Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq210950 208 1e-51 seq2356423 163 5e-38 seq2893598 159 7e-37 seq1867293 138 2e-30 seq312353 134 3e-29 seq2249034 132 9e-29 seq1645186 129 1e-27 seq2037304 125 1e-26 seq1733052 114 2e-23 seq2082712 113 9e-23 seq2257643 105 1e-20 seq2042638 102 2e-19 seq2042637 102 2e-19 seq2726030 86.0 1e-14 seq353856 86.0 1e-14 seq1868193 77.0 6e-12 seq1801469 77.0 6e-12 seq1689441 73.4 8e-11 >seq210950 Length=3273 Score = 208 bits (230), Expect = 1e-51 Identities = 238/316 (75%), Gaps = 13/316 (4%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| ||| | |||| |||| |||||| | || || ||| ||||||||||||||||| Sbjct 571 GGCGTTGCTCCGTCAGACTTTCGTCCATTGCGGAAGATTCCCTACTGCTGCCTCCCGTAG 512 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||| || Sbjct 511 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCACCCTCTCAGGTCGGCTACGCAT 452 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || ||| ||||||||||| ||||| | |||| | ||||| | | Sbjct 451 CGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATGCGACGCGGGTCCATCCATAA 392 Query 181 GCGATA----AA---TCTTTGGTCAA---AGAATGATGCCATCCTCTGACATTATGCGGT 230 | || | || | || |||| ||| |||| | | | ||||| |||| Sbjct 391 GTGACAGCCGAAGCCGCCTT--TCAATTTCGAACTATGCAGTTC-AAAATATTATCCGGT 335 Query 231 ATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTC 290 |||||| |||||| ||||| ||| ||| | || ||||| | |||||||||||| Sbjct 334 ATTAGCCCCGGTTTCCCGGAGTTATCCCAGTCTTATGGGTAGGTTACCCACGTGTTACTC 275 Query 291 ACCCGTCCGCCACTAA 306 ||||||||||| |||| Sbjct 274 ACCCGTCCGCCGCTAA 259 >seq2356423 Length=144 Score = 163 bits (180), Expect = 5e-38 Identities = 116/133 (87%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 28 TTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 87 |||| |||||| ||||||||||||||||||||||||||||| |||||||||||| ||| | Sbjct 1 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 60 Query 88 GTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCAC 147 ||||| | ||| |||||||| || | ||| |||||||| ||||||| || |||| ||||| Sbjct 61 GTGGCTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 120 Query 148 CAACTACCTAATC 160 |||||| |||||| Sbjct 121 CAACTAGCTAATC 133 >seq2893598 Length=321 Score = 159 bits (176), Expect = 7e-37 Identities = 115/133 (86%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||||||||||| || | ||||||||||||||| ||||||||||||||||||||| Sbjct 133 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 74 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| |||||| | ||| |||||||| || |||| ||| Sbjct 73 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGAT 14 Query 121 CGTCGGCTTGGTG 133 ||||| || |||| Sbjct 13 CGTCGCCTAGGTG 1 >seq1867293 Length=127 Score = 138 bits (152), Expect = 2e-30 Identities = 100/116 (86%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 45 CTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCT 104 |||||||||||||||||||||||| |||||||||||| ||| |||| | | ||| ||||| Sbjct 127 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCT 68 Query 105 CAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||| || | ||| |||||||| ||||||| || |||| ||||||||||| |||||| Sbjct 67 CAGGCCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 12 >seq312353 Length=471 Score = 134 bits (148), Expect = 3e-29 Identities = 85/92 (92%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 92 GGCATGGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 33 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGC 92 ||||||||||||||||||||||||| |||||| Sbjct 32 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGC 1 >seq2249034 Length=132 Score = 132 bits (146), Expect = 9e-29 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| |||| |||||||| |||||| |||||||||||||||||| || Sbjct 12 GGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGCAG 71 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| |||| | | ||| |||||||| || | ||| ||| Sbjct 72 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGAT 131 Query 121 C 121 | Sbjct 132 C 132 >seq1645186 Length=127 Score = 129 bits (142), Expect = 1e-27 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| |||| |||||||| |||||| ||||||||||||| ||||||| Sbjct 116 GGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCGCCCGTAG 57 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTAC 116 |||||||| |||||||||||| ||| |||| | | ||| |||||||| || | ||| Sbjct 56 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTAC 1 >seq2037304 Length=127 Score = 125 bits (138), Expect = 1e-26 Identities = 92/107 (86%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| |||| |||||||| |||||| |||| |||||||||||||||| Sbjct 107 GGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCCCTGCTGCCTCCCGTAG 48 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAG 107 |||||||| |||||||||||| ||| |||| | | ||| |||||||| Sbjct 47 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAG 1 >seq1733052 Length=127 Score = 114 bits (126), Expect = 2e-23 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||||| |||||||| |||||| ||||||||||||||||||||| Sbjct 81 GGCATGGCTGGATCAGGGTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 22 Query 61 GAGTCTGGGCCGTGTCTCAGT 81 |||||||| |||||||||||| Sbjct 21 GAGTCTGGACCGTGTCTCAGT 1 >seq2082712 Length=127 Score = 113 bits (124), Expect = 9e-23 Identities = 79/90 (88%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| |||| ||| |||| |||||| ||||||||||||||||||||| Sbjct 38 GGCATGGCTGGATCAGGCTTTCGCCCCTTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 97 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTG 90 |||||||| |||||||||||| ||| |||| Sbjct 98 GAGTCTGGACCGTGTCTCAGTTCCAGTGTG 127 >seq2257643 Length=133 Score = 105 bits (116), Expect = 1e-20 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||| |||| |||||||| |||||| ||||||||||||||||||||| Sbjct 81 GGCATGGCTGGGTCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 22 Query 61 GAGTCTGGGCCGTGTCTCAGT 81 |||||||| |||||||||||| Sbjct 21 GAGTCTGGACCGTGTCTCAGT 1 >seq2042638 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 62 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121 ||||||| |||||||||||| ||| |||| | | ||| |||||||| || | ||| |||| Sbjct 1 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 60 Query 122 GTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||| ||||||| || |||| ||||||||||| |||||| Sbjct 61 GTCTCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 99 >seq2042637 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 62 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121 ||||||| |||||||||||| ||| |||| | | ||| |||||||| || | ||| |||| Sbjct 1 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 60 Query 122 GTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||| ||||||| || |||| ||||||||||| |||||| Sbjct 61 GTCCCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 99 >seq2726030 Length=205 Score = 86.0 bits (94), Expect = 1e-14 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||||||||||| ||| |||||| | ||| |||||||| || |||| |||||||| || | Sbjct 1 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 60 Query 131 GTGGGCTATTATCTCACCAACTACCTAATC 160 |||||| |||| | | || |||| |||||| Sbjct 61 GTGGGCCATTACCCCGCCTACTAGCTAATC 90 >seq353856 Length=588 Score = 86.0 bits (94), Expect = 1e-14 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||||||||||| ||| |||||| | ||| |||||||| || |||| |||||||| || | Sbjct 588 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 529 Query 131 GTGGGCTATTATCTCACCAACTACCTAATC 160 ||| || |||| | |||| |||| |||||| Sbjct 528 GTGAGCCATTACCCCACCTACTAGCTAATC 499 >seq1868193 Length=127 Score = 77.0 bits (84), Expect = 6e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 223 TATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACG 282 |||||||||||||||| ||||||| |||||||| || | || |||||| || || | | Sbjct 23 TATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTCCCAGGCAGATTCCT-AGG 81 Query 283 TGTTACTCACCCGTCCGCCACT 304 ||||||||||||||||| || Sbjct 82 CTTTACTCACCCGTCCGCCGCT 103 >seq1801469 Length=127 Score = 77.0 bits (84), Expect = 6e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 223 TATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACG 282 |||||||||||||||| ||||||| |||||||| || | || |||||| || || | | Sbjct 106 TATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTATCAGGCAGATTCCT-AGG 48 Query 283 TGTTACTCACCCGTCCGCCACT 304 ||||||||||||||||| || Sbjct 47 CATTACTCACCCGTCCGCCGCT 26 >seq1689441 Length=127 Score = 73.4 bits (80), Expect = 8e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 223 TATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACG 282 |||||||||||||||| ||||||| |||||||| || | || |||||| || || | | Sbjct 127 TATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCT-AGG 69 Query 283 TGTTACTCACCCGTCCGCCACT 304 || |||||||||||||| || Sbjct 68 CTTTCCTCACCCGTCCGCCGCT 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 967564306176