Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001435.1 Length=587 Score E Sequences producing significant alignments: (Bits) Value seq2927389 545 8e-153 seq2883129 423 7e-116 seq2886027 334 3e-89 seq2805757 311 3e-82 seq2386232 215 2e-53 seq2906812 210 8e-52 seq311712 205 3e-50 seq2954883 172 2e-40 seq2814108 172 2e-40 seq2753338 141 3e-31 seq2259986 129 2e-27 seq1858202 123 9e-26 seq2721167 122 3e-25 seq2145692 118 4e-24 seq1695241 118 4e-24 seq499247 107 7e-21 seq1870728 102 3e-19 >seq2927389 Length=385 Score = 545 bits (604), Expect = 8e-153 Identities = 352/385 (91%), Gaps = 0/385 (0%) Strand=Plus/Minus Query 16 GGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACGCAGATGGTCGGTGCG 75 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || Sbjct 385 GGTTTTGCCACGGTCCCGGCTTACCTGGCCGACCTGTTCGGTACGCAAATGGTCGGCGCC 326 Query 76 ATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTGGGCCCGGTGTTGGTG 135 ||||| ||||||||||||||||||||||| || || ||||| |||||||||||| ||||| Sbjct 325 ATCCATGGTCGCCTGCTGACCGCCTGGGCCGCTGCCGGCGTATTGGGCCCGGTGCTGGTG 266 Query 136 AACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCGCTGCGGCCTATGACATC 195 ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 265 AACTACCTGCGTGAATATCAGTTGAGCATCGGCGTTGAACGCGCTGCGGCCTACGACATC 206 Query 196 ACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGGGTTCATCTGCAACCTGCTGGTGCGT 255 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 205 ACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGGCTTCATCTGCAACCTGCTGGTGCGT 146 Query 256 CCGGTGGCCGACAAGTACTTCATGACCGACGCCGAACTGGCCGCCGAGCAAGCGCTGGGG 315 ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 145 CCGGTGGCCGACAAGTACTTCATGACCGATGCCGAACTCGCCGCCGAGCAGGCGCTGGGC 86 Query 316 CATGACAAAGGCGCCGACGCCAGCACGTCCCTGGAGTGGAAAGCCGCGCCAGGTACTGTG 375 |||||||||||||| ||||||||||| ||||||||||||||| | || || | | Sbjct 85 CATGACAAAGGCGCTGACGCCAGCACCGTGCTGGAGTGGAAAGCCTCCCCTGGCAGCAAG 26 Query 376 CCATTGGCGATTGCCGCCTGGCTGG 400 ||||||||| | ||||||||||||| Sbjct 25 CCATTGGCGGTCGCCGCCTGGCTGG 1 >seq2883129 Length=306 Score = 423 bits (468), Expect = 7e-116 Identities = 270/294 (92%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 37 TACCTGGCCGACCTGTTCGGTACGCAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACC 96 |||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||| Sbjct 2 TACCTGGCCGACCTGTTCGGCACCCAGATGGTCGGCGCGATCCACGGTCGCCTGTTGACC 61 Query 97 GCCTGGGCAGCGGCGGGCGTCTTGGGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAG 156 || ||||| ||||||||||| |||||||||||| |||| ||||| ||||||||||||||| Sbjct 62 GCTTGGGCGGCGGCGGGCGTGTTGGGCCCGGTGCTGGTCAACTACCTGCGTGAGTATCAG 121 Query 157 TTGAGCATCGGCGTTGAACGCGCTGCGGCCTATGACATCACCTTGTACATCCTCGCTGGC 216 ||||||||||||||||||| || || || ||||||||||||||||| |||||||| ||| Sbjct 122 CTGAGCATCGGCGTTGAACGTGCCGCAGCGTATGACATCACCTTGTATATCCTCGCCGGC 181 Query 217 CTGCTGGTGCTGGGGTTCATCTGCAACCTGCTGGTGCGTCCGGTGGCCGACAAGTACTTC 276 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 182 CTGCTGGTGCTGGGCTTCATCTGCAACCTGCTGGTGCGCCCGGTGGCCGACAAGTACTTC 241 Query 277 ATGACCGACGCCGAACTGGCCGCCGAGCAAGCGCTGGGGCATGACAAAGGCGCC 330 ||||||||||| |||||||| ||||| || |||||||| ||||||||||||||| Sbjct 242 ATGACCGACGCGGAACTGGCTGCCGAACAGGCGCTGGGCCATGACAAAGGCGCC 295 >seq2886027 Length=310 Score = 334 bits (370), Expect = 3e-89 Identities = 238/273 (87%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 |||||||||||||| |||||||| || || || || |||||||||||||||||||| || Sbjct 38 TCGATGTACGGCGGCGGTTTTGCGACTGTGCCTGCGTACCTGGCCGACCTGTTCGGCACC 97 Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120 || |||||||| |||||||||||||||||| ||||||| ||||| ||||| ||||| | Sbjct 98 CAAATGGTCGGCGCGATCCACGGTCGCCTGTTGACCGCATGGGCGGCGGCCGGCGTGCTT 157 Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCGCT 180 ||||||||| |||||||||| || || || || || |||||||||||||| |||||| Sbjct 158 GGCCCGGTGCTGGTGAACTACCTTCGCGAATACCAACTGAGCATCGGCGTTCCGCGCGCT 217 Query 181 GCGGCCTATGACATCACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGGGTTCATCTGC 240 |||||||| |||||||||||||||||||| || |||||| |||||||||| ||| ||||| Sbjct 218 GCGGCCTACGACATCACCTTGTACATCCTTGCAGGCCTGTTGGTGCTGGGTTTCCTCTGC 277 Query 241 AACCTGCTGGTGCGTCCGGTGGCCGACAAGTAC 273 |||||||||||||| |||||||||||||||||| Sbjct 278 AACCTGCTGGTGCGCCCGGTGGCCGACAAGTAC 310 >seq2805757 Length=238 Score = 311 bits (344), Expect = 3e-82 Identities = 211/237 (89%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 37 TACCTGGCCGACCTGTTCGGTACGCAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACC 96 |||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||| Sbjct 2 TACCTGGCCGACCTGTTCGGCACCCAGATGGTCGGCGCGATCCACGGTCGCCTGTTGACC 61 Query 97 GCCTGGGCAGCGGCGGGCGTCTTGGGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAG 156 || ||||| ||||| ||||| |||||||||||||||||||||| || || || || || Sbjct 62 GCATGGGCGGCGGCTGGCGTGCTGGGCCCGGTGTTGGTGAACTACCTTCGCGAATACCAA 121 Query 157 TTGAGCATCGGCGTTGAACGCGCTGCGGCCTATGACATCACCTTGTACATCCTCGCTGGC 216 ||||||| |||||| |||||||||||||| ||||||||||||||||||||||| ||| Sbjct 122 CTGAGCATTGGCGTTCCGCGCGCTGCGGCCTACGACATCACCTTGTACATCCTCGCAGGC 181 Query 217 CTGCTGGTGCTGGGGTTCATCTGCAACCTGCTGGTGCGTCCGGTGGCCGACAAGTAC 273 ||| |||||||||| ||| ||||||||||||||||||| |||||||||||||||||| Sbjct 182 CTGTTGGTGCTGGGTTTCCTCTGCAACCTGCTGGTGCGCCCGGTGGCCGACAAGTAC 238 >seq2386232 Length=149 Score = 215 bits (238), Expect = 2e-53 Identities = 137/149 (92%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 211 GCTGGCCTGCTGGTGCTGGGGTTCATCTGCAACCTGCTGGTGCGTCCGGTGGCCGACAAG 270 || |||||| |||||||||| ||| ||||||||||||||||||| ||||||||||||||| Sbjct 149 GCAGGCCTGTTGGTGCTGGGTTTCCTCTGCAACCTGCTGGTGCGCCCGGTGGCCGACAAG 90 Query 271 TACTTCATGACCGACGCCGAACTGGCCGCCGAGCAAGCGCTGGGGCATGACAAAGGCGCC 330 |||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||| Sbjct 89 TACTTCATGACCGACGCCGAACTGGCTGCCGAACAGGCGCTGGGCCATGACAAAGGCGCC 30 Query 331 GACGCCAGCACGTCCCTGGAGTGGAAAGC 359 || |||||||| || |||||||||||||| Sbjct 29 GATGCCAGCACTTCGCTGGAGTGGAAAGC 1 >seq2906812 Length=343 Score = 210 bits (232), Expect = 8e-52 Identities = 134/146 (92%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 298 GCCGAGCAAGCGCTGGGGCATGACAAAGGCGCCGACGCCAGCACGTCCCTGGAGTGGAAA 357 ||||| || |||||||| ||||||||||||||||| |||||||| || |||||||||||| Sbjct 2 GCCGAACAGGCGCTGGGCCATGACAAAGGCGCCGATGCCAGCACTTCGCTGGAGTGGAAA 61 Query 358 GCCGCGCCAGGTACTGTGCCATTGGCGATTGCCGCCTGGCTGGTGGTGGGTATTCCGTTG 417 || || || ||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 62 GCGGCCCCTGGTACTGTGCCGATGGCGATTGCCGCCTGGCTGGTGGTAGGTATTCCGTTG 121 Query 418 GCGTGGGGTGTGTGGGTGACCCTGCA 443 |||||||||||||||||||||||||| Sbjct 122 GCGTGGGGTGTGTGGGTGACCCTGCA 147 >seq311712 Length=428 Score = 205 bits (226), Expect = 3e-50 Identities = 133/146 (91%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 298 GCCGAGCAAGCGCTGGGGCATGACAAAGGCGCCGACGCCAGCACGTCCCTGGAGTGGAAA 357 ||||| || |||||||| ||||||||||||||||| |||||||| || |||||||||||| Sbjct 2 GCCGAACAGGCGCTGGGCCATGACAAAGGCGCCGATGCCAGCACTTCGCTGGAGTGGAAA 61 Query 358 GCCGCGCCAGGTACTGTGCCATTGGCGATTGCCGCCTGGCTGGTGGTGGGTATTCCGTTG 417 ||||| || || | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 GCCGCCCCTGGCAGCAAGCCATTGGCGATTGCCGCCTGGCTGGTGGTGGGTATTCCGTTG 121 Query 418 GCGTGGGGTGTGTGGGTGACCCTGCA 443 |||||||||||||||||||||||||| Sbjct 122 GCGTGGGGTGTGTGGGTGACCCTGCA 147 >seq2954883 Length=460 Score = 172 bits (190), Expect = 2e-40 Identities = 137/165 (83%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 279 GACCGACGCCGAACTGGCCGCCGAGCAAGCGCTGGGGCATGACAAAGGCGCCGACGCCAG 338 ||||||||| |||||||| ||||| || |||||||| ||||||||||||||| ||| Sbjct 1 GACCGACGCGGAACTGGCTGCCGAACAGGCGCTGGGCCATGACAAAGGCGCCACTGCCTC 60 Query 339 CACGTCCCTGGAGTGGAAAGCCGCGCCAGGTACTGTGCCATTGGCGATTGCCGCCTGGCT 398 ||||| ||||||||||| ||| | | | | ||||||||||| || | || ||||| Sbjct 61 TACGTCGCTGGAGTGGAAGGCCTCTTCCGCCAGCGTGCCATTGGCTATCGTGGCGTGGCT 120 Query 399 GGTGGTGGGTATTCCGTTGGCGTGGGGTGTGTGGGTGACCCTGCA 443 ||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 121 GGTAGTGGGCATTCCGTTGGCGTGGGGTGTGTGGGTGACCCTGCA 165 >seq2814108 Length=243 Score = 172 bits (190), Expect = 2e-40 Identities = 137/165 (83%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 279 GACCGACGCCGAACTGGCCGCCGAGCAAGCGCTGGGGCATGACAAAGGCGCCGACGCCAG 338 ||||||||| |||||||| ||||| || |||||||| ||||||||||||||| ||| Sbjct 243 GACCGACGCGGAACTGGCTGCCGAACAGGCGCTGGGCCATGACAAAGGCGCCACTGCCTC 184 Query 339 CACGTCCCTGGAGTGGAAAGCCGCGCCAGGTACTGTGCCATTGGCGATTGCCGCCTGGCT 398 || || ||||||||||| ||| | | | | ||||||||||| || | || ||||| Sbjct 183 TACCTCGCTGGAGTGGAAGGCCTCTTCCGCCAGCGTGCCATTGGCCATCGTGGCGTGGCT 124 Query 399 GGTGGTGGGTATTCCGTTGGCGTGGGGTGTGTGGGTGACCCTGCA 443 || |||||||||||||||||||||||||||||||||||||||||| Sbjct 123 GGCGGTGGGTATTCCGTTGGCGTGGGGTGTGTGGGTGACCCTGCA 79 >seq2753338 Length=214 Score = 141 bits (156), Expect = 3e-31 Identities = 89/96 (93%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| || Sbjct 96 TCGATGTACGGCGGCGGTTTTGCCACCGTTCCGGCGTACCTGGCCGACCTGTTCGGCACC 37 Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACC 96 ||||||||||| |||||||||||||||||| ||||| Sbjct 36 CAGATGGTCGGCGCGATCCACGGTCGCCTGTTGACC 1 >seq2259986 Length=133 Score = 129 bits (142), Expect = 2e-27 Identities = 86/96 (90%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 |||||||||||||| |||||||| || || || || |||||||||||||||||||| || Sbjct 38 TCGATGTACGGCGGCGGTTTTGCGACCGTGCCTGCGTACCTGGCCGACCTGTTCGGCACC 97 Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACC 96 ||||||||||| |||||||||||||||||| ||||| Sbjct 98 CAGATGGTCGGCGCGATCCACGGTCGCCTGTTGACC 133 >seq1858202 Length=127 Score = 123 bits (136), Expect = 9e-26 Identities = 74/78 (95%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 78 TCGATGTACGGCGGTGGTTTTGCCACGGTCCCGGCTTACCTGGCCGACCTGTTCGGTACG 19 Query 61 CAGATGGTCGGTGCGATC 78 || |||||||| || ||| Sbjct 18 CAAATGGTCGGCGCCATC 1 >seq2721167 Length=203 Score = 122 bits (134), Expect = 3e-25 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 |||||||||||||| |||||||| || |||||||| |||||||||||||||||||| || Sbjct 85 TCGATGTACGGCGGCGGTTTTGCGACCGTTCCGGCCTACCTGGCCGACCTGTTCGGCACC 26 Query 61 CAGATGGTCGGTGCGATCCACGGTC 85 ||||||||||| ||||||||||||| Sbjct 25 CAGATGGTCGGCGCGATCCACGGTC 1 >seq2145692 Length=127 Score = 118 bits (130), Expect = 4e-24 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 50 TCGATGTACGGCGGGGGTTTTGCCACGGTCCCGGCTTACCTGGCCGACCTGTTCGGTACG 109 Query 61 CAGATGGTCGGTGCGATC 78 || |||||||| || ||| Sbjct 110 CAAATGGTCGGCGCCATC 127 >seq1695241 Length=127 Score = 118 bits (130), Expect = 4e-24 Identities = 85/98 (87%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 346 CTGGAGTGGAAAGCCGCGCCAGGTACTGTGCCATTGGCGATTGCCGCCTGGCTGGTGGTG 405 ||||||||||||||| | || || | |||||||||| | ||||||||||||| |||| Sbjct 9 CTGGAGTGGAAAGCCTCCCCTGGCAGCAAGCCATTGGCGGTCGCCGCCTGGCTGGGGGTG 68 Query 406 GGTATTCCGTTGGCGTGGGGTGTGTGGGTGACCCTGCA 443 || ||||||||||| ||||||||||||||||||||||| Sbjct 69 GGCATTCCGTTGGCATGGGGTGTGTGGGTGACCCTGCA 106 >seq499247 Length=102 Score = 107 bits (118), Expect = 7e-21 Identities = 65/69 (94%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 375 GCCATTGGCGATTGCCGCCTGGCTGGTGGTGGGTATTCCGTTGGCGTGGGGTGTGTGGGT 434 |||||||||| | |||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 13 GCCATTGGCGGTCGCCGCCTGGCTGGTGGTGGGCATTCCGTTGGCATGGGGTGTGTGGGT 72 Query 435 GACCCTGCA 443 ||||||||| Sbjct 73 GACCCTGCA 81 >seq1870728 Length=127 Score = 102 bits (112), Expect = 3e-19 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 375 GCCATTGGCGATTGCCGCCTGGCTGGTGGTGGGTATTCCGTTGGCGTGGGGTGTGTGGGT 434 |||||||||| | |||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct 13 GCCATTGGCGGTCGCCGCCTGGCTGGTGGTGGGCATTCCGTTGGCATGGGGGGTGTGGGT 72 Query 435 GACCCTGCA 443 ||||||||| Sbjct 73 GACCCTGCA 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1721148044640