Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001383.1
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
seq3053845 619 4e-175
seq360429 428 1e-117
seq2898241 349 1e-93
seq2885579 309 1e-81
seq2885580 297 6e-78
seq2186828 185 3e-44
seq659143 159 1e-36
seq854157 105 2e-20
seq2092971 80.6 9e-13
>seq3053845
Length=1211
Score = 619 bits (686), Expect = 4e-175
Identities = 476/562 (85%), Gaps = 2/562 (0%)
Strand=Plus/Plus
Query 1 TCGACCCTGATTTTAAACACGGTCTGGGCATATTTGCGCCCAATCCCACTTTATAGTGCT 60
||||||| || ||| || |||| ||| ||||||| || ||||||| | || ||
Sbjct 626 TCGACCCAGAAATTACCCAAGGTCGTGGCGGATTTGCGACCGATCCCACGGCAAAGCGCG 685
Query 61 TACCATCACGGACAGGACTGTCGCGTTGTTGACGAAGTTCTGCTCCGTGAGGACGGCCAT 120
|||| || | |||| | || ||| |||||||||||||| | |||||| || ||||
Sbjct 686 -ACCAGGACTGCCAGGCCGGTGGCGGCACTGACGAAGTTCTGCACGGTGAGGCCGACCAT 744
Query 121 CTGACTTAGATAATTTAAGGACGCCTCACCGCTGTTGTTCTGCCAGTTGGTATTGGTCAT 180
||| || |||||| | | ||| || || ||||||| ||||||||||||||||||||||||
Sbjct 745 CTGGCTGAGATAACTCAGGGAGGCTTCGCCGCTGTAGTTCTGCCAGTTGGTATTGGTCAT 804
Query 181 GAAACTGACGGCGGTATTAAACGCCTAGGTCCATTCCTGGCCCGGCAGGTTTTGCGGGTT 240
||||||||| || || || |||||| ||||||||||||||||||| || ||||||||
Sbjct 805 GAAACTGACCGCTGTGTTGAACGCCAGCGTCCATTCCTGGCCCGGCAATTTCTGCGGGTT 864
Query 241 CAGCGGGAGGGAGCCTTGAAATAACAGAATAGAGAACAGCAGCAGGAAGCCGGCGAGGTT 300
|| |||||| || | || ||||||||||| ||||||| ||| | |||||| || |||||
Sbjct 865 GAGTGGGAGGTAGTCCTGGAATAACAGAATCGAGAACAACAGTAAGAAGCCCGCAAGGTT 924
Query 301 GAATGCGAGCAAGGCCAGCATGTACTTCTGCCAGCTTTGTTCCTGCTGTGCGTCCACACC 360
||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||
Sbjct 925 GAACGCGAGCAAGGCCAGCATGTATTTCTGCCAGCTCTGTTCCTGCTGGGCGTCTACGCC 984
Query 361 CGACAGGCGATAACAGGCGCTTTCCACCGGCCCCAGCACCGGGCTGAGCCAGGTGCGCTG 420
||||||||||||||||||| ||||||||||||||| ||||| | | ||||||||||||
Sbjct 985 CGACAGGCGATAACAGGCGTTTTCCACCGGCCCCAAAACCGGCGTCAACCAGGTGCGCTG 1044
Query 421 GCCCTCCATCACCTTGTAGTAGAACCGCCCCAGGAACGGAGTCGGCACCAGTACCACGGC 480
|| |||||||||||||| |||||||||||||| ||||| | ||||||||||||||||||
Sbjct 1045 ACCTTCCATCACCTTGTAATAGAACCGCCCCAGAAACGGTGCCGGCACCAGTACCACGGC 1104
Query 481 AAAGAAGGCGATGATCAGCCAATAGTCATAACTGTGCATAG-CCGCTCCTAGTTCCGATC 539
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1105 GAAGAAGGCGATGATCAGCCAATAGTCATAACTGTGCATAGCCCGCTCCTAGTTCCGATC 1164
Query 540 CGCGCGTAACAGCGCAACCAGC 561
||||||||||||||||||||||
Sbjct 1165 CGCGCGTAACAGCGCAACCAGC 1186
>seq360429
Length=739
Score = 428 bits (474), Expect = 1e-117
Identities = 386/484 (80%), Gaps = 1/484 (0%)
Strand=Plus/Plus
Query 1 TCGACCCTGATTTTAAACACGGTCTGGGCATATTTGCGCCCAATCCCACTTTATAGTGCT 60
||||||| || || || ||||| || | |||||||| || |||| | || ||
Sbjct 257 TCGACCCAGAAGTTGCCCAAGGTCTTGGTGGACTTGCGCCCGATACCACGGCACAGCGCG 316
Query 61 TACCATCACGGACAGGACTGTCGCGTTGTTGACGAAGTTCTGCTCCGTGAGGACGGCCAT 120
|||| ||| | |||| | || ||| | |||||||||||||| | |||||| || |||
Sbjct 317 -ACCAGCACAGCCAGGCCGGTGGCGGCGCTGACGAAGTTCTGCACGGTGAGGCCGATCAT 375
Query 121 CTGACTTAGATAATTTAAGGACGCCTCACCGCTGTTGTTCTGCCAGTTGGTATTGGTCAT 180
||| || || || | | ||| || |||||||||| ||||||||||||||||||||||||
Sbjct 376 CTGGCTGAGGTAGCTCAGGGAGGCTTCACCGCTGTAGTTCTGCCAGTTGGTATTGGTCAT 435
Query 181 GAAACTGACGGCGGTATTAAACGCCTAGGTCCATTCCTGGCCCGGCAGGTTTTGCGGGTT 240
||||||||||||||| || || ||| ||||||||||| ||||||| || ||||||||
Sbjct 436 GAAACTGACGGCGGTGTTGAAGGCCAGCGTCCATTCCTGACCCGGCAATTTCTGCGGGTT 495
Query 241 CAGCGGGAGGGAGCCTTGAAATAACAGAATAGAGAACAGCAGCAGGAAGCCGGCGAGGTT 300
|| || ||| | | || || ||||| | | |||||||| || || ||||| |||||
Sbjct 496 GAGTGGCAGGTATTCCTGGAACAACAGTACCGCGAACAGCAACACAAAACCGGCCAGGTT 555
Query 301 GAATGCGAGCAAGGCCAGCATGTACTTCTGCCAGCTTTGTTCCTGCTGTGCGTCCACACC 360
||| || |||| |||||| |||| ||||||||||| |||||||| || ||||||| ||
Sbjct 556 GAACGCCAGCAGCGCCAGCGTGTATTTCTGCCAGCTCTGTTCCTGGTGCTCGTCCACGCC 615
Query 361 CGACAGGCGATAACAGGCGCTTTCCACCGGCCCCAGCACCGGGCTGAGCCAGGTGCGCTG 420
|||||||||||||| |||| || ||||| || |||||||| |||||||||||||||
Sbjct 616 GGACAGGCGATAACACGCGCGCTCGACCGGGCCGAGCACCGGCGAGAGCCAGGTGCGCTG 675
Query 421 GCCCTCCATCACCTTGTAGTAGAACCGCCCCAGGAACGGAGTCGGCACCAGTACCACGGC 480
||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 676 GCCTTCCATCACCTTGTAGTAGAACCGCCCCAGGAACGGTGCCGGCACCAGCACCACGGC 735
Query 481 AAAG 484
||||
Sbjct 736 AAAG 739
>seq2898241
Length=328
Score = 349 bits (386), Expect = 1e-93
Identities = 274/328 (84%), Gaps = 0/328 (0%)
Strand=Plus/Minus
Query 157 GTTCTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGTCCATTC 216
||||||||||||||| ||||||||||||||||| ||||| || || ||| ||||||||
Sbjct 328 GTTCTGCCAGTTGGTGTTGGTCATGAAACTGACCGCGGTGTTGAAGGCCAGCGTCCATTC 269
Query 217 CTGGCCCGGCAGGTTTTGCGGGTTCAGCGGGAGGGAGCCTTGAAATAACAGAATAGAGAA 276
||| ||||||| || |||||||| || || || | | || || ||||| | | |||
Sbjct 268 CTGCCCCGGCAATTTCTGCGGGTTGAGTGGTAGATATTCCTGGAACAACAGCACGGCGAA 209
Query 277 CAGCAGCAGGAAGCCGGCGAGGTTGAATGCGAGCAAGGCCAGCATGTACTTCTGCCAGCT 336
||||| || ||| ||||| |||||||| || |||| |||||| ||||||||||||||||
Sbjct 208 CAGCAACACGAAACCGGCCAGGTTGAACGCCAGCAGCGCCAGCGTGTACTTCTGCCAGCT 149
Query 337 TTGTTCCTGCTGTGCGTCCACACCCGACAGGCGATAACAGGCGCTTTCCACCGGCCCCAG 396
|||||||| || ||||||| || ||||||||||||||||||| || ||||| || ||
Sbjct 148 CTGTTCCTGGTGCTCGTCCACCCCGGACAGGCGATAACAGGCGCGCTCGACCGGGCCGAG 89
Query 397 CACCGGGCTGAGCCAGGTGCGCTGGCCCTCCATCACCTTGTAGTAGAACCGCCCCAGGAA 456
|||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 88 CACCGGCGAGAGCCAGGTGCGCTGACCTTCCATCACCTTGTAGTAGAACCGCCCCAGGAA 29
Query 457 CGGAGTCGGCACCAGTACCACGGCAAAG 484
||| | ||||||||| ||||||||||||
Sbjct 28 CGGTGCCGGCACCAGCACCACGGCAAAG 1
>seq2885579
Length=309
Score = 309 bits (342), Expect = 1e-81
Identities = 254/309 (82%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 160 CTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGTCCATTCCTG 219
|||||||||||| ||||||||||||||||| ||||| || || ||| |||||||||||
Sbjct 1 CTGCCAGTTGGTGTTGGTCATGAAACTGACCGCGGTGTTGAAGGCCAGCGTCCATTCCTG 60
Query 220 GCCCGGCAGGTTTTGCGGGTTCAGCGGGAGGGAGCCTTGAAATAACAGAATAGAGAACAG 279
||||||| || ||||||||||| || ||| | | || || ||||| | || ||||||
Sbjct 61 ACCCGGCAATTTCTGCGGGTTCAGTGGCAGGTATTCCTGGAACAACAGCACAGCGAACAG 120
Query 280 CAGCAGGAAGCCGGCGAGGTTGAATGCGAGCAAGGCCAGCATGTACTTCTGCCAGCTTTG 339
|| || ||| ||||| || ||||| || | || |||||| |||||||||||||||| ||
Sbjct 121 CAACACGAAACCGGCCAGATTGAACGCCAACAGCGCCAGCGTGTACTTCTGCCAGCTCTG 180
Query 340 TTCCTGCTGTGCGTCCACACCCGACAGGCGATAACAGGCGCTTTCCACCGGCCCCAGCAC 399
|||||| || ||||||| || |||||||||||||| |||| || ||||| || |||||
Sbjct 181 TTCCTGATGCTCGTCCACGCCGGACAGGCGATAACACGCGCGCTCAACCGGGCCGAGCAC 240
Query 400 CGGGCTGAGCCAGGTGCGCTGGCCCTCCATCACCTTGTAGTAGAACCGCCCCAGGAACGG 459
||| |||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct 241 CGGCGCGAGCCAGGTGCGCTGGCCTTCCATCACCTTGTAATAGAACCTTCCCAGGAACGG 300
Query 460 AGTCGGCAC 468
| ||||||
Sbjct 301 TGCCGGCAC 309
>seq2885580
Length=309
Score = 297 bits (328), Expect = 6e-78
Identities = 251/309 (81%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 160 CTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGTCCATTCCTG 219
|||||||||||| ||||||||||||||||| ||||| || || ||| |||||||||||
Sbjct 1 CTGCCAGTTGGTGTTGGTCATGAAACTGACCGCGGTGTTGAAGGCCAGCGTCCATTCCTG 60
Query 220 GCCCGGCAGGTTTTGCGGGTTCAGCGGGAGGGAGCCTTGAAATAACAGAATAGAGAACAG 279
|| |||| || |||||||| || || || | | || || ||||| | || ||||||
Sbjct 61 ACCTGGCAATTTCTGCGGGTTGAGTGGCAGATATTCCTGGAACAACAGCACAGCGAACAG 120
Query 280 CAGCAGGAAGCCGGCGAGGTTGAATGCGAGCAAGGCCAGCATGTACTTCTGCCAGCTTTG 339
|| || ||| ||||| || ||||| || | | |||||| |||||||||||||||| ||
Sbjct 121 CAACACGAAACCGGCCAGATTGAACGCCAATAGCGCCAGCGTGTACTTCTGCCAGCTCTG 180
Query 340 TTCCTGCTGTGCGTCCACACCCGACAGGCGATAACAGGCGCTTTCCACCGGCCCCAGCAC 399
|||||| ||| | ||||| || |||||||||||||| |||| || ||||| || |||||
Sbjct 181 TTCCTGGTGTTCATCCACGCCAGACAGGCGATAACACGCGCGCTCAACCGGGCCGAGCAC 240
Query 400 CGGGCTGAGCCAGGTGCGCTGGCCCTCCATCACCTTGTAGTAGAACCGCCCCAGGAACGG 459
||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct 241 CGGCGTGAGCCAGGTGCGCTGGCCTTCCATCACCTTGTAATAGAACCTTCCCAGGAACGG 300
Query 460 AGTCGGCAC 468
| ||||||
Sbjct 301 TGCCGGCAC 309
>seq2186828
Length=128
Score = 185 bits (204), Expect = 3e-44
Identities = 110/114 (96%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 449 CCCAGGAACGGAGTCGGCACCAGTACCACGGCAAAGAAGGCGATGATCAGCCAATAGTCA 508
||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 CCCAGGAACGGTGCCGGCACCAGCACCACGGCAAAGAAGGCGATGATCAGCCAATAGTCA 60
Query 509 TAACTGTGCATAGCC-GCTCCTAGTTCCGATCCGCGCGTAACAGCGCAACCAGC 561
||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAACTGTGCATAGCCTGCTCCTAGTTCCGATCCGCGCGTAACAGCGCAACCAGC 114
>seq659143
Length=106
Score = 159 bits (176), Expect = 1e-36
Identities = 99/106 (93%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 406 GAGCCAGGTGCGCTGGCCCTCCATCACCTTGTAGTAGAACCGCCCCAGGAACGGAGTCGG 465
|||||||||||||||||| |||||||||||||| ||||||| ||||||||||| | |||
Sbjct 106 GAGCCAGGTGCGCTGGCCTTCCATCACCTTGTAATAGAACCTTCCCAGGAACGGTGCCGG 47
Query 466 CACCAGTACCACGGCAAAGAAGGCGATGATCAGCCAATAGTCATAA 511
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 46 CACCAGCACCACGGCAAAGAAGGCGATGATCAGCCAATAGTCATAA 1
>seq854157
Length=111
Score = 105 bits (116), Expect = 2e-20
Identities = 90/111 (81%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 109 GAGGACGGCCATCTGACTTAGATAATTTAAGGACGCCTCACCGCTGTTGTTCTGCCAGTT 168
|||| || |||||| || || || | | ||| || |||||||||| ||||||||||||
Sbjct 1 GAGGCCGATCATCTGGCTGAGGTAGCTCAGGGAGGCTTCACCGCTGTAGTTCTGCCAGTT 60
Query 169 GGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGTCCATTCCTG 219
||| ||||||||||||||||| ||||| || || ||| |||||||||||
Sbjct 61 GGTGTTGGTCATGAAACTGACCGCGGTGTTGAAGGCCAGCGTCCATTCCTG 111
>seq2092971
Length=127
Score = 80.6 bits (88), Expect = 9e-13
Identities = 48/49 (98%), Gaps = 1/49 (2%)
Strand=Plus/Minus
Query 514 GTGCATAGCC-GCTCCTAGTTCCGATCCGCGCGTAACAGCGCAACCAGC 561
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 127 GTGCATAGCCTGCTCCTAGTTCCGATCCGCGCGTAACAGCGCAACCAGC 79
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1640517685792
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