Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001377.1
Length=151
Score E
Sequences producing significant alignments: (Bits) Value
seq2926941 201 9e-50
seq3035263 196 4e-48
seq33894 192 4e-47
seq2629317 134 1e-29
seq2787855 131 1e-28
seq2890403 100 2e-19
>seq2926941
Length=384
Score = 201 bits (222), Expect = 9e-50
Identities = 135/151 (89%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 1 CGAAAATTGCTGAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTAT 60
|||| || |||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 184 CGAAGATCGCTGAAGACGCCATCGCCCAGGTGCGCGCCCAGGTCGGCACCGACAACGTGC 125
Query 61 TGCTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCA 120
|||| |||||||||||||||||||||||||| || || ||||| ||||||||||| ||||
Sbjct 124 TGCTCGGCCTGTCCGGCGGCGTTGACTCCTCCGTGGTTGCGGCTCTGCTGCACAAAGCCA 65
Query 121 TCGGCGACCAACTGACCTGCGTGTTTGTCGA 151
|||||||||| ||||||||||||| |||||
Sbjct 64 TCGGCGACCAGTTGACCTGCGTGTTCGTCGA 34
>seq3035263
Length=951
Score = 196 bits (216), Expect = 4e-48
Identities = 134/151 (89%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 1 CGAAAATTGCTGAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTAT 60
||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 386 CGAAAATCGCTGAAGACGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACCGACAACGTGC 327
Query 61 TGCTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCA 120
|||| ||||||||||||||||| |||||||| || || || || ||||||||||| ||||
Sbjct 326 TGCTCGGCCTGTCCGGCGGCGTCGACTCCTCCGTGGTCGCCGCGCTGCTGCACAAAGCCA 267
Query 121 TCGGCGACCAACTGACCTGCGTGTTTGTCGA 151
| ||||||||||||||||| || || |||||
Sbjct 266 TTGGCGACCAACTGACCTGTGTCTTCGTCGA 236
>seq33894
Length=7863
Score = 192 bits (212), Expect = 4e-47
Identities = 133/151 (88%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 1 CGAAAATTGCTGAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTAT 60
||||||| |||||||| ||||||||| | ||||| |||||||||||||| ||||||||
Sbjct 462 CGAAAATCGCTGAAGACGCCATCGCCAACGTGCGTGCCCAGGTCGGCACCGACAACGTGC 521
Query 61 TGCTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCA 120
|||| |||||||||||||||||||| ||||| || ||||| || |||||||||| ||||
Sbjct 522 TGCTCGGCCTGTCCGGCGGCGTTGATTCCTCCGTGGTAGCAGCCTTGCTGCACAAAGCCA 581
Query 121 TCGGCGACCAACTGACCTGCGTGTTTGTCGA 151
|||||||||| |||||||||||||| |||||
Sbjct 582 TCGGCGACCAGCTGACCTGCGTGTTCGTCGA 612
>seq2629317
Length=184
Score = 134 bits (148), Expect = 1e-29
Identities = 94/107 (88%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1 CGAAAATTGCTGAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTAT 60
||||||| |||||||| ||||||||| | ||||| ||||||||||| || ||||||||||
Sbjct 78 CGAAAATCGCTGAAGACGCCATCGCCAACGTGCGTGCCCAGGTCGGTACCGACAACGTAT 137
Query 61 TGCTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTG 107
|||| |||||||||||||||||||||||||| || || || || |||
Sbjct 138 TGCTCGGCCTGTCCGGCGGCGTTGACTCCTCCGTGGTTGCCGCGCTG 184
>seq2787855
Length=229
Score = 131 bits (144), Expect = 1e-28
Identities = 93/107 (87%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1 CGAAAATTGCTGAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTAT 60
||||||| |||||||| ||||||||| | ||||| |||||||| || || ||||||||||
Sbjct 123 CGAAAATCGCTGAAGACGCCATCGCCAACGTGCGTGCCCAGGTGGGTACCGACAACGTAT 182
Query 61 TGCTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTG 107
|||| |||||||||||||||||||||||||| || || || || |||
Sbjct 183 TGCTCGGCCTGTCCGGCGGCGTTGACTCCTCCGTGGTTGCCGCGCTG 229
>seq2890403
Length=316
Score = 100 bits (110), Expect = 2e-19
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 74 CGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACT 133
|||||||||||||||||| || || || || ||||||||||| |||||||||||||| ||
Sbjct 1 CGGCGGCGTTGACTCCTCCGTGGTTGCCGCGCTGCTGCACAAAGCCATCGGCGACCAGCT 60
Query 134 GACCTGCGTGTTTGTCGA 151
||| |||||||| |||||
Sbjct 61 GACGTGCGTGTTCGTCGA 78
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 375988705070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |