Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001353.1 Length=424 Score E Sequences producing significant alignments: (Bits) Value seq3088309 417 2e-114 seq3085851 336 5e-90 seq89928 331 2e-88 seq3026453 322 1e-85 seq358013 113 1e-22 >seq3088309 Length=8983 Score = 417 bits (462), Expect = 2e-114 Identities = 354/424 (83%), Gaps = 9/424 (2%) Strand=Plus/Plus Query 1 GCGCGCCAACGCGGTTTGCCATTCGCCCTACGCGGTTCAACGTCATTCGCTCACTCAGGC 60 || ||||| ||||||||||| || |||||| ||||| || || || |||| || ||||| Sbjct 1068 GCCCGCCAGCGCGGTTTGCCTTT-GCCCTATGCGGTG-AATGTTAT-CGCTGAC-CAGGC 1123 Query 61 CGGGCCGGTAACGACGTTCGGCCGGCCCGGCGCTCGCCGGCCGAGCTCGCTGCCCGCCAT 120 ||||| ||| ||| || |||| | ||| || |||||| | ||||||||||| | Sbjct 1124 GAAACCGGTGGTGAC-TTCTGCGGGCCTTGGGCT-GCTGGCCGATC-CGCTGCCCGCCGT 1180 Query 121 TCGACCAGCCCCGCGACACGCCGGTGATCGCCGGTGGCTGGGGTGTGTACGGTGTTTGCC 180 ||| ||||| ||||||||| |||||||||||| |||||||| || ||||| | ||| Sbjct 1181 -CGATCAGCCGTGCGACACGCTGGTGATCGCCGGCGGCTGGGGCGTATACGGCGCC-GCC 1238 Query 181 GAGGACCCGACGCTGGTGCAATGGGTGCGTGATAAATCCCTGCACACCCGGCGCATGGCC 240 || |||||| |||||||||| |||||||| || || || | ||||||||||||||||||| Sbjct 1239 GAAGACCCGGCGCTGGTGCACTGGGTGCGGGAAAAGTCGCGGCACACCCGGCGCATGGCC 1298 Query 241 TCGGTCTGCACCGGGGCTTTTCTGCTGGCCGCCAGTGGTCTGCTTGATGGTTGCCGCGTG 300 |||||||| ||||| ||||| ||||||||||||||||| ||||| || |||||||||||| Sbjct 1299 TCGGTCTGTACCGGCGCTTTCCTGCTGGCCGCCAGTGGCCTGCTCGACGGTTGCCGCGTG 1358 Query 301 GCCACGCACTGGACGCGCTGTGAAGAACTGGCGCGCAAGTTCCCTGCACTCACGGTGGAG 360 ||||| ||||||||||| ||||||||||||||||||||||| ||||| || ||||||||| Sbjct 1359 GCCACTCACTGGACGCGTTGTGAAGAACTGGCGCGCAAGTTTCCTGCGCTGACGGTGGAG 1418 Query 361 GCCAATCCGATTTTCATCCAGCAGGGCGCGGTGTGGACGTCTGCTGGCGTGACCGCCGGG 420 ||||||||||||| |||| ||| |||||| ||||||| || || |||||||||||||| Sbjct 1419 TCCAATCCGATTTTTATCCGGCAAGGCGCGCTGTGGACCTCAGCCGGCGTGACCGCCGGT 1478 Query 421 ATCG 424 |||| Sbjct 1479 ATCG 1482 >seq3085851 Length=3585 Score = 336 bits (372), Expect = 5e-90 Identities = 335/424 (79%), Gaps = 9/424 (2%) Strand=Plus/Minus Query 1 GCGCGCCAACGCGGTTTGCCATTCGCCCTACGCGGTTCAACGTCATTCGCTCACTCAGGC 60 |||||||| ||||| || | || ||| ||||||||| || |||| | | |||| Sbjct 3525 GCGCGCCAGCGCGGCCTGGCGTT-GCCTTACGCGGTTT--CGGTGGTCGC-CGCACAGGA 3470 Query 61 CGGGCCGGTAACGACGTTCGGCCGGCCCGGCGCTCGCCGGCCGAGCTCGCTGCCCGCCAT 120 || |||||| | ||| | || |||||| |||| | | |||||||| |||||||||| Sbjct 3469 CGCGCCGGTGATGACCTCCG-CCGGCCTGGCGTTGGT-GGCCGAGC-CGCTGCCCGCGGC 3413 Query 121 TCGACCAGCCCCGCGACACGCCGGTGATCGCCGGTGGCTGGGGTGTGTACGGTGTTTGCC 180 || ||| ||||||||| |||||||||||| |||||||| ||||| || | ||| Sbjct 3412 GGATACA-CCCTGCGACACGCTGGTGATCGCCGGCGGCTGGGGCGTGTATGGCGCC-GCC 3355 Query 181 GAGGACCCGACGCTGGTGCAATGGGTGCGTGATAAATCCCTGCACACCCGGCGCATGGCC 240 || ||||| |||||||||| |||||||| || || || ||||| ||||||||| | Sbjct 3354 GAAGACCCTGCGCTGGTGCAGTGGGTGCGCGAAAAGGCCAAACACACACGGCGCATGACG 3295 Query 241 TCGGTCTGCACCGGGGCTTTTCTGCTGGCCGCCAGTGGTCTGCTTGATGGTTGCCGCGTG 300 ||||| ||||||||||||||| |||| |||||||| || ||||| || || ||||| ||| Sbjct 3294 TCGGTGTGCACCGGGGCTTTTTTGCTCGCCGCCAGCGGCCTGCTCGACGGCTGCCGTGTG 3235 Query 301 GCCACGCACTGGACGCGCTGTGAAGAACTGGCGCGCAAGTTCCCTGCACTCACGGTGGAG 360 ||||| |||||||| ||||||||||||||||||| |||||| || ||||| ||||||||| Sbjct 3234 GCCACCCACTGGACCCGCTGTGAAGAACTGGCGCACAAGTTTCCCGCACTGACGGTGGAG 3175 Query 361 GCCAATCCGATTTTCATCCAGCAGGGCGCGGTGTGGACGTCTGCTGGCGTGACCGCCGGG 420 |||| ||||| || |||||||| || ||||||||||| || || ||||| || ||||| Sbjct 3174 TCCAACCCGATCTTTATCCAGCAAGGTGCGGTGTGGACCTCCGCCGGCGTCACTGCCGGT 3115 Query 421 ATCG 424 |||| Sbjct 3114 ATCG 3111 >seq89928 Length=32753 Score = 331 bits (366), Expect = 2e-88 Identities = 335/425 (79%), Gaps = 11/425 (3%) Strand=Plus/Minus Query 1 GCGCGCCAACGCGGTTTGCCATTCGCCCTACGCGGTTCAACGTCATTCGCTCACTCAGGC 60 |||||||| ||||| ||||||| ||| |||||||| || |||| | | |||| Sbjct 25227 GCGCGCCAGCGCGGCCTGCCATT-GCCTTACGCGGTCT--CGGTGGTCGC-CGCGCAGGA 25172 Query 61 CGGGCCGGTAACGACGTTCGGCCGGCCCGGCGCTCGCCGGCCGAGCTCGCTGCCCGCCAT 120 || |||||| | ||| | || |||||| |||| | | ||| |||| |||||||||| Sbjct 25171 CGCGCCGGTGATGACCTCCG-CCGGCCTGGCGTTGGT-GGCTGAGC-CGCTGCCCGCGC- 25116 Query 121 TCGACCAGCCCC-GCGACACGCCGGTGATCGCCGGTGGCTGGGGTGTGTACGGTGTTTGC 179 ||| | ||| ||||||||| ||||||||| || |||||||| || ||||| | || Sbjct 25115 -CGAATACACCCTGCGACACGCTGGTGATCGCTGGCGGCTGGGGCGTTTACGGCGCC-GC 25058 Query 180 CGAGGACCCGACGCTGGTGCAATGGGTGCGTGATAAATCCCTGCACACCCGGCGCATGGC 239 ||| ||||| || |||||||||||||||| || || || |||||||||||||||| | Sbjct 25057 CGAAGACCCCGCGTTGGTGCAATGGGTGCGCGAAAAGGCCAGGCACACCCGGCGCATGAC 24998 Query 240 CTCGGTCTGCACCGGGGCTTTTCTGCTGGCCGCCAGTGGTCTGCTTGATGGTTGCCGCGT 299 ||||| ||||||||||||||| |||| |||||||| || |||| || || || ||||| Sbjct 24997 GTCGGTGTGCACCGGGGCTTTTTTGCTCGCCGCCAGCGGCTTGCTCGACGGCTGTCGCGT 24938 Query 300 GGCCACGCACTGGACGCGCTGTGAAGAACTGGCGCGCAAGTTCCCTGCACTCACGGTGGA 359 |||||| |||||||| ||||| ||||| |||||||||||||| || || || |||||||| Sbjct 24937 GGCCACCCACTGGACCCGCTGCGAAGAGCTGGCGCGCAAGTTTCCCGCGCTGACGGTGGA 24878 Query 360 GGCCAATCCGATTTTCATCCAGCAGGGCGCGGTGTGGACGTCTGCTGGCGTGACCGCCGG 419 | |||| ||||| || |||||||| || ||||||||||| || || || || |||||||| Sbjct 24877 GCCCAACCCGATCTTTATCCAGCAAGGTGCGGTGTGGACCTCCGCCGGTGTCACCGCCGG 24818 Query 420 GATCG 424 |||| Sbjct 24817 CATCG 24813 >seq3026453 Length=860 Score = 322 bits (356), Expect = 1e-85 Identities = 334/425 (79%), Gaps = 11/425 (3%) Strand=Plus/Plus Query 1 GCGCGCCAACGCGGTTTGCCATTCGCCCTACGCGGT-TCAACGTCATTCGCTCACTCAGG 59 |||||||| ||||| ||| | ||| || ||||| || || ||| || | | |||| Sbjct 225 GCGCGCCAGCGCGGCCAGCCGCT-GCCTTATGCGGTGTCG--GTGATT-GC-CGCCCAGG 279 Query 60 CCGGGCCGGTAACGACGTTCGGCCGGCCCGGCGCTCGCCGGCCGAGCTCGCTGCCCGCCA 119 | | ||||| | ||| | || | |||| ||| || | |||||||| ||||||| || Sbjct 280 CGGAACCGGTGATGACCTCCG-CGGGCCTGGC-CTTGGTGGCCGAGC-CGCTGCCTGCGG 336 Query 120 TTCGACCAGCCCCGCGACACGCCGGTGATCGCCGGTGGCTGGGGTGTGTACGGTGTTTGC 179 |||| || ||||||||| |||||||||||| |||||||| ||||| || | || Sbjct 337 C-CGACGCACCGTGCGACACGCTGGTGATCGCCGGCGGCTGGGGCGTGTATGGCGCC-GC 394 Query 180 CGAGGACCCGACGCTGGTGCAATGGGTGCGTGATAAATCCCTGCACACCCGGCGCATGGC 239 ||| || | ||||||| | ||||| | ||| ||| ||||||||| |||||| | Sbjct 395 CGAAGATGCCGCGCTGGTCGATTGGGTCACGCAAAAAGCCCGGCACACCCGACGCATGAC 454 Query 240 CTCGGTCTGCACCGGGGCTTTTCTGCTGGCCGCCAGTGGTCTGCTTGATGGTTGCCGCGT 299 |||||| |||||||||||||| ||||| |||||||| ||| |||| |||||||||||||| Sbjct 455 CTCGGTGTGCACCGGGGCTTTCCTGCTCGCCGCCAGCGGTTTGCTCGATGGTTGCCGCGT 514 Query 300 GGCCACGCACTGGACGCGCTGTGAAGAACTGGCGCGCAAGTTCCCTGCACTCACGGTGGA 359 |||||| |||||||| ||||| || ||||||||||||||||| || | || |||||||| Sbjct 515 GGCCACCCACTGGACACGCTGCGAGGAACTGGCGCGCAAGTTTCCGTCGCTGACGGTGGA 574 Query 360 GGCCAATCCGATTTTCATCCAGCAGGGCGCGGTGTGGACGTCTGCTGGCGTGACCGCCGG 419 |||||||||||||||||||||||| ||| ||||||||||||| || |||||||| || || Sbjct 575 GGCCAATCCGATTTTCATCCAGCAAGGCTCGGTGTGGACGTCCGCCGGCGTGACGGCTGG 634 Query 420 GATCG 424 |||| Sbjct 635 CATCG 639 >seq358013 Length=773 Score = 113 bits (124), Expect = 1e-22 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 325 GAACTGGCGCGCAAGTTCCCTGCACTCACGGTGGAGGCCAATCCGATTTTCATCCAGCAG 384 |||||||||||||| || || | || ||||| ||||||||||| |||||||||||||| Sbjct 2 GAACTGGCGCGCAAATTTCCGTCGCTGACGGTTGAGGCCAATCCAATTTTCATCCAGCAA 61 Query 385 GGCGCGGTGTGGACGTCTGCTGGCGTGACCGCCGGGATCG 424 ||| |||| |||||||| ||||||||||| || || |||| Sbjct 62 GGCTCGGTATGGACGTCCGCTGGCGTGACGGCAGGCATCG 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1215657718016