Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001429.1 Length=150 Score E Sequences producing significant alignments: (Bits) Value seq328746 113 3e-23 seq2985607 80.6 2e-13 seq3046434 77.0 2e-12 seq2851136 77.0 2e-12 seq191199 77.0 2e-12 seq3072546 73.4 3e-11 seq3058588 73.4 3e-11 seq3022056 73.4 3e-11 seq2972399 73.4 3e-11 seq2938959 73.4 3e-11 seq275001 73.4 3e-11 >seq328746 Length=693 Score = 113 bits (124), Expect = 3e-23 Identities = 120/158 (76%), Gaps = 13/158 (8%) Strand=Plus/Minus Query 5 CTCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATTTGC 64 ||||| || ||| | |||||| ||| || ||||| |||||||| ||||||||||||| Sbjct 501 CTCGGTGCATCAGTTGCACCGAGTTGATGCTATCGCGGGCAAGCCCGCTCCCACATTTGT 442 Query 65 TTTTCCCATGGTTCA----------AGCCCCTCGCC--CTCCTTGCCAACAACCTTTTTC 112 | | | || ||||| ||||||| || ||| |||||| |||||||| Sbjct 441 TCTGCACACTGTTCAATACCTTATCAGCCCCTGACCAGGAGCTTTCCAACAGCCTTTTTC 382 Query 113 CAACCGGAACAAGCTGCTTACTGTACCGATCATAAAGC 150 || ||||||||||||| ||||||||||||||||||||| Sbjct 381 CAGCCGGAACAAGCTG-TTACTGTACCGATCATAAAGC 345 >seq2985607 Length=584 Score = 80.6 bits (88), Expect = 2e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2 CGACTCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACAT 60 |||||||| || |||||| |||||||||| || ||||||||||||||||||||||||| Sbjct 217 CGACTCGGTGCCTCATATGAACCGAGGTGATGCTATCGCAGGCAAGCCAGCTCCCACAT 159 >seq3046434 Length=1092 Score = 77.0 bits (84), Expect = 2e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 6 TCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATTT 62 |||| || ||| ||| |||||| ||| |||||||||||||||||||||||||||||| Sbjct 745 TCGGTGCATCAGATACACCGAGTTGATGCCATCGCAGGCAAGCCAGCTCCCACATTT 689 >seq2851136 Length=271 Score = 77.0 bits (84), Expect = 2e-12 Identities = 46/47 (98%), Gaps = 1/47 (2%) Strand=Plus/Plus Query 104 ACCTTTTTCCAACCGGAACAAGCTGCTTACTGTACCGATCATAAAGC 150 ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 209 ACCTTTTTCCAACCGGAACAAGCTG-TTACTGTACCGATCATAAAGC 254 >seq191199 Length=3995 Score = 77.0 bits (84), Expect = 2e-12 Identities = 46/47 (98%), Gaps = 1/47 (2%) Strand=Plus/Plus Query 104 ACCTTTTTCCAACCGGAACAAGCTGCTTACTGTACCGATCATAAAGC 150 ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1802 ACCTTTTTCCAACCGGAACAAGCTG-TTACTGTACCGATCATAAAGC 1847 >seq3072546 Length=1702 Score = 73.4 bits (80), Expect = 3e-11 Identities = 48/52 (92%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 99 CAACAACCTTTTTCCAACCGGAACAAGCTGCTTACTGTACCGATCATAAAGC 150 || || |||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 125 CAGCAGCCTTTTTCCATCCGGAACAAGCTG-TTACTGTACCGATCATAAAGC 75 >seq3058588 Length=1302 Score = 73.4 bits (80), Expect = 3e-11 Identities = 54/63 (86%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 5 CTCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATTTGC 64 ||||| | |||| || |||||||||| || |||||||||||||||||||||||||| || Sbjct 1016 CTCGGTGATTCAGGTAGACCGAGGTGATGCTATCGCAGGCAAGCCAGCTCCCACATTAGC 957 Query 65 TTT 67 || Sbjct 956 CTT 954 >seq3022056 Length=821 Score = 73.4 bits (80), Expect = 3e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 5 CTCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATTT 62 ||||| | ||| || |||||||||| |||||||||||||||||||||||||||||| Sbjct 610 CTCGGTACATCAGGTACACCGAGGTGATGCCATCGCAGGCAAGCCAGCTCCCACATTT 553 >seq2972399 Length=525 Score = 73.4 bits (80), Expect = 3e-11 Identities = 40/40 (100%), Gaps = 0/40 (0%) Strand=Plus/Minus Query 22 ACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATT 61 |||||||||||||||||||||||||||||||||||||||| Sbjct 250 ACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATT 211 >seq2938959 Length=413 Score = 73.4 bits (80), Expect = 3e-11 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 19 TATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATTTG 63 || |||||||||| ||||||||||||||||||||||||||||||| Sbjct 229 TAGACCGAGGTGATGCCATCGCAGGCAAGCCAGCTCCCACATTTG 185 >seq275001 Length=2408 Score = 73.4 bits (80), Expect = 3e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 5 CTCGGAGCTTCATATATACCGAGGTGAAGCCATCGCAGGCAAGCCAGCTCCCACATTTGC 64 ||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||| Sbjct 2191 CTCGGTTTTTCATCCCTACCGAGGTGATGCTATCGCAGGCAAGCCAGCTCCCACATTTGC 2250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 372881360400