Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001436.1 Length=198 Score E Sequences producing significant alignments: (Bits) Value seq2902590 262 4e-68 seq325441 214 2e-53 seq2458442 196 5e-48 seq2051533 176 5e-42 seq2408674 172 6e-41 seq2051534 170 2e-40 seq286802 150 2e-34 seq2362947 145 8e-33 seq2851069 102 8e-20 >seq2902590 Length=335 Score = 262 bits (290), Expect = 4e-68 Identities = 177/198 (89%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60 |||| || ||||| |||||||| || ||||||||||| |||||||||||||| ||||| | Sbjct 230 CGACTTTCTTGCTGGCCTTCAAACGACGGCCGGCGTTATTGATCGCCAGCTCAGCCAGAG 171 Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAG 120 |||||||||||||||| || |||||||||||||||||||| |||||||||||||| || | Sbjct 170 CCAGGCCCAGTTCCGGGTGTTCGTTGAGCCACAGGCTGAACGCGTCCTTGACCACACCGG 111 Query 121 AGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCG 180 ||||||||||||| ||||| |||||||||| ||||| |||||||| ||||||||||||| Sbjct 110 AGACAAACGCCGCCGCCTCACGGGACGACAAACGCTCTTTGGTCTGGCCGGAGAATTGCG 51 Query 181 GTTCCTGCATCTTCATCG 198 | |||||||| ||||||| Sbjct 50 GCTCCTGCATTTTCATCG 33 >seq325441 Length=1852 Score = 214 bits (236), Expect = 2e-53 Identities = 147/166 (89%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60 |||| || ||||| ||||| || || ||||||||||||||||||||||| || ||||||| Sbjct 770 CGACTTTCTTGCTGGCCTTTAAACGGCGGCCGGCGTTGTTGATCGCCAGTTCAGCCAGGG 711 Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAG 120 |||||||||||||||| ||||||||||||||||||||||| || ||||||||||| || | Sbjct 710 CCAGGCCCAGTTCCGGGTGCTCGTTGAGCCACAGGCTGAACGCATCCTTGACCACACCGG 651 Query 121 AGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTG 166 ||||||||||||| |||||||| || |||| ||||| |||||||| Sbjct 650 AGACAAACGCCGCCGCCTCGCGAGAGGACAAACGCTCTTTGGTCTG 605 >seq2458442 Length=161 Score = 196 bits (216), Expect = 5e-48 Identities = 132/148 (89%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60 ||||||||||||| |||||||| || ||||||||||| |||||||||| ||| ||||||| Sbjct 148 CGACCTTTTTGCTGGCCTTCAAACGGCGGCCGGCGTTATTGATCGCCAACTCGGCCAGGG 89 Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAG 120 |||||||||| ||||| ||||||||||||||||||||||| || || ||||||||||| | Sbjct 88 CCAGGCCCAGCTCCGGGTGCTCGTTGAGCCACAGGCTGAACGCATCTTTGACCACGCCGG 29 Query 121 AGACAAACGCCGCTGCCTCGCGGGACGA 148 ||||||||||||| || || || ||||| Sbjct 28 AGACAAACGCCGCCGCTTCACGCGACGA 1 >seq2051533 Length=127 Score = 176 bits (194), Expect = 5e-42 Identities = 115/127 (91%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 15 GCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGGCCAGGCCCAGTTCC 74 ||||| | ||| || |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 127 GCCTTGAGGCGACGACCGGCGTTGTTGATCGCCAGCTCCGCCAGGGCCAGGCCCAACTCC 68 Query 75 GGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCT 134 || ||||||||||||||||||||||| |||||||||||||| || || |||||||||||| Sbjct 67 GGGTGCTCGTTGAGCCACAGGCTGAAAGCGTCCTTGACCACACCGGACACAAACGCCGCT 8 Query 135 GCCTCGC 141 || |||| Sbjct 7 GCTTCGC 1 >seq2408674 Length=152 Score = 172 bits (190), Expect = 6e-41 Identities = 110/120 (92%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 79 GCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCT 138 |||||||||||||||||||||| |||||||||||||| || || |||||||||||||| | Sbjct 1 GCTCGTTGAGCCACAGGCTGAAAGCGTCCTTGACCACACCGGACACAAACGCCGCTGCTT 60 Query 139 CGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTCCTGCATCTTCATCG 198 ||||||| |||||||||||||||||||| |||||||| ||||| |||||||| ||||||| Sbjct 61 CGCGGGAGGACAGGCGCTCCTTGGTCTGACCGGAGAACTGCGGCTCCTGCATTTTCATCG 120 >seq2051534 Length=127 Score = 170 bits (188), Expect = 2e-40 Identities = 114/127 (90%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 15 GCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGGCCAGGCCCAGTTCC 74 ||||| | ||| || |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 127 GCCTTGAGGCGACGACCGGCGTTGTTGATCGCCAGCTCCGCCAGGGCCAGGCCCAACTCC 68 Query 75 GGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCT 134 || |||||||||||||||||||||| |||||||||||||| || || |||||||||||| Sbjct 67 GGGGGCTCGTTGAGCCACAGGCTGAAAGCGTCCTTGACCACACCGGACACAAACGCCGCT 8 Query 135 GCCTCGC 141 || |||| Sbjct 7 GCTTCGC 1 >seq286802 Length=419 Score = 150 bits (166), Expect = 2e-34 Identities = 101/113 (89%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 86 GAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTCGCGGGA 145 ||||||||||||||| || || ||||||||||| |||||||||||||| || || || || Sbjct 419 GAGCCACAGGCTGAACGCATCTTTGACCACGCCGGAGACAAACGCCGCCGCTTCACGCGA 360 Query 146 CGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTCCTGCATCTTCATCG 198 ||| ||||| ||||||||||| |||||||||||||| |||||||||||||||| Sbjct 359 CGATAGGCGTTCCTTGGTCTGACCGGAGAATTGCGGCTCCTGCATCTTCATCG 307 >seq2362947 Length=145 Score = 145 bits (160), Expect = 8e-33 Identities = 100/113 (88%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 86 GAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTCGCGGGA 145 ||||||||||||||| || || ||||||||||| |||||||||||||| || || || || Sbjct 1 GAGCCACAGGCTGAACGCATCTTTGACCACGCCGGAGACAAACGCCGCCGCTTCACGCGA 60 Query 146 CGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTCCTGCATCTTCATCG 198 ||||||||| || |||||||| |||||||||||||| |||||||| ||||||| Sbjct 61 CGACAGGCGTTCTTTGGTCTGACCGGAGAATTGCGGCTCCTGCATTTTCATCG 113 >seq2851069 Length=271 Score = 102 bits (112), Expect = 8e-20 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60 ||||||| ||||| ||||| | ||| || ||||||||||||||||||||||||||||||| Sbjct 195 CGACCTTCTTGCTGGCCTTGAGGCGACGACCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 254 Query 61 CCAGGCCCAGTTCCGG 76 ||||||||| ||||| Sbjct 255 CCAGGCCCAACTCCGG 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518410778553