||||||||||||| ||||| | |||||||||| || || ||| ||||||| ||||
Sbjct 479 TGCGCCTGTTCCGCATTCTGAGCTTAGTGTTGGTGGTGGTCGCTCCTTCGGCATTTGCCG 420
Query 181 ACAGCCCGTACCAGGTGGAAATGATCCTCGTGCGCCAGAACGCCGAGCCGGTGATCAACA 240
|||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 419 ACAGCCCGTACCTGGTGGAAATGATCCTGGTGCGCCAGAACGCCGAACCGGTAATCAACA 360
Query 241 GCCGCGCCGCGCCGGAAAACTGGGATGCCGGGGCCGTGCGCCTGGGCTCCGACAAACTGA 300
||||||||||||||||||||||||||||||| || | ||| || ||||||| || |
Sbjct 359 GCCGCGCCGCGCCGGAAAACTGGGATGCCGGCGCGGCGCGGTTGCCGACCGACAAGCTCA 300
Query 301 GCCCGCCACGCCTGAACAATATCGTCG 327
|||| || || ||| ||| |||||||
Sbjct 299 GCCCACCGCGGCTGGGCAACATCGTCG 273
>seq3019721
Length=802
Score = 369 bits (408), Expect = 7e-100
Identities = 279/327 (85%), Gaps = 4/327 (1%)
Strand=Plus/Minus
Query 1 TCGAAGGGGCTACGCTGTTCAAGTTCATGGTGACGATGGAACGCGCCGAAGAACGCTTTA 60
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct 797 TCGAAGGGGCTACGCTGTTCAAGTTCATGGTGCCGATGGAACGTGCCGAAGAACGCTTCA 738
Query 61 ATACATTGGAGGCGTTGTTTGAGCGCCTCATTCCGCAAATCCGTATGAAGGACGCCCCAA 120
|||| |||||||| |||||||||||||||||||| ||||||| ||||||||||| | |
Sbjct 737 ATACCCTGGAGGCGCTGTTTGAGCGCCTCATTCCG-AAATCCGCTTGAAGGACGCCTCCA 679
Query 121 TGCGCCTGTTCCGCATTTTGAGCCTGTTGTTGGTGGTCGTGGCACCTGCGGCATTCGCCG 180
||||| | ||||||||| ||||||||||||||||||| | || ||| | || || ||||
Sbjct 678 TGCGCGTATTCCGCATTCTGAGCCTGTTGTTGGTGGTACTCGCGCCTTCAGCCTTTGCCG 619
Query 181 ACAGCCCGTACCAGGTGGAAATGATCCTCGTGCGCCAGAACGCCGAGCCGGTGATCAACA 240
||||||| ||||||||||| |||||||| ||||||||||| || ||||| ||||||||||
Sbjct 618 ACAGCCCCTACCAGGTGGAGATGATCCTGGTGCGCCAGAATGCGGAGCCTGTGATCAACA 559
Query 241 GCCGCGCCGCGCCGGAAAACTGGGATGCCGGGGCCGTGCGCCTGGGCTCCGACAAACTGA 300
||||||| || |||||||||||||||| ||| || ||||||||| ||| |||
Sbjct 558 GCCGCGCGGCCCCGGAAAACTGGGATGGCGGTGCGCCGCGCCTGGG---CGAGCGGATGA 502
Query 301 GCCCGCCACGCCTGAACAATATCGTCG 327
||||||| |||||| || |||||||
Sbjct 501 GCCCGCCGCGCCTGGGTAACATCGTCG 475
>seq2831418
Length=254
Score = 349 bits (386), Expect = 6e-94
Identities = 228/250 (91%), Gaps = 1/250 (0%)
Strand=Plus/Minus
Query 1 TCGAAGGGGCTACGCTGTTCAAGTTCATGGTGACGATGGAACGCGCCGAAGAACGCTTTA 60
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 249 TCGAAGGGGCTACGCTGTTCAAGTTCATGGTGCCGATGGAACGTGCCGAAGAACGCTTTA 190
Query 61 ATACATTGGAGGCGTTGTTTGAGCGCCTCATTCCGCAAATCCGTATGAAGGACGCCCCAA 120
||||||| |||||| |||||||||||||||| ||| ||||| | |||||||||||||||
Sbjct 189 ATACATTAGAGGCGCTGTTTGAGCGCCTCATCCCG-AAATCTGCTTGAAGGACGCCCCAA 131
Query 121 TGCGCCTGTTCCGCATTTTGAGCCTGTTGTTGGTGGTCGTGGCACCTGCGGCATTCGCCG 180
||||||||||||||||||||||| |||||||||||||||| || ||| |||| || ||||
Sbjct 130 TGCGCCTGTTCCGCATTTTGAGCTTGTTGTTGGTGGTCGTTGCTCCTTCGGCGTTTGCCG 71
Query 181 ACAGCCCGTACCAGGTGGAAATGATCCTCGTGCGCCAGAACGCCGAGCCGGTGATCAACA 240
||||||| || | |||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 70 ACAGCCCCTATCTGGTGGAAATGATTCTGGTGCGCCAGAACGCCGAGCCGGTGATCAATA 11
Query 241 GCCGCGCCGC 250
||||||| ||
Sbjct 10 GCCGCGCGGC 1
>seq2285558
Length=136
Score = 131 bits (144), Expect = 3e-28
Identities = 107/130 (82%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 194 GGTGGAAATGATCCTCGTGCGCCAGAACGCCGAGCCGGTGATCAACAGCCGCGCCGCGCC 253
|||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 130 GGTGGAAATGATTCTGGTGCGCCAGAACGCCGAGCCGGTGATCAATAGCCGCGCGGCACC 71
Query 254 GGAAAACTGGGATGCCGGGGCCGTGCGCCTGGGCTCCGACAAACTGAGCCCGCCACGCCT 313
|||||||||||| |||||||| || ||| | |||||| | |||||||| || ||
Sbjct 70 GGAAAACTGGGACGCCGGGGCACCACGGCTGCCGGCGGACAAAATCAGCCCGCCGCGGCT 11
Query 314 GAACAATATC 323
| ||| |||
Sbjct 10 GGGCAACATC 1
>seq2285559
Length=136
Score = 127 bits (140), Expect = 4e-27
Identities = 106/130 (82%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 194 GGTGGAAATGATCCTCGTGCGCCAGAACGCCGAGCCGGTGATCAACAGCCGCGCCGCGCC 253
|||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 130 GGTGGAAATGATTCTGGTGCGCCAGAACGCCGAGCCGGTGATCAATAGCCGCGCGGCGCC 71
Query 254 GGAAAACTGGGATGCCGGGGCCGTGCGCCTGGGCTCCGACAAACTGAGCCCGCCACGCCT 313
||||| ||||| |||||||| || ||| | |||||| | |||||||| || ||
Sbjct 70 AGAAAATTGGGACGCCGGGGCACCACGGCTGCCGGCGGACAAAATCAGCCCGCCGCGGCT 11
Query 314 GAACAATATC 323
| ||| |||
Sbjct 10 GGGCAACATC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914844456160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |