Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq210950 208 1e-51
seq2356423 163 5e-38
seq2893598 159 7e-37
seq1867293 138 2e-30
seq312353 134 3e-29
seq2249034 132 9e-29
seq1645186 129 1e-27
seq2037304 125 1e-26
seq1733052 114 2e-23
seq2082712 113 9e-23
seq2257643 105 1e-20
seq2042638 102 2e-19
seq2042637 102 2e-19
seq2726030 86.0 1e-14
seq353856 86.0 1e-14
seq1868193 77.0 6e-12
seq1801469 77.0 6e-12
seq1689441 73.4 8e-11
>seq210950
Length=3273
Score = 208 bits (230), Expect = 1e-51
Identities = 238/316 (75%), Gaps = 13/316 (4%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||||| ||| | |||| |||| |||||| | || || ||| |||||||||||||||||
Sbjct 571 GGCGTTGCTCCGTCAGACTTTCGTCCATTGCGGAAGATTCCCTACTGCTGCCTCCCGTAG 512
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||| ||
Sbjct 511 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCACCCTCTCAGGTCGGCTACGCAT 452
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
||||| ||||||| || ||| ||||||||||| ||||| | |||| | ||||| | |
Sbjct 451 CGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATGCGACGCGGGTCCATCCATAA 392
Query 181 GCGATA----AA---TCTTTGGTCAA---AGAATGATGCCATCCTCTGACATTATGCGGT 230
| || | || | || |||| ||| |||| | | | ||||| ||||
Sbjct 391 GTGACAGCCGAAGCCGCCTT--TCAATTTCGAACTATGCAGTTC-AAAATATTATCCGGT 335
Query 231 ATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTC 290
|||||| |||||| ||||| ||| ||| | || ||||| | ||||||||||||
Sbjct 334 ATTAGCCCCGGTTTCCCGGAGTTATCCCAGTCTTATGGGTAGGTTACCCACGTGTTACTC 275
Query 291 ACCCGTCCGCCACTAA 306
||||||||||| ||||
Sbjct 274 ACCCGTCCGCCGCTAA 259
>seq2356423
Length=144
Score = 163 bits (180), Expect = 5e-38
Identities = 116/133 (87%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 28 TTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 87
|||| |||||| ||||||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 1 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 60
Query 88 GTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCAC 147
||||| | ||| |||||||| || | ||| |||||||| ||||||| || |||| |||||
Sbjct 61 GTGGCTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 120
Query 148 CAACTACCTAATC 160
|||||| ||||||
Sbjct 121 CAACTAGCTAATC 133
>seq2893598
Length=321
Score = 159 bits (176), Expect = 7e-37
Identities = 115/133 (86%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||||||||||| || | ||||||||||||||| |||||||||||||||||||||
Sbjct 133 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 74
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||||| |||||||||||| ||| |||||| | ||| |||||||| || |||| |||
Sbjct 73 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGAT 14
Query 121 CGTCGGCTTGGTG 133
||||| || ||||
Sbjct 13 CGTCGCCTAGGTG 1
>seq1867293
Length=127
Score = 138 bits (152), Expect = 2e-30
Identities = 100/116 (86%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 45 CTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCT 104
|||||||||||||||||||||||| |||||||||||| ||| |||| | | ||| |||||
Sbjct 127 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCT 68
Query 105 CAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160
||| || | ||| |||||||| ||||||| || |||| ||||||||||| ||||||
Sbjct 67 CAGGCCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 12
>seq312353
Length=471
Score = 134 bits (148), Expect = 3e-29
Identities = 85/92 (92%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| ||||||||| |||||||||| |||||| |||||||||||||||||||||
Sbjct 92 GGCATGGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 33
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGC 92
||||||||||||||||||||||||| ||||||
Sbjct 32 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGC 1
>seq2249034
Length=132
Score = 132 bits (146), Expect = 9e-29
Identities = 102/121 (84%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| |||||| |||| |||||||| |||||| |||||||||||||||||| ||
Sbjct 12 GGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGCAG 71
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||||| |||||||||||| ||| |||| | | ||| |||||||| || | ||| |||
Sbjct 72 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGAT 131
Query 121 C 121
|
Sbjct 132 C 132
>seq1645186
Length=127
Score = 129 bits (142), Expect = 1e-27
Identities = 98/116 (84%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| |||||| |||| |||||||| |||||| ||||||||||||| |||||||
Sbjct 116 GGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCGCCCGTAG 57
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTAC 116
|||||||| |||||||||||| ||| |||| | | ||| |||||||| || | |||
Sbjct 56 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTAC 1
>seq2037304
Length=127
Score = 125 bits (138), Expect = 1e-26
Identities = 92/107 (86%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| |||||| |||| |||||||| |||||| |||| ||||||||||||||||
Sbjct 107 GGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCCCTGCTGCCTCCCGTAG 48
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAG 107
|||||||| |||||||||||| ||| |||| | | ||| ||||||||
Sbjct 47 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAG 1
>seq1733052
Length=127
Score = 114 bits (126), Expect = 2e-23
Identities = 74/81 (91%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| ||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct 81 GGCATGGCTGGATCAGGGTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 22
Query 61 GAGTCTGGGCCGTGTCTCAGT 81
|||||||| ||||||||||||
Sbjct 21 GAGTCTGGACCGTGTCTCAGT 1
>seq2082712
Length=127
Score = 113 bits (124), Expect = 9e-23
Identities = 79/90 (88%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| |||||| |||| ||| |||| |||||| |||||||||||||||||||||
Sbjct 38 GGCATGGCTGGATCAGGCTTTCGCCCCTTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 97
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTG 90
|||||||| |||||||||||| ||| ||||
Sbjct 98 GAGTCTGGACCGTGTCTCAGTTCCAGTGTG 127
>seq2257643
Length=133
Score = 105 bits (116), Expect = 1e-20
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| ||||| |||| |||||||| |||||| |||||||||||||||||||||
Sbjct 81 GGCATGGCTGGGTCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 22
Query 61 GAGTCTGGGCCGTGTCTCAGT 81
|||||||| ||||||||||||
Sbjct 21 GAGTCTGGACCGTGTCTCAGT 1
>seq2042638
Length=127
Score = 102 bits (112), Expect = 2e-19
Identities = 82/99 (83%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 62 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121
||||||| |||||||||||| ||| |||| | | ||| |||||||| || | ||| ||||
Sbjct 1 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 60
Query 122 GTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160
||| ||||||| || |||| ||||||||||| ||||||
Sbjct 61 GTCTCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 99
>seq2042637
Length=127
Score = 102 bits (112), Expect = 2e-19
Identities = 82/99 (83%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 62 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121
||||||| |||||||||||| ||| |||| | | ||| |||||||| || | ||| ||||
Sbjct 1 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 60
Query 122 GTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160
||| ||||||| || |||| ||||||||||| ||||||
Sbjct 61 GTCCCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 99
>seq2726030
Length=205
Score = 86.0 bits (94), Expect = 1e-14
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130
||||||||||| ||| |||||| | ||| |||||||| || |||| |||||||| || |
Sbjct 1 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 60
Query 131 GTGGGCTATTATCTCACCAACTACCTAATC 160
|||||| |||| | | || |||| ||||||
Sbjct 61 GTGGGCCATTACCCCGCCTACTAGCTAATC 90
>seq353856
Length=588
Score = 86.0 bits (94), Expect = 1e-14
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130
||||||||||| ||| |||||| | ||| |||||||| || |||| |||||||| || |
Sbjct 588 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 529
Query 131 GTGGGCTATTATCTCACCAACTACCTAATC 160
||| || |||| | |||| |||| ||||||
Sbjct 528 GTGAGCCATTACCCCACCTACTAGCTAATC 499
>seq1868193
Length=127
Score = 77.0 bits (84), Expect = 6e-12
Identities = 67/82 (82%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 223 TATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACG 282
|||||||||||||||| ||||||| |||||||| || | || |||||| || || | |
Sbjct 23 TATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTCCCAGGCAGATTCCT-AGG 81
Query 283 TGTTACTCACCCGTCCGCCACT 304
||||||||||||||||| ||
Sbjct 82 CTTTACTCACCCGTCCGCCGCT 103
>seq1801469
Length=127
Score = 77.0 bits (84), Expect = 6e-12
Identities = 67/82 (82%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 223 TATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACG 282
|||||||||||||||| ||||||| |||||||| || | || |||||| || || | |
Sbjct 106 TATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTATCAGGCAGATTCCT-AGG 48
Query 283 TGTTACTCACCCGTCCGCCACT 304
||||||||||||||||| ||
Sbjct 47 CATTACTCACCCGTCCGCCGCT 26
>seq1689441
Length=127
Score = 73.4 bits (80), Expect = 8e-11
Identities = 66/82 (80%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 223 TATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACG 282
|||||||||||||||| ||||||| |||||||| || | || |||||| || || | |
Sbjct 127 TATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCT-AGG 69
Query 283 TGTTACTCACCCGTCCGCCACT 304
|| |||||||||||||| ||
Sbjct 68 CTTTCCTCACCCGTCCGCCGCT 47
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 967564306176
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