Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001354.1 Length=381 Score E Sequences producing significant alignments: (Bits) Value seq141646 325 9e-87 seq3083977 279 1e-72 seq3025461 253 4e-65 seq3038680 230 5e-58 seq2853359 149 1e-33 seq2853401 145 2e-32 seq2872763 140 7e-31 seq2899778 127 4e-27 >seq141646 Length=11053 Score = 325 bits (360), Expect = 9e-87 Identities = 299/378 (79%), Gaps = 0/378 (0%) Strand=Plus/Minus Query 3 AGCAGTTCCACCGCGCGCAGATCGCCCGCCGAATCGTGGCCGGTGGGAATCAGGTTGGCG 62 |||||||| || ||| |||||||||||| ||||||||||||| ||| ||||||| ||| Sbjct 10471 AGCAGTTCGACGGCGTGCAGATCGCCCGTCGAATCGTGGCCGCAGGGGATCAGGTCGGCT 10412 Query 63 TCCAGCAGGGCGTCGGCAAAGGCGGGGTTGATGCCGTATCGGCAACGGTAACCCTCGTGG 122 || |||| ||||| ||| || || |||||||||||||| | |||||||||||| |||||| Sbjct 10411 TCGAGCAAGGCGTGGGCGAACGCAGGGTTGATGCCGTAGCTGCAACGGTAACCTTCGTGG 10352 Query 123 ATGTCCAGGCTGCCGTAGGCCTGGGCAATGCGCGTGTACGCGGCCAGGCGCACGGTGTCG 182 ||||||||||| |||| |||| ||| || |||||||| | |||||||| | | || || Sbjct 10351 GTGTCCAGGCTGGCGTAAGCCTCGGCGATACGCGTGTAGGGCGCCAGGCGGATGCTGCCG 10292 Query 183 TTCACTTCCACCAGGGAGCAGTCCAGCGGCGTGATGACGGCGCGCTCAGCATCGGGCATT 242 | | || ||||| || || | ||||||||||| || ||||||| || ||||| Sbjct 10291 GTGGCCTCGACCAGTGAACACGCAAGCGGCGTGATCACCGCGCGCTTGGCCTCGGGTGCC 10232 Query 243 AATTCGCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTCCAGCACGGCA 302 | |||||| |||| ||||| | |||||| ||||| | ||||||||||| | || || Sbjct 10231 AGTTCGCCATGCTCCGCATCCGTCCAGCCCAGCACGTTGCGGGCATATTCGATGACCGCG 10172 Query 303 TGTTGAAAACCGCCGCAGGTACCGAGGAAAGGGCGACCTTGTTCGCGGGCAAAACGTATC 362 |||||||| || ||||| || || ||||| ||||| ||| |||||||||||||| ||| Sbjct 10171 TGTTGAAACCCCCCGCAAGTGCCCAGGAATGGGCGTTTTTGCTCGCGGGCAAAACGAATC 10112 Query 363 GCGCGCAGGGCGCCGTCG 380 || |||| ||||||||| Sbjct 10111 GCCCGCAATGCGCCGTCG 10094 >seq3083977 Length=2831 Score = 279 bits (308), Expect = 1e-72 Identities = 288/377 (76%), Gaps = 0/377 (0%) Strand=Plus/Minus Query 4 GCAGTTCCACCGCGCGCAGATCGCCCGCCGAATCGTGGCCGGTGGGAATCAGGTTGGCGT 63 ||||||||| ||| || || ||||| || | ||| || ||| |||||||| | | | Sbjct 2112 GCAGTTCCATCGCACGAAGTTCGCCGGCAGCATCATGCCCGCCGGGAATCATCTCCCCCT 2053 Query 64 CCAGCAGGGCGTCGGCAAAGGCGGGGTTGATGCCGTATCGGCAACGGTAACCCTCGTGGA 123 | ||||| || | || || | || ||||| ||| | | |||||| ||||| ||||||| Sbjct 2052 CGAGCAGTGCATGAGCGAACTCTGGATTGATACCGAAGCTGCAACGATAACCTTCGTGGA 1993 Query 124 TGTCCAGGCTGCCGTAGGCCTGGGCAATGCGCGTGTACGCGGCCAGGCGCACGGTGTCGT 183 | ||||||||||||||||| ||||| || ||||||| | |||||||||||||||| Sbjct 1992 TATCCAGGCTGCCGTAGGCTTGGGCGATACGCGTGTTGGGTAGCAGGCGCACGGTGTCGC 1933 Query 184 TCACTTCCACCAGGGAGCAGTCCAGCGGCGTGATGACGGCGCGCTCAGCATCGGGCATTA 243 | |||||||||| | ||| || ||||| ||||| |||||| || | || | | Sbjct 1932 TTGCTTCCACCAGCGCACAGCTCAATGGCGTAATGACTGCGCGCCTGGCGCCCGGTACCA 1873 Query 244 ATTCGCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTCCAGCACGGCAT 303 | |||||||| | |||||| ||||| || ||||| | ||||||||||| ||||| || | Sbjct 1872 ACTCGCCGTGTTCGGCATCCGCCCATCCCAGCACGTTGCGGGCATATTCGAGCACAGCGT 1813 Query 304 GTTGAAAACCGCCGCAGGTACCGAGGAAAGGGCGACCTTGTTCGCGGGCAAAACGTATCG 363 | ||||||||||||||||| |||||||| || || | |||||||||||||| || || | Sbjct 1812 GCTGAAAACCGCCGCAGGTGCCGAGGAACGGCCGCCGCTGTTCGCGGGCAAAGCGGATGG 1753 Query 364 CGCGCAGGGCGCCGTCG 380 | ||||| ||||| ||| Sbjct 1752 CTCGCAGCGCGCCTTCG 1736 >seq3025461 Length=851 Score = 253 bits (280), Expect = 4e-65 Identities = 230/290 (79%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 3 AGCAGTTCCACCGCGCGCAGATCGCCCGCCGAATCGTGGCCGGTGGGAATCAGGTTGGCG 62 |||||||| || |||||||||||||| | |||||||||||| |||| ||||||| | | Sbjct 300 AGCAGTTCGACGGCGCGCAGATCGCCTGTTGAATCGTGGCCGCTGGGGATCAGGTCGCCT 241 Query 63 TCCAGCAGGGCGTCGGCAAAGGCGGGGTTGATGCCGTATCGGCAACGGTAACCCTCGTGG 122 || |||| || | ||| || ||||||||||||||||| | |||||||||||| |||||| Sbjct 240 TCGAGCAACGCCTGGGCGAACGCGGGGTTGATGCCGTAGCTGCAACGGTAACCTTCGTGG 181 Query 123 ATGTCCAGGCTGCCGTAGGCCTGGGCAATGCGCGTGTACGCGGCCAGGCGCACGGTGTCG 182 ||||||||||| ||||||||| ||| ||||||||||| | |||||||| | | || || Sbjct 180 GTGTCCAGGCTGGCGTAGGCCTCGGCGATGCGCGTGTAGGGCGCCAGGCGGATGCTGCCG 121 Query 183 TTCACTTCCACCAGGGAGCAGTCCAGCGGCGTGATGACGGCGCGCTCAGCATCGGGCATT 242 | | || |||||||| || | ||||| ||||| || ||||||| || ||||| Sbjct 120 GTGGCCTCGACCAGGGAACACGCAAGCGGTGTGATAACCGCGCGCTTGGCCGCGGGCGCC 61 Query 243 AATTCGCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTC 292 | |||||| |||| ||||| | |||||| ||||| | ||||||||||| Sbjct 60 AGTTCGCCATGCTCCGCATCCGTCCAGCCCAGCACGTTGCGGGCATATTC 11 >seq3038680 Length=992 Score = 230 bits (254), Expect = 5e-58 Identities = 226/292 (77%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 1 CGAGCAGTTCCACCGCGCGCAGATCGCCCGCCGAATCGTGGCCGGTGGGAATCAGGTTGG 60 |||||| ||| | |||||||||||||| ||||| ||||||||| |||||||||||| | Sbjct 701 CGAGCAATTCGATGGCGCGCAGATCGCCGGCCGAGTCGTGGCCGCTGGGAATCAGGTCGC 760 Query 61 CGTCCAGCAGGGCGTCGGCAAAGGCGGGGTTGATGCCGTATCGGCAACGGTAACCCTCGT 120 |||| ||| |||| ||| || |||||||||||||||| ||||| || ||||| |||| Sbjct 761 TTTCCAACAGTGCGTTGGCGAACTCGGGGTTGATGCCGTAGCGGCAGCGATAACCTTCGT 820 Query 121 GGATGTCCAGGCTGCCGTAGGCCTGGGCAATGCGCGTGTACGCGGCCAGGCGCACGGTGT 180 |||| ||||| |||||||||||| ||| ||||| ||||| | |||||||||||||||| Sbjct 821 GGATATCCAGCGTGCCGTAGGCCTCGGCGATGCGGGTGTAGGGCGCCAGGCGCACGGTGT 880 Query 181 CGTTCACTTCCACCAGGGAGCAGTCCAGCGGCGTGATGACGGCGCGCTCAGCATCGGGCA 240 | | | || ||||| | ||| ||||| ||||| || || |||| || | || Sbjct 881 CCGTGGCCTCTACCAGCGCGCAACTGAGCGGTGTGATCACCGCACGCTTGGCGTGCGGGG 940 Query 241 TTAATTCGCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTC 292 | ||||| || | |||||| ||||| || ||||| | ||||||||||| Sbjct 941 CCAGCTCGCCATGTTCGGCATCCGCCCAACCCAGCACGTTGCGGGCATATTC 992 >seq2853359 Length=273 Score = 149 bits (164), Expect = 1e-33 Identities = 114/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 246 TCGCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTCCAGCACGGCATGT 305 ||||| || | |||||| ||||| || ||||| | ||||||||||| ||||| |||||| Sbjct 257 TCGCCATGTTCGGCATCCGCCCAACCCAGCACGTTGCGGGCATATTCGAGCACCGCATGT 198 Query 306 TGAAAACCGCCGCAGGTACCGAGGAAAGGGCGACCTTGTTCGCGGGCAAAACGTATCGCG 365 |||||||||||||| || |||||||||||||| |||||||||||||| || ||||| Sbjct 197 TGAAAACCGCCGCACGTGCCGAGGAAAGGGCGCTTGTGTTCGCGGGCAAACCGGATCGCC 138 Query 366 CGCAGGGCGCCGTCG 380 ||||| ||||||||| Sbjct 137 CGCAGTGCGCCGTCG 123 >seq2853401 Length=273 Score = 145 bits (160), Expect = 2e-32 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 246 TCGCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTCCAGCACGGCATGT 305 ||||| || | |||||| ||||| || ||||| | ||||||||||||||||| ||||| Sbjct 257 TCGCCATGTTCGGCATCCGCCCAACCCAGCACGTTGCGGGCATATTCCAGCACCGCATGC 198 Query 306 TGAAAACCGCCGCAGGTACCGAGGAAAGGGCGACCTTGTTCGCGGGCAAAACGTATCGCG 365 |||||||||||||| || |||||||||||||| |||||||||||||| || ||||| Sbjct 197 TGAAAACCGCCGCACGTGCCGAGGAAAGGGCGCTTATGTTCGCGGGCAAACCGGATCGCC 138 Query 366 CGCAGGGCGCCGTCG 380 |||| ||||||||| Sbjct 137 CGCAATGCGCCGTCG 123 >seq2872763 Length=293 Score = 140 bits (154), Expect = 7e-31 Identities = 109/130 (84%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 1 CGAGCAGTTCCACCGCGCGCAGATCGCCCGCCGAATCGTGGCCGGTGGGAATCAGGTTGG 60 |||||||||| | |||||||||||||| ||||| ||||||||| |||| ||||||| | Sbjct 134 CGAGCAGTTCGATGGCGCGCAGATCGCCGGCCGAGTCGTGGCCGCTGGGGATCAGGTCGC 75 Query 61 CGTCCAGCAGGGCGTCGGCAAAGGCGGGGTTGATGCCGTATCGGCAACGGTAACCCTCGT 120 |||| ||| |||| ||| || |||||||||||||||| ||||| || |||||||||| Sbjct 74 TTTCCAACAGAGCGTTGGCGAACTCGGGGTTGATGCCGTAGCGGCAGCGATAACCCTCGT 15 Query 121 GGATGTCCAG 130 |||| ||||| Sbjct 14 GGATATCCAG 5 >seq2899778 Length=331 Score = 127 bits (140), Expect = 4e-27 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 248 GCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTCCAGCACGGCATGTTG 307 ||| |||| ||||| | |||||| ||||| | ||||||||||| | || || ||||| Sbjct 331 GCCATGCTCCGCATCCGTCCAGCCCAGCACGTTGCGGGCATATTCGATGACCGCGTGTTG 272 Query 308 AAAACCGCCGCAGGTACCGAGGAAAGGGCGACCTTGTTCGCGGGCAAAACGTATCGCGCG 367 |||||| |||||||| || ||||| ||||| ||| |||||||||||||| ||||| || Sbjct 271 AAAACCACCGCAGGTGCCCAGGAATGGGCGTTTTTGCTCGCGGGCAAAACGAATCGCCCG 212 Query 368 CAGGGCGCCGTCG 380 ||| ||||||||| Sbjct 211 CAGTGCGCCGTCG 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1082307509152