Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001353.1
Length=424
Score E
Sequences producing significant alignments: (Bits) Value
seq3088309 417 2e-114
seq3085851 336 5e-90
seq89928 331 2e-88
seq3026453 322 1e-85
seq358013 113 1e-22
>seq3088309
Length=8983
Score = 417 bits (462), Expect = 2e-114
Identities = 354/424 (83%), Gaps = 9/424 (2%)
Strand=Plus/Plus
Query 1 GCGCGCCAACGCGGTTTGCCATTCGCCCTACGCGGTTCAACGTCATTCGCTCACTCAGGC 60
|| ||||| ||||||||||| || |||||| ||||| || || || |||| || |||||
Sbjct 1068 GCCCGCCAGCGCGGTTTGCCTTT-GCCCTATGCGGTG-AATGTTAT-CGCTGAC-CAGGC 1123
Query 61 CGGGCCGGTAACGACGTTCGGCCGGCCCGGCGCTCGCCGGCCGAGCTCGCTGCCCGCCAT 120
||||| ||| ||| || |||| | ||| || |||||| | ||||||||||| |
Sbjct 1124 GAAACCGGTGGTGAC-TTCTGCGGGCCTTGGGCT-GCTGGCCGATC-CGCTGCCCGCCGT 1180
Query 121 TCGACCAGCCCCGCGACACGCCGGTGATCGCCGGTGGCTGGGGTGTGTACGGTGTTTGCC 180
||| ||||| ||||||||| |||||||||||| |||||||| || ||||| | |||
Sbjct 1181 -CGATCAGCCGTGCGACACGCTGGTGATCGCCGGCGGCTGGGGCGTATACGGCGCC-GCC 1238
Query 181 GAGGACCCGACGCTGGTGCAATGGGTGCGTGATAAATCCCTGCACACCCGGCGCATGGCC 240
|| |||||| |||||||||| |||||||| || || || | |||||||||||||||||||
Sbjct 1239 GAAGACCCGGCGCTGGTGCACTGGGTGCGGGAAAAGTCGCGGCACACCCGGCGCATGGCC 1298
Query 241 TCGGTCTGCACCGGGGCTTTTCTGCTGGCCGCCAGTGGTCTGCTTGATGGTTGCCGCGTG 300
|||||||| ||||| ||||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct 1299 TCGGTCTGTACCGGCGCTTTCCTGCTGGCCGCCAGTGGCCTGCTCGACGGTTGCCGCGTG 1358
Query 301 GCCACGCACTGGACGCGCTGTGAAGAACTGGCGCGCAAGTTCCCTGCACTCACGGTGGAG 360
||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||||||||
Sbjct 1359 GCCACTCACTGGACGCGTTGTGAAGAACTGGCGCGCAAGTTTCCTGCGCTGACGGTGGAG 1418
Query 361 GCCAATCCGATTTTCATCCAGCAGGGCGCGGTGTGGACGTCTGCTGGCGTGACCGCCGGG 420
||||||||||||| |||| ||| |||||| ||||||| || || ||||||||||||||
Sbjct 1419 TCCAATCCGATTTTTATCCGGCAAGGCGCGCTGTGGACCTCAGCCGGCGTGACCGCCGGT 1478
Query 421 ATCG 424
||||
Sbjct 1479 ATCG 1482
>seq3085851
Length=3585
Score = 336 bits (372), Expect = 5e-90
Identities = 335/424 (79%), Gaps = 9/424 (2%)
Strand=Plus/Minus
Query 1 GCGCGCCAACGCGGTTTGCCATTCGCCCTACGCGGTTCAACGTCATTCGCTCACTCAGGC 60
|||||||| ||||| || | || ||| ||||||||| || |||| | | ||||
Sbjct 3525 GCGCGCCAGCGCGGCCTGGCGTT-GCCTTACGCGGTTT--CGGTGGTCGC-CGCACAGGA 3470
Query 61 CGGGCCGGTAACGACGTTCGGCCGGCCCGGCGCTCGCCGGCCGAGCTCGCTGCCCGCCAT 120
|| |||||| | ||| | || |||||| |||| | | |||||||| ||||||||||
Sbjct 3469 CGCGCCGGTGATGACCTCCG-CCGGCCTGGCGTTGGT-GGCCGAGC-CGCTGCCCGCGGC 3413
Query 121 TCGACCAGCCCCGCGACACGCCGGTGATCGCCGGTGGCTGGGGTGTGTACGGTGTTTGCC 180
|| ||| ||||||||| |||||||||||| |||||||| ||||| || | |||
Sbjct 3412 GGATACA-CCCTGCGACACGCTGGTGATCGCCGGCGGCTGGGGCGTGTATGGCGCC-GCC 3355
Query 181 GAGGACCCGACGCTGGTGCAATGGGTGCGTGATAAATCCCTGCACACCCGGCGCATGGCC 240
|| ||||| |||||||||| |||||||| || || || ||||| ||||||||| |
Sbjct 3354 GAAGACCCTGCGCTGGTGCAGTGGGTGCGCGAAAAGGCCAAACACACACGGCGCATGACG 3295
Query 241 TCGGTCTGCACCGGGGCTTTTCTGCTGGCCGCCAGTGGTCTGCTTGATGGTTGCCGCGTG 300
||||| ||||||||||||||| |||| |||||||| || ||||| || || ||||| |||
Sbjct 3294 TCGGTGTGCACCGGGGCTTTTTTGCTCGCCGCCAGCGGCCTGCTCGACGGCTGCCGTGTG 3235
Query 301 GCCACGCACTGGACGCGCTGTGAAGAACTGGCGCGCAAGTTCCCTGCACTCACGGTGGAG 360
||||| |||||||| ||||||||||||||||||| |||||| || ||||| |||||||||
Sbjct 3234 GCCACCCACTGGACCCGCTGTGAAGAACTGGCGCACAAGTTTCCCGCACTGACGGTGGAG 3175
Query 361 GCCAATCCGATTTTCATCCAGCAGGGCGCGGTGTGGACGTCTGCTGGCGTGACCGCCGGG 420
|||| ||||| || |||||||| || ||||||||||| || || ||||| || |||||
Sbjct 3174 TCCAACCCGATCTTTATCCAGCAAGGTGCGGTGTGGACCTCCGCCGGCGTCACTGCCGGT 3115
Query 421 ATCG 424
||||
Sbjct 3114 ATCG 3111
>seq89928
Length=32753
Score = 331 bits (366), Expect = 2e-88
Identities = 335/425 (79%), Gaps = 11/425 (3%)
Strand=Plus/Minus
Query 1 GCGCGCCAACGCGGTTTGCCATTCGCCCTACGCGGTTCAACGTCATTCGCTCACTCAGGC 60
|||||||| ||||| ||||||| ||| |||||||| || |||| | | ||||
Sbjct 25227 GCGCGCCAGCGCGGCCTGCCATT-GCCTTACGCGGTCT--CGGTGGTCGC-CGCGCAGGA 25172
Query 61 CGGGCCGGTAACGACGTTCGGCCGGCCCGGCGCTCGCCGGCCGAGCTCGCTGCCCGCCAT 120
|| |||||| | ||| | || |||||| |||| | | ||| |||| ||||||||||
Sbjct 25171 CGCGCCGGTGATGACCTCCG-CCGGCCTGGCGTTGGT-GGCTGAGC-CGCTGCCCGCGC- 25116
Query 121 TCGACCAGCCCC-GCGACACGCCGGTGATCGCCGGTGGCTGGGGTGTGTACGGTGTTTGC 179
||| | ||| ||||||||| ||||||||| || |||||||| || ||||| | ||
Sbjct 25115 -CGAATACACCCTGCGACACGCTGGTGATCGCTGGCGGCTGGGGCGTTTACGGCGCC-GC 25058
Query 180 CGAGGACCCGACGCTGGTGCAATGGGTGCGTGATAAATCCCTGCACACCCGGCGCATGGC 239
||| ||||| || |||||||||||||||| || || || |||||||||||||||| |
Sbjct 25057 CGAAGACCCCGCGTTGGTGCAATGGGTGCGCGAAAAGGCCAGGCACACCCGGCGCATGAC 24998
Query 240 CTCGGTCTGCACCGGGGCTTTTCTGCTGGCCGCCAGTGGTCTGCTTGATGGTTGCCGCGT 299
||||| ||||||||||||||| |||| |||||||| || |||| || || || |||||
Sbjct 24997 GTCGGTGTGCACCGGGGCTTTTTTGCTCGCCGCCAGCGGCTTGCTCGACGGCTGTCGCGT 24938
Query 300 GGCCACGCACTGGACGCGCTGTGAAGAACTGGCGCGCAAGTTCCCTGCACTCACGGTGGA 359
|||||| |||||||| ||||| ||||| |||||||||||||| || || || ||||||||
Sbjct 24937 GGCCACCCACTGGACCCGCTGCGAAGAGCTGGCGCGCAAGTTTCCCGCGCTGACGGTGGA 24878
Query 360 GGCCAATCCGATTTTCATCCAGCAGGGCGCGGTGTGGACGTCTGCTGGCGTGACCGCCGG 419
| |||| ||||| || |||||||| || ||||||||||| || || || || ||||||||
Sbjct 24877 GCCCAACCCGATCTTTATCCAGCAAGGTGCGGTGTGGACCTCCGCCGGTGTCACCGCCGG 24818
Query 420 GATCG 424
||||
Sbjct 24817 CATCG 24813
>seq3026453
Length=860
Score = 322 bits (356), Expect = 1e-85
Identities = 334/425 (79%), Gaps = 11/425 (3%)
Strand=Plus/Plus
Query 1 GCGCGCCAACGCGGTTTGCCATTCGCCCTACGCGGT-TCAACGTCATTCGCTCACTCAGG 59
|||||||| ||||| ||| | ||| || ||||| || || ||| || | | ||||
Sbjct 225 GCGCGCCAGCGCGGCCAGCCGCT-GCCTTATGCGGTGTCG--GTGATT-GC-CGCCCAGG 279
Query 60 CCGGGCCGGTAACGACGTTCGGCCGGCCCGGCGCTCGCCGGCCGAGCTCGCTGCCCGCCA 119
| | ||||| | ||| | || | |||| ||| || | |||||||| ||||||| ||
Sbjct 280 CGGAACCGGTGATGACCTCCG-CGGGCCTGGC-CTTGGTGGCCGAGC-CGCTGCCTGCGG 336
Query 120 TTCGACCAGCCCCGCGACACGCCGGTGATCGCCGGTGGCTGGGGTGTGTACGGTGTTTGC 179
|||| || ||||||||| |||||||||||| |||||||| ||||| || | ||
Sbjct 337 C-CGACGCACCGTGCGACACGCTGGTGATCGCCGGCGGCTGGGGCGTGTATGGCGCC-GC 394
Query 180 CGAGGACCCGACGCTGGTGCAATGGGTGCGTGATAAATCCCTGCACACCCGGCGCATGGC 239
||| || | ||||||| | ||||| | ||| ||| ||||||||| |||||| |
Sbjct 395 CGAAGATGCCGCGCTGGTCGATTGGGTCACGCAAAAAGCCCGGCACACCCGACGCATGAC 454
Query 240 CTCGGTCTGCACCGGGGCTTTTCTGCTGGCCGCCAGTGGTCTGCTTGATGGTTGCCGCGT 299
|||||| |||||||||||||| ||||| |||||||| ||| |||| ||||||||||||||
Sbjct 455 CTCGGTGTGCACCGGGGCTTTCCTGCTCGCCGCCAGCGGTTTGCTCGATGGTTGCCGCGT 514
Query 300 GGCCACGCACTGGACGCGCTGTGAAGAACTGGCGCGCAAGTTCCCTGCACTCACGGTGGA 359
|||||| |||||||| ||||| || ||||||||||||||||| || | || ||||||||
Sbjct 515 GGCCACCCACTGGACACGCTGCGAGGAACTGGCGCGCAAGTTTCCGTCGCTGACGGTGGA 574
Query 360 GGCCAATCCGATTTTCATCCAGCAGGGCGCGGTGTGGACGTCTGCTGGCGTGACCGCCGG 419
|||||||||||||||||||||||| ||| ||||||||||||| || |||||||| || ||
Sbjct 575 GGCCAATCCGATTTTCATCCAGCAAGGCTCGGTGTGGACGTCCGCCGGCGTGACGGCTGG 634
Query 420 GATCG 424
||||
Sbjct 635 CATCG 639
>seq358013
Length=773
Score = 113 bits (124), Expect = 1e-22
Identities = 85/100 (85%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 325 GAACTGGCGCGCAAGTTCCCTGCACTCACGGTGGAGGCCAATCCGATTTTCATCCAGCAG 384
|||||||||||||| || || | || ||||| ||||||||||| ||||||||||||||
Sbjct 2 GAACTGGCGCGCAAATTTCCGTCGCTGACGGTTGAGGCCAATCCAATTTTCATCCAGCAA 61
Query 385 GGCGCGGTGTGGACGTCTGCTGGCGTGACCGCCGGGATCG 424
||| |||| |||||||| ||||||||||| || || ||||
Sbjct 62 GGCTCGGTATGGACGTCCGCTGGCGTGACGGCAGGCATCG 101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1215657718016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |