Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001383.1 Length=561 Score E Sequences producing significant alignments: (Bits) Value seq3053845 619 4e-175 seq360429 428 1e-117 seq2898241 349 1e-93 seq2885579 309 1e-81 seq2885580 297 6e-78 seq2186828 185 3e-44 seq659143 159 1e-36 seq854157 105 2e-20 seq2092971 80.6 9e-13 >seq3053845 Length=1211 Score = 619 bits (686), Expect = 4e-175 Identities = 476/562 (85%), Gaps = 2/562 (0%) Strand=Plus/Plus Query 1 TCGACCCTGATTTTAAACACGGTCTGGGCATATTTGCGCCCAATCCCACTTTATAGTGCT 60 ||||||| || ||| || |||| ||| ||||||| || ||||||| | || || Sbjct 626 TCGACCCAGAAATTACCCAAGGTCGTGGCGGATTTGCGACCGATCCCACGGCAAAGCGCG 685 Query 61 TACCATCACGGACAGGACTGTCGCGTTGTTGACGAAGTTCTGCTCCGTGAGGACGGCCAT 120 |||| || | |||| | || ||| |||||||||||||| | |||||| || |||| Sbjct 686 -ACCAGGACTGCCAGGCCGGTGGCGGCACTGACGAAGTTCTGCACGGTGAGGCCGACCAT 744 Query 121 CTGACTTAGATAATTTAAGGACGCCTCACCGCTGTTGTTCTGCCAGTTGGTATTGGTCAT 180 ||| || |||||| | | ||| || || ||||||| |||||||||||||||||||||||| Sbjct 745 CTGGCTGAGATAACTCAGGGAGGCTTCGCCGCTGTAGTTCTGCCAGTTGGTATTGGTCAT 804 Query 181 GAAACTGACGGCGGTATTAAACGCCTAGGTCCATTCCTGGCCCGGCAGGTTTTGCGGGTT 240 ||||||||| || || || |||||| ||||||||||||||||||| || |||||||| Sbjct 805 GAAACTGACCGCTGTGTTGAACGCCAGCGTCCATTCCTGGCCCGGCAATTTCTGCGGGTT 864 Query 241 CAGCGGGAGGGAGCCTTGAAATAACAGAATAGAGAACAGCAGCAGGAAGCCGGCGAGGTT 300 || |||||| || | || ||||||||||| ||||||| ||| | |||||| || ||||| Sbjct 865 GAGTGGGAGGTAGTCCTGGAATAACAGAATCGAGAACAACAGTAAGAAGCCCGCAAGGTT 924 Query 301 GAATGCGAGCAAGGCCAGCATGTACTTCTGCCAGCTTTGTTCCTGCTGTGCGTCCACACC 360 ||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||| || || Sbjct 925 GAACGCGAGCAAGGCCAGCATGTATTTCTGCCAGCTCTGTTCCTGCTGGGCGTCTACGCC 984 Query 361 CGACAGGCGATAACAGGCGCTTTCCACCGGCCCCAGCACCGGGCTGAGCCAGGTGCGCTG 420 ||||||||||||||||||| ||||||||||||||| ||||| | | |||||||||||| Sbjct 985 CGACAGGCGATAACAGGCGTTTTCCACCGGCCCCAAAACCGGCGTCAACCAGGTGCGCTG 1044 Query 421 GCCCTCCATCACCTTGTAGTAGAACCGCCCCAGGAACGGAGTCGGCACCAGTACCACGGC 480 || |||||||||||||| |||||||||||||| ||||| | |||||||||||||||||| Sbjct 1045 ACCTTCCATCACCTTGTAATAGAACCGCCCCAGAAACGGTGCCGGCACCAGTACCACGGC 1104 Query 481 AAAGAAGGCGATGATCAGCCAATAGTCATAACTGTGCATAG-CCGCTCCTAGTTCCGATC 539 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1105 GAAGAAGGCGATGATCAGCCAATAGTCATAACTGTGCATAGCCCGCTCCTAGTTCCGATC 1164 Query 540 CGCGCGTAACAGCGCAACCAGC 561 |||||||||||||||||||||| Sbjct 1165 CGCGCGTAACAGCGCAACCAGC 1186 >seq360429 Length=739 Score = 428 bits (474), Expect = 1e-117 Identities = 386/484 (80%), Gaps = 1/484 (0%) Strand=Plus/Plus Query 1 TCGACCCTGATTTTAAACACGGTCTGGGCATATTTGCGCCCAATCCCACTTTATAGTGCT 60 ||||||| || || || ||||| || | |||||||| || |||| | || || Sbjct 257 TCGACCCAGAAGTTGCCCAAGGTCTTGGTGGACTTGCGCCCGATACCACGGCACAGCGCG 316 Query 61 TACCATCACGGACAGGACTGTCGCGTTGTTGACGAAGTTCTGCTCCGTGAGGACGGCCAT 120 |||| ||| | |||| | || ||| | |||||||||||||| | |||||| || ||| Sbjct 317 -ACCAGCACAGCCAGGCCGGTGGCGGCGCTGACGAAGTTCTGCACGGTGAGGCCGATCAT 375 Query 121 CTGACTTAGATAATTTAAGGACGCCTCACCGCTGTTGTTCTGCCAGTTGGTATTGGTCAT 180 ||| || || || | | ||| || |||||||||| |||||||||||||||||||||||| Sbjct 376 CTGGCTGAGGTAGCTCAGGGAGGCTTCACCGCTGTAGTTCTGCCAGTTGGTATTGGTCAT 435 Query 181 GAAACTGACGGCGGTATTAAACGCCTAGGTCCATTCCTGGCCCGGCAGGTTTTGCGGGTT 240 ||||||||||||||| || || ||| ||||||||||| ||||||| || |||||||| Sbjct 436 GAAACTGACGGCGGTGTTGAAGGCCAGCGTCCATTCCTGACCCGGCAATTTCTGCGGGTT 495 Query 241 CAGCGGGAGGGAGCCTTGAAATAACAGAATAGAGAACAGCAGCAGGAAGCCGGCGAGGTT 300 || || ||| | | || || ||||| | | |||||||| || || ||||| ||||| Sbjct 496 GAGTGGCAGGTATTCCTGGAACAACAGTACCGCGAACAGCAACACAAAACCGGCCAGGTT 555 Query 301 GAATGCGAGCAAGGCCAGCATGTACTTCTGCCAGCTTTGTTCCTGCTGTGCGTCCACACC 360 ||| || |||| |||||| |||| ||||||||||| |||||||| || ||||||| || Sbjct 556 GAACGCCAGCAGCGCCAGCGTGTATTTCTGCCAGCTCTGTTCCTGGTGCTCGTCCACGCC 615 Query 361 CGACAGGCGATAACAGGCGCTTTCCACCGGCCCCAGCACCGGGCTGAGCCAGGTGCGCTG 420 |||||||||||||| |||| || ||||| || |||||||| ||||||||||||||| Sbjct 616 GGACAGGCGATAACACGCGCGCTCGACCGGGCCGAGCACCGGCGAGAGCCAGGTGCGCTG 675 Query 421 GCCCTCCATCACCTTGTAGTAGAACCGCCCCAGGAACGGAGTCGGCACCAGTACCACGGC 480 ||| ||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct 676 GCCTTCCATCACCTTGTAGTAGAACCGCCCCAGGAACGGTGCCGGCACCAGCACCACGGC 735 Query 481 AAAG 484 |||| Sbjct 736 AAAG 739 >seq2898241 Length=328 Score = 349 bits (386), Expect = 1e-93 Identities = 274/328 (84%), Gaps = 0/328 (0%) Strand=Plus/Minus Query 157 GTTCTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGTCCATTC 216 ||||||||||||||| ||||||||||||||||| ||||| || || ||| |||||||| Sbjct 328 GTTCTGCCAGTTGGTGTTGGTCATGAAACTGACCGCGGTGTTGAAGGCCAGCGTCCATTC 269 Query 217 CTGGCCCGGCAGGTTTTGCGGGTTCAGCGGGAGGGAGCCTTGAAATAACAGAATAGAGAA 276 ||| ||||||| || |||||||| || || || | | || || ||||| | | ||| Sbjct 268 CTGCCCCGGCAATTTCTGCGGGTTGAGTGGTAGATATTCCTGGAACAACAGCACGGCGAA 209 Query 277 CAGCAGCAGGAAGCCGGCGAGGTTGAATGCGAGCAAGGCCAGCATGTACTTCTGCCAGCT 336 ||||| || ||| ||||| |||||||| || |||| |||||| |||||||||||||||| Sbjct 208 CAGCAACACGAAACCGGCCAGGTTGAACGCCAGCAGCGCCAGCGTGTACTTCTGCCAGCT 149 Query 337 TTGTTCCTGCTGTGCGTCCACACCCGACAGGCGATAACAGGCGCTTTCCACCGGCCCCAG 396 |||||||| || ||||||| || ||||||||||||||||||| || ||||| || || Sbjct 148 CTGTTCCTGGTGCTCGTCCACCCCGGACAGGCGATAACAGGCGCGCTCGACCGGGCCGAG 89 Query 397 CACCGGGCTGAGCCAGGTGCGCTGGCCCTCCATCACCTTGTAGTAGAACCGCCCCAGGAA 456 |||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 88 CACCGGCGAGAGCCAGGTGCGCTGACCTTCCATCACCTTGTAGTAGAACCGCCCCAGGAA 29 Query 457 CGGAGTCGGCACCAGTACCACGGCAAAG 484 ||| | ||||||||| |||||||||||| Sbjct 28 CGGTGCCGGCACCAGCACCACGGCAAAG 1 >seq2885579 Length=309 Score = 309 bits (342), Expect = 1e-81 Identities = 254/309 (82%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 160 CTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGTCCATTCCTG 219 |||||||||||| ||||||||||||||||| ||||| || || ||| ||||||||||| Sbjct 1 CTGCCAGTTGGTGTTGGTCATGAAACTGACCGCGGTGTTGAAGGCCAGCGTCCATTCCTG 60 Query 220 GCCCGGCAGGTTTTGCGGGTTCAGCGGGAGGGAGCCTTGAAATAACAGAATAGAGAACAG 279 ||||||| || ||||||||||| || ||| | | || || ||||| | || |||||| Sbjct 61 ACCCGGCAATTTCTGCGGGTTCAGTGGCAGGTATTCCTGGAACAACAGCACAGCGAACAG 120 Query 280 CAGCAGGAAGCCGGCGAGGTTGAATGCGAGCAAGGCCAGCATGTACTTCTGCCAGCTTTG 339 || || ||| ||||| || ||||| || | || |||||| |||||||||||||||| || Sbjct 121 CAACACGAAACCGGCCAGATTGAACGCCAACAGCGCCAGCGTGTACTTCTGCCAGCTCTG 180 Query 340 TTCCTGCTGTGCGTCCACACCCGACAGGCGATAACAGGCGCTTTCCACCGGCCCCAGCAC 399 |||||| || ||||||| || |||||||||||||| |||| || ||||| || ||||| Sbjct 181 TTCCTGATGCTCGTCCACGCCGGACAGGCGATAACACGCGCGCTCAACCGGGCCGAGCAC 240 Query 400 CGGGCTGAGCCAGGTGCGCTGGCCCTCCATCACCTTGTAGTAGAACCGCCCCAGGAACGG 459 ||| |||||||||||||||||| |||||||||||||| ||||||| ||||||||||| Sbjct 241 CGGCGCGAGCCAGGTGCGCTGGCCTTCCATCACCTTGTAATAGAACCTTCCCAGGAACGG 300 Query 460 AGTCGGCAC 468 | |||||| Sbjct 301 TGCCGGCAC 309 >seq2885580 Length=309 Score = 297 bits (328), Expect = 6e-78 Identities = 251/309 (81%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 160 CTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGTCCATTCCTG 219 |||||||||||| ||||||||||||||||| ||||| || || ||| ||||||||||| Sbjct 1 CTGCCAGTTGGTGTTGGTCATGAAACTGACCGCGGTGTTGAAGGCCAGCGTCCATTCCTG 60 Query 220 GCCCGGCAGGTTTTGCGGGTTCAGCGGGAGGGAGCCTTGAAATAACAGAATAGAGAACAG 279 || |||| || |||||||| || || || | | || || ||||| | || |||||| Sbjct 61 ACCTGGCAATTTCTGCGGGTTGAGTGGCAGATATTCCTGGAACAACAGCACAGCGAACAG 120 Query 280 CAGCAGGAAGCCGGCGAGGTTGAATGCGAGCAAGGCCAGCATGTACTTCTGCCAGCTTTG 339 || || ||| ||||| || ||||| || | | |||||| |||||||||||||||| || Sbjct 121 CAACACGAAACCGGCCAGATTGAACGCCAATAGCGCCAGCGTGTACTTCTGCCAGCTCTG 180 Query 340 TTCCTGCTGTGCGTCCACACCCGACAGGCGATAACAGGCGCTTTCCACCGGCCCCAGCAC 399 |||||| ||| | ||||| || |||||||||||||| |||| || ||||| || ||||| Sbjct 181 TTCCTGGTGTTCATCCACGCCAGACAGGCGATAACACGCGCGCTCAACCGGGCCGAGCAC 240 Query 400 CGGGCTGAGCCAGGTGCGCTGGCCCTCCATCACCTTGTAGTAGAACCGCCCCAGGAACGG 459 ||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| Sbjct 241 CGGCGTGAGCCAGGTGCGCTGGCCTTCCATCACCTTGTAATAGAACCTTCCCAGGAACGG 300 Query 460 AGTCGGCAC 468 | |||||| Sbjct 301 TGCCGGCAC 309 >seq2186828 Length=128 Score = 185 bits (204), Expect = 3e-44 Identities = 110/114 (96%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 449 CCCAGGAACGGAGTCGGCACCAGTACCACGGCAAAGAAGGCGATGATCAGCCAATAGTCA 508 ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 CCCAGGAACGGTGCCGGCACCAGCACCACGGCAAAGAAGGCGATGATCAGCCAATAGTCA 60 Query 509 TAACTGTGCATAGCC-GCTCCTAGTTCCGATCCGCGCGTAACAGCGCAACCAGC 561 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 61 TAACTGTGCATAGCCTGCTCCTAGTTCCGATCCGCGCGTAACAGCGCAACCAGC 114 >seq659143 Length=106 Score = 159 bits (176), Expect = 1e-36 Identities = 99/106 (93%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 406 GAGCCAGGTGCGCTGGCCCTCCATCACCTTGTAGTAGAACCGCCCCAGGAACGGAGTCGG 465 |||||||||||||||||| |||||||||||||| ||||||| ||||||||||| | ||| Sbjct 106 GAGCCAGGTGCGCTGGCCTTCCATCACCTTGTAATAGAACCTTCCCAGGAACGGTGCCGG 47 Query 466 CACCAGTACCACGGCAAAGAAGGCGATGATCAGCCAATAGTCATAA 511 |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 46 CACCAGCACCACGGCAAAGAAGGCGATGATCAGCCAATAGTCATAA 1 >seq854157 Length=111 Score = 105 bits (116), Expect = 2e-20 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 109 GAGGACGGCCATCTGACTTAGATAATTTAAGGACGCCTCACCGCTGTTGTTCTGCCAGTT 168 |||| || |||||| || || || | | ||| || |||||||||| |||||||||||| Sbjct 1 GAGGCCGATCATCTGGCTGAGGTAGCTCAGGGAGGCTTCACCGCTGTAGTTCTGCCAGTT 60 Query 169 GGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGTCCATTCCTG 219 ||| ||||||||||||||||| ||||| || || ||| ||||||||||| Sbjct 61 GGTGTTGGTCATGAAACTGACCGCGGTGTTGAAGGCCAGCGTCCATTCCTG 111 >seq2092971 Length=127 Score = 80.6 bits (88), Expect = 9e-13 Identities = 48/49 (98%), Gaps = 1/49 (2%) Strand=Plus/Minus Query 514 GTGCATAGCC-GCTCCTAGTTCCGATCCGCGCGTAACAGCGCAACCAGC 561 |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 127 GTGCATAGCCTGCTCCTAGTTCCGATCCGCGCGTAACAGCGCAACCAGC 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1640517685792