Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001416.1
Length=341
Score E
Sequences producing significant alignments: (Bits) Value
seq3022995 515 8e-144
seq3077726 502 5e-140
seq168358 502 5e-140
seq2435818 257 3e-66
seq2575211 232 1e-58
seq2300676 230 4e-58
seq2195024 208 1e-51
seq2894397 172 1e-40
>seq3022995
Length=829
Score = 515 bits (570), Expect = 8e-144
Identities = 319/340 (94%), Gaps = 1/340 (0%)
Strand=Plus/Minus
Query 1 CGACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGAT 60
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 625 CGACTTGAGCTTGCTTGCCACCGGCAACAACACCAGGTTGGCACTCGCCACGCCGTAGAT 566
Query 61 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCC 120
||| |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 565 GGTCGCGACAAAGGCCACGGCAATGCCGCTGCCCAGCTGCGACGGGTCGGCCAGGTTGCC 506
Query 121 CATCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCC 180
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 505 CATCACGTGGATAAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCATAGCCGCC 446
Query 181 CATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCA 240
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 445 CATGCTTTCAAAGACTTTGGCGGCGTTGATATCACGGCTTTCCTGGGT-GTAGAAATCCA 387
Query 241 CTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTT 300
||||| ||| ||||||||||| || || || ||||| || |||||||||||||||||||
Sbjct 386 CTTCCAGAATGCTGCGAATCGCCTCGGGTTCAGCGCCATCAACCAGCAGTTGCAGGCCTT 327
Query 301 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 340
||||||| ||||||||||||||||||||||||||||||||
Sbjct 326 TGCGCGCATAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 287
>seq3077726
Length=1981
Score = 502 bits (556), Expect = 5e-140
Identities = 316/340 (93%), Gaps = 1/340 (0%)
Strand=Plus/Minus
Query 1 CGACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGAT 60
|||||||||||||||||||||||||| || |||||||||||| || |||||||| |||||
Sbjct 670 CGACTTGAGCTTGCTCGCCACCGGCAGCAGCACCAGGTTGGCGCTCGCCACGCCATAGAT 611
Query 61 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 610 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCCAGGTTGCC 551
Query 121 CATCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCC 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 550 CATCACGTGGATCAGGCCCATCACCGCGCCGATGATGCCGATGGTCGGCGCGTAGCCGCC 491
Query 181 CATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCA 240
|||||||||||| |||||||| || ||||| || |||||||||||||| |||||||||||
Sbjct 490 CATGCTTTCAAACACTTTGGCCGCATTGATGTCACGGCTTTCCTGGGT-GTAGAAATCCA 432
Query 241 CTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTT 300
| || | | ||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 431 CCTCGAGGATGCTGCGGATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAAGCCCT 372
Query 301 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 340
|||| || ||||||||||||||||||||||||||||||||
Sbjct 371 TGCGTGCATAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 332
>seq168358
Length=3320
Score = 502 bits (556), Expect = 5e-140
Identities = 316/340 (93%), Gaps = 1/340 (0%)
Strand=Plus/Plus
Query 1 CGACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGAT 60
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1738 CGATTTGAGCTTGCTGGCCACCGGCAACAACACCAGGTTGGCACTCGCCACGCCGTAAAT 1797
Query 61 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCC 120
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 1798 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGCTGCGACGGGTCGGCCAGGTTGCC 1857
Query 121 CATCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCC 180
||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1858 CATCACGCGGATCAGGCCCATCACTGCACCGATGATGCCGATGGTCGGTGCGTAGCCGCC 1917
Query 181 CATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCA 240
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1918 CATGCTTTCAAAGACTTTGGCGGCGTTGATGTCGCGGCTTTCCTGGGT-GTAGAAATCCA 1976
Query 241 CTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTT 300
| || | | ||||||||||| || || |||||||| || ||||||||||||| |||||
Sbjct 1977 CCTCAAGGATGCTGCGAATCGCCTCGGGTTCGGCGCCATCGACCAGCAGTTGCAAGCCTT 2036
Query 301 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 340
||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 2076
>seq2435818
Length=157
Score = 257 bits (284), Expect = 3e-66
Identities = 151/157 (96%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 43 ACTGGCCACGCCGTAGATGGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGA 102
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 157 ACTCGCCACGCCGTAGATGGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGCTGCGA 98
Query 103 AGGGTCGGCGAGGTTGCCCATCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGAT 162
|| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 97 CGGATCGGCCAGGTTGCCCATCACGTGGATCAAGCCCATCACCGCACCGATGATGCCGAT 38
Query 163 GGTCGGCGCGTAGCCGCCCATGCTTTCAAAGACTTTG 199
|||||||||||||||||||||||||||||||||||||
Sbjct 37 GGTCGGCGCGTAGCCGCCCATGCTTTCAAAGACTTTG 1
>seq2575211
Length=177
Score = 232 bits (256), Expect = 1e-58
Identities = 148/160 (93%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 181 CATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCA 240
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 177 CATGCTTTCAAAGACTTTGGCGGCGTTGATGTCGCGGCTTTCCTGGGTG-TAGAAATCCA 119
Query 241 CTTCCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTT 300
| || | | ||||| ||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct 118 CCTCGAGGATGCTGCGGATCGCCTCCGGTTCGGCGCCGTCCACCAGCAATTGCAGGCCTT 59
Query 301 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 340
||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TGCGCGCGTAGCTGTCGGGCTCGGCATCGGCCACGCCTTC 19
>seq2300676
Length=137
Score = 230 bits (254), Expect = 4e-58
Identities = 133/137 (97%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 72 ACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCCCATCACGTGGA 131
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 1 ACGCCACGGCAATGCCGCTGCCCAGCTGCGACGGGTCGGCCAGGTTGCCCATCACGTGGA 60
Query 132 TCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCATGCTTTCAA 191
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAGGCCCATCACTGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCATGCTTTCAA 120
Query 192 AGACTTTGGCGGCGTTG 208
|||||||||||||||||
Sbjct 121 AGACTTTGGCGGCGTTG 137
>seq2195024
Length=128
Score = 208 bits (230), Expect = 1e-51
Identities = 123/128 (96%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 72 ACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCCCATCACGTGGA 131
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 128 ACGCCACGGCAATGCCGCTGCCCAGCTGCGACGGGTCGGCCAGGTTGCCCATCACGTGGA 69
Query 132 TCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCATGCTTTCAA 191
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 TCAAACCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCATGCTTTCAA 9
Query 192 AGACTTTG 199
||||||||
Sbjct 8 AGACTTTG 1
>seq2894397
Length=322
Score = 172 bits (190), Expect = 1e-40
Identities = 101/105 (96%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1 CGACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGAT 60
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 218 CGACTTGAGCTTGCTCGCCACCGGCAGCAACACCAGGTTGGCACTCGCCACGCCGTAGAT 277
Query 61 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGG 105
|||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 278 GGTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGCTGCGACGG 322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 958260803232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |