Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001377.1 Length=151 Score E Sequences producing significant alignments: (Bits) Value seq2926941 201 9e-50 seq3035263 196 4e-48 seq33894 192 4e-47 seq2629317 134 1e-29 seq2787855 131 1e-28 seq2890403 100 2e-19 >seq2926941 Length=384 Score = 201 bits (222), Expect = 9e-50 Identities = 135/151 (89%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 1 CGAAAATTGCTGAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTAT 60 |||| || |||||||| ||||||||||| |||||||||||||||||||| |||||||| Sbjct 184 CGAAGATCGCTGAAGACGCCATCGCCCAGGTGCGCGCCCAGGTCGGCACCGACAACGTGC 125 Query 61 TGCTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCA 120 |||| |||||||||||||||||||||||||| || || ||||| ||||||||||| |||| Sbjct 124 TGCTCGGCCTGTCCGGCGGCGTTGACTCCTCCGTGGTTGCGGCTCTGCTGCACAAAGCCA 65 Query 121 TCGGCGACCAACTGACCTGCGTGTTTGTCGA 151 |||||||||| ||||||||||||| ||||| Sbjct 64 TCGGCGACCAGTTGACCTGCGTGTTCGTCGA 34 >seq3035263 Length=951 Score = 196 bits (216), Expect = 4e-48 Identities = 134/151 (89%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 1 CGAAAATTGCTGAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTAT 60 ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 386 CGAAAATCGCTGAAGACGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACCGACAACGTGC 327 Query 61 TGCTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCA 120 |||| ||||||||||||||||| |||||||| || || || || ||||||||||| |||| Sbjct 326 TGCTCGGCCTGTCCGGCGGCGTCGACTCCTCCGTGGTCGCCGCGCTGCTGCACAAAGCCA 267 Query 121 TCGGCGACCAACTGACCTGCGTGTTTGTCGA 151 | ||||||||||||||||| || || ||||| Sbjct 266 TTGGCGACCAACTGACCTGTGTCTTCGTCGA 236 >seq33894 Length=7863 Score = 192 bits (212), Expect = 4e-47 Identities = 133/151 (88%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 1 CGAAAATTGCTGAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTAT 60 ||||||| |||||||| ||||||||| | ||||| |||||||||||||| |||||||| Sbjct 462 CGAAAATCGCTGAAGACGCCATCGCCAACGTGCGTGCCCAGGTCGGCACCGACAACGTGC 521 Query 61 TGCTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCA 120 |||| |||||||||||||||||||| ||||| || ||||| || |||||||||| |||| Sbjct 522 TGCTCGGCCTGTCCGGCGGCGTTGATTCCTCCGTGGTAGCAGCCTTGCTGCACAAAGCCA 581 Query 121 TCGGCGACCAACTGACCTGCGTGTTTGTCGA 151 |||||||||| |||||||||||||| ||||| Sbjct 582 TCGGCGACCAGCTGACCTGCGTGTTCGTCGA 612 >seq2629317 Length=184 Score = 134 bits (148), Expect = 1e-29 Identities = 94/107 (88%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1 CGAAAATTGCTGAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTAT 60 ||||||| |||||||| ||||||||| | ||||| ||||||||||| || |||||||||| Sbjct 78 CGAAAATCGCTGAAGACGCCATCGCCAACGTGCGTGCCCAGGTCGGTACCGACAACGTAT 137 Query 61 TGCTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTG 107 |||| |||||||||||||||||||||||||| || || || || ||| Sbjct 138 TGCTCGGCCTGTCCGGCGGCGTTGACTCCTCCGTGGTTGCCGCGCTG 184 >seq2787855 Length=229 Score = 131 bits (144), Expect = 1e-28 Identities = 93/107 (87%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1 CGAAAATTGCTGAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTAT 60 ||||||| |||||||| ||||||||| | ||||| |||||||| || || |||||||||| Sbjct 123 CGAAAATCGCTGAAGACGCCATCGCCAACGTGCGTGCCCAGGTGGGTACCGACAACGTAT 182 Query 61 TGCTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTG 107 |||| |||||||||||||||||||||||||| || || || || ||| Sbjct 183 TGCTCGGCCTGTCCGGCGGCGTTGACTCCTCCGTGGTTGCCGCGCTG 229 >seq2890403 Length=316 Score = 100 bits (110), Expect = 2e-19 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 74 CGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACT 133 |||||||||||||||||| || || || || ||||||||||| |||||||||||||| || Sbjct 1 CGGCGGCGTTGACTCCTCCGTGGTTGCCGCGCTGCTGCACAAAGCCATCGGCGACCAGCT 60 Query 134 GACCTGCGTGTTTGTCGA 151 ||| |||||||| ||||| Sbjct 61 GACGTGCGTGTTCGTCGA 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 375988705070