Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001416.1 Length=341 Score E Sequences producing significant alignments: (Bits) Value seq3022995 515 8e-144 seq3077726 502 5e-140 seq168358 502 5e-140 seq2435818 257 3e-66 seq2575211 232 1e-58 seq2300676 230 4e-58 seq2195024 208 1e-51 seq2894397 172 1e-40 >seq3022995 Length=829 Score = 515 bits (570), Expect = 8e-144 Identities = 319/340 (94%), Gaps = 1/340 (0%) Strand=Plus/Minus Query 1 CGACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGAT 60 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 625 CGACTTGAGCTTGCTTGCCACCGGCAACAACACCAGGTTGGCACTCGCCACGCCGTAGAT 566 Query 61 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCC 120 ||| |||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct 565 GGTCGCGACAAAGGCCACGGCAATGCCGCTGCCCAGCTGCGACGGGTCGGCCAGGTTGCC 506 Query 121 CATCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCC 180 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 505 CATCACGTGGATAAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCATAGCCGCC 446 Query 181 CATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCA 240 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 445 CATGCTTTCAAAGACTTTGGCGGCGTTGATATCACGGCTTTCCTGGGT-GTAGAAATCCA 387 Query 241 CTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTT 300 ||||| ||| ||||||||||| || || || ||||| || ||||||||||||||||||| Sbjct 386 CTTCCAGAATGCTGCGAATCGCCTCGGGTTCAGCGCCATCAACCAGCAGTTGCAGGCCTT 327 Query 301 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 340 ||||||| |||||||||||||||||||||||||||||||| Sbjct 326 TGCGCGCATAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 287 >seq3077726 Length=1981 Score = 502 bits (556), Expect = 5e-140 Identities = 316/340 (93%), Gaps = 1/340 (0%) Strand=Plus/Minus Query 1 CGACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGAT 60 |||||||||||||||||||||||||| || |||||||||||| || |||||||| ||||| Sbjct 670 CGACTTGAGCTTGCTCGCCACCGGCAGCAGCACCAGGTTGGCGCTCGCCACGCCATAGAT 611 Query 61 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCC 120 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 610 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCCAGGTTGCC 551 Query 121 CATCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCC 180 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 550 CATCACGTGGATCAGGCCCATCACCGCGCCGATGATGCCGATGGTCGGCGCGTAGCCGCC 491 Query 181 CATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCA 240 |||||||||||| |||||||| || ||||| || |||||||||||||| ||||||||||| Sbjct 490 CATGCTTTCAAACACTTTGGCCGCATTGATGTCACGGCTTTCCTGGGT-GTAGAAATCCA 432 Query 241 CTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTT 300 | || | | ||||| ||||||||||||||||||||||||||||||||||||| ||| | Sbjct 431 CCTCGAGGATGCTGCGGATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAAGCCCT 372 Query 301 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 340 |||| || |||||||||||||||||||||||||||||||| Sbjct 371 TGCGTGCATAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 332 >seq168358 Length=3320 Score = 502 bits (556), Expect = 5e-140 Identities = 316/340 (93%), Gaps = 1/340 (0%) Strand=Plus/Plus Query 1 CGACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGAT 60 ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1738 CGATTTGAGCTTGCTGGCCACCGGCAACAACACCAGGTTGGCACTCGCCACGCCGTAAAT 1797 Query 61 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCC 120 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct 1798 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGCTGCGACGGGTCGGCCAGGTTGCC 1857 Query 121 CATCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCC 180 ||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1858 CATCACGCGGATCAGGCCCATCACTGCACCGATGATGCCGATGGTCGGTGCGTAGCCGCC 1917 Query 181 CATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCA 240 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1918 CATGCTTTCAAAGACTTTGGCGGCGTTGATGTCGCGGCTTTCCTGGGT-GTAGAAATCCA 1976 Query 241 CTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTT 300 | || | | ||||||||||| || || |||||||| || ||||||||||||| ||||| Sbjct 1977 CCTCAAGGATGCTGCGAATCGCCTCGGGTTCGGCGCCATCGACCAGCAGTTGCAAGCCTT 2036 Query 301 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 340 |||||||||||||||||||||||||||||||||||||||| Sbjct 2037 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 2076 >seq2435818 Length=157 Score = 257 bits (284), Expect = 3e-66 Identities = 151/157 (96%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43 ACTGGCCACGCCGTAGATGGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGA 102 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 157 ACTCGCCACGCCGTAGATGGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGCTGCGA 98 Query 103 AGGGTCGGCGAGGTTGCCCATCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGAT 162 || ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 97 CGGATCGGCCAGGTTGCCCATCACGTGGATCAAGCCCATCACCGCACCGATGATGCCGAT 38 Query 163 GGTCGGCGCGTAGCCGCCCATGCTTTCAAAGACTTTG 199 ||||||||||||||||||||||||||||||||||||| Sbjct 37 GGTCGGCGCGTAGCCGCCCATGCTTTCAAAGACTTTG 1 >seq2575211 Length=177 Score = 232 bits (256), Expect = 1e-58 Identities = 148/160 (93%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 181 CATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCA 240 |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 177 CATGCTTTCAAAGACTTTGGCGGCGTTGATGTCGCGGCTTTCCTGGGTG-TAGAAATCCA 119 Query 241 CTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTT 300 | || | | ||||| ||||| ||||| ||||||||||||||||||| ||||||||||| Sbjct 118 CCTCGAGGATGCTGCGGATCGCCTCCGGTTCGGCGCCGTCCACCAGCAATTGCAGGCCTT 59 Query 301 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 340 |||||||||||||||||||||||||||||||||||||||| Sbjct 58 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 19 >seq2300676 Length=137 Score = 230 bits (254), Expect = 4e-58 Identities = 133/137 (97%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 72 ACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCCCATCACGTGGA 131 ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| Sbjct 1 ACGCCACGGCAATGCCGCTGCCCAGCTGCGACGGGTCGGCCAGGTTGCCCATCACGTGGA 60 Query 132 TCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCATGCTTTCAA 191 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCAGGCCCATCACTGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCATGCTTTCAA 120 Query 192 AGACTTTGGCGGCGTTG 208 ||||||||||||||||| Sbjct 121 AGACTTTGGCGGCGTTG 137 >seq2195024 Length=128 Score = 208 bits (230), Expect = 1e-51 Identities = 123/128 (96%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 72 ACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCCCATCACGTGGA 131 ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| Sbjct 128 ACGCCACGGCAATGCCGCTGCCCAGCTGCGACGGGTCGGCCAGGTTGCCCATCACGTGGA 69 Query 132 TCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCATGCTTTCAA 191 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 68 TCAAACCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCATGCTTTCAA 9 Query 192 AGACTTTG 199 |||||||| Sbjct 8 AGACTTTG 1 >seq2894397 Length=322 Score = 172 bits (190), Expect = 1e-40 Identities = 101/105 (96%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1 CGACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGAT 60 |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 218 CGACTTGAGCTTGCTCGCCACCGGCAGCAACACCAGGTTGGCACTCGCCACGCCGTAGAT 277 Query 61 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGG 105 |||||||||||||||||||||||||||||||||||| ||||| || Sbjct 278 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGCTGCGACGG 322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 958260803232