Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001429.1
Length=150
Score E
Sequences producing significant alignments: (Bits) Value
seq328746 113 3e-23
seq2985607 80.6 2e-13
seq3046434 77.0 2e-12
seq2851136 77.0 2e-12
seq191199 77.0 2e-12
seq3072546 73.4 3e-11
seq3058588 73.4 3e-11
seq3022056 73.4 3e-11
seq2972399 73.4 3e-11
seq2938959 73.4 3e-11
seq275001 73.4 3e-11
>seq328746
Length=693
Score = 113 bits (124), Expect = 3e-23
Identities = 120/158 (76%), Gaps = 13/158 (8%)
Strand=Plus/Minus
Query 5 CTCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATTTGC 64
||||| || ||| | |||||| ||| || ||||| |||||||| |||||||||||||
Sbjct 501 CTCGGTGCATCAGTTGCACCGAGTTGATGCTATCGCGGGCAAGCCCGCTCCCACATTTGT 442
Query 65 TTTTCCCATGGTTCA----------AGCCCCTCGCC--CTCCTTGCCAACAACCTTTTTC 112
| | | || ||||| ||||||| || ||| |||||| ||||||||
Sbjct 441 TCTGCACACTGTTCAATACCTTATCAGCCCCTGACCAGGAGCTTTCCAACAGCCTTTTTC 382
Query 113 CAACCGGAACAAGCTGCTTACTGTACCGATCATAAAGC 150
|| ||||||||||||| |||||||||||||||||||||
Sbjct 381 CAGCCGGAACAAGCTG-TTACTGTACCGATCATAAAGC 345
>seq2985607
Length=584
Score = 80.6 bits (88), Expect = 2e-13
Identities = 53/59 (90%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 2 CGACTCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACAT 60
|||||||| || |||||| |||||||||| || |||||||||||||||||||||||||
Sbjct 217 CGACTCGGTGCCTCATATGAACCGAGGTGATGCTATCGCAGGCAAGCCAGCTCCCACAT 159
>seq3046434
Length=1092
Score = 77.0 bits (84), Expect = 2e-12
Identities = 51/57 (89%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 6 TCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATTT 62
|||| || ||| ||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 745 TCGGTGCATCAGATACACCGAGTTGATGCCATCGCAGGCAAGCCAGCTCCCACATTT 689
>seq2851136
Length=271
Score = 77.0 bits (84), Expect = 2e-12
Identities = 46/47 (98%), Gaps = 1/47 (2%)
Strand=Plus/Plus
Query 104 ACCTTTTTCCAACCGGAACAAGCTGCTTACTGTACCGATCATAAAGC 150
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 209 ACCTTTTTCCAACCGGAACAAGCTG-TTACTGTACCGATCATAAAGC 254
>seq191199
Length=3995
Score = 77.0 bits (84), Expect = 2e-12
Identities = 46/47 (98%), Gaps = 1/47 (2%)
Strand=Plus/Plus
Query 104 ACCTTTTTCCAACCGGAACAAGCTGCTTACTGTACCGATCATAAAGC 150
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1802 ACCTTTTTCCAACCGGAACAAGCTG-TTACTGTACCGATCATAAAGC 1847
>seq3072546
Length=1702
Score = 73.4 bits (80), Expect = 3e-11
Identities = 48/52 (92%), Gaps = 1/52 (2%)
Strand=Plus/Minus
Query 99 CAACAACCTTTTTCCAACCGGAACAAGCTGCTTACTGTACCGATCATAAAGC 150
|| || |||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 125 CAGCAGCCTTTTTCCATCCGGAACAAGCTG-TTACTGTACCGATCATAAAGC 75
>seq3058588
Length=1302
Score = 73.4 bits (80), Expect = 3e-11
Identities = 54/63 (86%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 5 CTCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATTTGC 64
||||| | |||| || |||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1016 CTCGGTGATTCAGGTAGACCGAGGTGATGCTATCGCAGGCAAGCCAGCTCCCACATTAGC 957
Query 65 TTT 67
||
Sbjct 956 CTT 954
>seq3022056
Length=821
Score = 73.4 bits (80), Expect = 3e-11
Identities = 51/58 (88%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 5 CTCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATTT 62
||||| | ||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 610 CTCGGTACATCAGGTACACCGAGGTGATGCCATCGCAGGCAAGCCAGCTCCCACATTT 553
>seq2972399
Length=525
Score = 73.4 bits (80), Expect = 3e-11
Identities = 40/40 (100%), Gaps = 0/40 (0%)
Strand=Plus/Minus
Query 22 ACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATT 61
||||||||||||||||||||||||||||||||||||||||
Sbjct 250 ACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATT 211
>seq2938959
Length=413
Score = 73.4 bits (80), Expect = 3e-11
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 19 TATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATTTG 63
|| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 229 TAGACCGAGGTGATGCCATCGCAGGCAAGCCAGCTCCCACATTTG 185
>seq275001
Length=2408
Score = 73.4 bits (80), Expect = 3e-11
Identities = 52/60 (87%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 5 CTCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATTTGC 64
||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2191 CTCGGTTTTTCATCCCTACCGAGGTGATGCTATCGCAGGCAAGCCAGCTCCCACATTTGC 2250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 372881360400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |