Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001354.1
Length=381
Score E
Sequences producing significant alignments: (Bits) Value
seq141646 325 9e-87
seq3083977 279 1e-72
seq3025461 253 4e-65
seq3038680 230 5e-58
seq2853359 149 1e-33
seq2853401 145 2e-32
seq2872763 140 7e-31
seq2899778 127 4e-27
>seq141646
Length=11053
Score = 325 bits (360), Expect = 9e-87
Identities = 299/378 (79%), Gaps = 0/378 (0%)
Strand=Plus/Minus
Query 3 AGCAGTTCCACCGCGCGCAGATCGCCCGCCGAATCGTGGCCGGTGGGAATCAGGTTGGCG 62
|||||||| || ||| |||||||||||| ||||||||||||| ||| ||||||| |||
Sbjct 10471 AGCAGTTCGACGGCGTGCAGATCGCCCGTCGAATCGTGGCCGCAGGGGATCAGGTCGGCT 10412
Query 63 TCCAGCAGGGCGTCGGCAAAGGCGGGGTTGATGCCGTATCGGCAACGGTAACCCTCGTGG 122
|| |||| ||||| ||| || || |||||||||||||| | |||||||||||| ||||||
Sbjct 10411 TCGAGCAAGGCGTGGGCGAACGCAGGGTTGATGCCGTAGCTGCAACGGTAACCTTCGTGG 10352
Query 123 ATGTCCAGGCTGCCGTAGGCCTGGGCAATGCGCGTGTACGCGGCCAGGCGCACGGTGTCG 182
||||||||||| |||| |||| ||| || |||||||| | |||||||| | | || ||
Sbjct 10351 GTGTCCAGGCTGGCGTAAGCCTCGGCGATACGCGTGTAGGGCGCCAGGCGGATGCTGCCG 10292
Query 183 TTCACTTCCACCAGGGAGCAGTCCAGCGGCGTGATGACGGCGCGCTCAGCATCGGGCATT 242
| | || ||||| || || | ||||||||||| || ||||||| || |||||
Sbjct 10291 GTGGCCTCGACCAGTGAACACGCAAGCGGCGTGATCACCGCGCGCTTGGCCTCGGGTGCC 10232
Query 243 AATTCGCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTCCAGCACGGCA 302
| |||||| |||| ||||| | |||||| ||||| | ||||||||||| | || ||
Sbjct 10231 AGTTCGCCATGCTCCGCATCCGTCCAGCCCAGCACGTTGCGGGCATATTCGATGACCGCG 10172
Query 303 TGTTGAAAACCGCCGCAGGTACCGAGGAAAGGGCGACCTTGTTCGCGGGCAAAACGTATC 362
|||||||| || ||||| || || ||||| ||||| ||| |||||||||||||| |||
Sbjct 10171 TGTTGAAACCCCCCGCAAGTGCCCAGGAATGGGCGTTTTTGCTCGCGGGCAAAACGAATC 10112
Query 363 GCGCGCAGGGCGCCGTCG 380
|| |||| |||||||||
Sbjct 10111 GCCCGCAATGCGCCGTCG 10094
>seq3083977
Length=2831
Score = 279 bits (308), Expect = 1e-72
Identities = 288/377 (76%), Gaps = 0/377 (0%)
Strand=Plus/Minus
Query 4 GCAGTTCCACCGCGCGCAGATCGCCCGCCGAATCGTGGCCGGTGGGAATCAGGTTGGCGT 63
||||||||| ||| || || ||||| || | ||| || ||| |||||||| | | |
Sbjct 2112 GCAGTTCCATCGCACGAAGTTCGCCGGCAGCATCATGCCCGCCGGGAATCATCTCCCCCT 2053
Query 64 CCAGCAGGGCGTCGGCAAAGGCGGGGTTGATGCCGTATCGGCAACGGTAACCCTCGTGGA 123
| ||||| || | || || | || ||||| ||| | | |||||| ||||| |||||||
Sbjct 2052 CGAGCAGTGCATGAGCGAACTCTGGATTGATACCGAAGCTGCAACGATAACCTTCGTGGA 1993
Query 124 TGTCCAGGCTGCCGTAGGCCTGGGCAATGCGCGTGTACGCGGCCAGGCGCACGGTGTCGT 183
| ||||||||||||||||| ||||| || ||||||| | ||||||||||||||||
Sbjct 1992 TATCCAGGCTGCCGTAGGCTTGGGCGATACGCGTGTTGGGTAGCAGGCGCACGGTGTCGC 1933
Query 184 TCACTTCCACCAGGGAGCAGTCCAGCGGCGTGATGACGGCGCGCTCAGCATCGGGCATTA 243
| |||||||||| | ||| || ||||| ||||| |||||| || | || | |
Sbjct 1932 TTGCTTCCACCAGCGCACAGCTCAATGGCGTAATGACTGCGCGCCTGGCGCCCGGTACCA 1873
Query 244 ATTCGCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTCCAGCACGGCAT 303
| |||||||| | |||||| ||||| || ||||| | ||||||||||| ||||| || |
Sbjct 1872 ACTCGCCGTGTTCGGCATCCGCCCATCCCAGCACGTTGCGGGCATATTCGAGCACAGCGT 1813
Query 304 GTTGAAAACCGCCGCAGGTACCGAGGAAAGGGCGACCTTGTTCGCGGGCAAAACGTATCG 363
| ||||||||||||||||| |||||||| || || | |||||||||||||| || || |
Sbjct 1812 GCTGAAAACCGCCGCAGGTGCCGAGGAACGGCCGCCGCTGTTCGCGGGCAAAGCGGATGG 1753
Query 364 CGCGCAGGGCGCCGTCG 380
| ||||| ||||| |||
Sbjct 1752 CTCGCAGCGCGCCTTCG 1736
>seq3025461
Length=851
Score = 253 bits (280), Expect = 4e-65
Identities = 230/290 (79%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 3 AGCAGTTCCACCGCGCGCAGATCGCCCGCCGAATCGTGGCCGGTGGGAATCAGGTTGGCG 62
|||||||| || |||||||||||||| | |||||||||||| |||| ||||||| | |
Sbjct 300 AGCAGTTCGACGGCGCGCAGATCGCCTGTTGAATCGTGGCCGCTGGGGATCAGGTCGCCT 241
Query 63 TCCAGCAGGGCGTCGGCAAAGGCGGGGTTGATGCCGTATCGGCAACGGTAACCCTCGTGG 122
|| |||| || | ||| || ||||||||||||||||| | |||||||||||| ||||||
Sbjct 240 TCGAGCAACGCCTGGGCGAACGCGGGGTTGATGCCGTAGCTGCAACGGTAACCTTCGTGG 181
Query 123 ATGTCCAGGCTGCCGTAGGCCTGGGCAATGCGCGTGTACGCGGCCAGGCGCACGGTGTCG 182
||||||||||| ||||||||| ||| ||||||||||| | |||||||| | | || ||
Sbjct 180 GTGTCCAGGCTGGCGTAGGCCTCGGCGATGCGCGTGTAGGGCGCCAGGCGGATGCTGCCG 121
Query 183 TTCACTTCCACCAGGGAGCAGTCCAGCGGCGTGATGACGGCGCGCTCAGCATCGGGCATT 242
| | || |||||||| || | ||||| ||||| || ||||||| || |||||
Sbjct 120 GTGGCCTCGACCAGGGAACACGCAAGCGGTGTGATAACCGCGCGCTTGGCCGCGGGCGCC 61
Query 243 AATTCGCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTC 292
| |||||| |||| ||||| | |||||| ||||| | |||||||||||
Sbjct 60 AGTTCGCCATGCTCCGCATCCGTCCAGCCCAGCACGTTGCGGGCATATTC 11
>seq3038680
Length=992
Score = 230 bits (254), Expect = 5e-58
Identities = 226/292 (77%), Gaps = 0/292 (0%)
Strand=Plus/Plus
Query 1 CGAGCAGTTCCACCGCGCGCAGATCGCCCGCCGAATCGTGGCCGGTGGGAATCAGGTTGG 60
|||||| ||| | |||||||||||||| ||||| ||||||||| |||||||||||| |
Sbjct 701 CGAGCAATTCGATGGCGCGCAGATCGCCGGCCGAGTCGTGGCCGCTGGGAATCAGGTCGC 760
Query 61 CGTCCAGCAGGGCGTCGGCAAAGGCGGGGTTGATGCCGTATCGGCAACGGTAACCCTCGT 120
|||| ||| |||| ||| || |||||||||||||||| ||||| || ||||| ||||
Sbjct 761 TTTCCAACAGTGCGTTGGCGAACTCGGGGTTGATGCCGTAGCGGCAGCGATAACCTTCGT 820
Query 121 GGATGTCCAGGCTGCCGTAGGCCTGGGCAATGCGCGTGTACGCGGCCAGGCGCACGGTGT 180
|||| ||||| |||||||||||| ||| ||||| ||||| | ||||||||||||||||
Sbjct 821 GGATATCCAGCGTGCCGTAGGCCTCGGCGATGCGGGTGTAGGGCGCCAGGCGCACGGTGT 880
Query 181 CGTTCACTTCCACCAGGGAGCAGTCCAGCGGCGTGATGACGGCGCGCTCAGCATCGGGCA 240
| | | || ||||| | ||| ||||| ||||| || || |||| || | ||
Sbjct 881 CCGTGGCCTCTACCAGCGCGCAACTGAGCGGTGTGATCACCGCACGCTTGGCGTGCGGGG 940
Query 241 TTAATTCGCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTC 292
| ||||| || | |||||| ||||| || ||||| | |||||||||||
Sbjct 941 CCAGCTCGCCATGTTCGGCATCCGCCCAACCCAGCACGTTGCGGGCATATTC 992
>seq2853359
Length=273
Score = 149 bits (164), Expect = 1e-33
Identities = 114/135 (84%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 246 TCGCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTCCAGCACGGCATGT 305
||||| || | |||||| ||||| || ||||| | ||||||||||| ||||| ||||||
Sbjct 257 TCGCCATGTTCGGCATCCGCCCAACCCAGCACGTTGCGGGCATATTCGAGCACCGCATGT 198
Query 306 TGAAAACCGCCGCAGGTACCGAGGAAAGGGCGACCTTGTTCGCGGGCAAAACGTATCGCG 365
|||||||||||||| || |||||||||||||| |||||||||||||| || |||||
Sbjct 197 TGAAAACCGCCGCACGTGCCGAGGAAAGGGCGCTTGTGTTCGCGGGCAAACCGGATCGCC 138
Query 366 CGCAGGGCGCCGTCG 380
||||| |||||||||
Sbjct 137 CGCAGTGCGCCGTCG 123
>seq2853401
Length=273
Score = 145 bits (160), Expect = 2e-32
Identities = 113/135 (84%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 246 TCGCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTCCAGCACGGCATGT 305
||||| || | |||||| ||||| || ||||| | ||||||||||||||||| |||||
Sbjct 257 TCGCCATGTTCGGCATCCGCCCAACCCAGCACGTTGCGGGCATATTCCAGCACCGCATGC 198
Query 306 TGAAAACCGCCGCAGGTACCGAGGAAAGGGCGACCTTGTTCGCGGGCAAAACGTATCGCG 365
|||||||||||||| || |||||||||||||| |||||||||||||| || |||||
Sbjct 197 TGAAAACCGCCGCACGTGCCGAGGAAAGGGCGCTTATGTTCGCGGGCAAACCGGATCGCC 138
Query 366 CGCAGGGCGCCGTCG 380
|||| |||||||||
Sbjct 137 CGCAATGCGCCGTCG 123
>seq2872763
Length=293
Score = 140 bits (154), Expect = 7e-31
Identities = 109/130 (84%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 1 CGAGCAGTTCCACCGCGCGCAGATCGCCCGCCGAATCGTGGCCGGTGGGAATCAGGTTGG 60
|||||||||| | |||||||||||||| ||||| ||||||||| |||| ||||||| |
Sbjct 134 CGAGCAGTTCGATGGCGCGCAGATCGCCGGCCGAGTCGTGGCCGCTGGGGATCAGGTCGC 75
Query 61 CGTCCAGCAGGGCGTCGGCAAAGGCGGGGTTGATGCCGTATCGGCAACGGTAACCCTCGT 120
|||| ||| |||| ||| || |||||||||||||||| ||||| || ||||||||||
Sbjct 74 TTTCCAACAGAGCGTTGGCGAACTCGGGGTTGATGCCGTAGCGGCAGCGATAACCCTCGT 15
Query 121 GGATGTCCAG 130
|||| |||||
Sbjct 14 GGATATCCAG 5
>seq2899778
Length=331
Score = 127 bits (140), Expect = 4e-27
Identities = 108/133 (81%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 248 GCCGTGCTGGGCATCGGCCCAGCCGAGCACATGACGGGCATATTCCAGCACGGCATGTTG 307
||| |||| ||||| | |||||| ||||| | ||||||||||| | || || |||||
Sbjct 331 GCCATGCTCCGCATCCGTCCAGCCCAGCACGTTGCGGGCATATTCGATGACCGCGTGTTG 272
Query 308 AAAACCGCCGCAGGTACCGAGGAAAGGGCGACCTTGTTCGCGGGCAAAACGTATCGCGCG 367
|||||| |||||||| || ||||| ||||| ||| |||||||||||||| ||||| ||
Sbjct 271 AAAACCACCGCAGGTGCCCAGGAATGGGCGTTTTTGCTCGCGGGCAAAACGAATCGCCCG 212
Query 368 CAGGGCGCCGTCG 380
||| |||||||||
Sbjct 211 CAGTGCGCCGTCG 199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1082307509152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |