Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001436.1
Length=198
Score E
Sequences producing significant alignments: (Bits) Value
seq2902590 262 4e-68
seq325441 214 2e-53
seq2458442 196 5e-48
seq2051533 176 5e-42
seq2408674 172 6e-41
seq2051534 170 2e-40
seq286802 150 2e-34
seq2362947 145 8e-33
seq2851069 102 8e-20
>seq2902590
Length=335
Score = 262 bits (290), Expect = 4e-68
Identities = 177/198 (89%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60
|||| || ||||| |||||||| || ||||||||||| |||||||||||||| ||||| |
Sbjct 230 CGACTTTCTTGCTGGCCTTCAAACGACGGCCGGCGTTATTGATCGCCAGCTCAGCCAGAG 171
Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAG 120
|||||||||||||||| || |||||||||||||||||||| |||||||||||||| || |
Sbjct 170 CCAGGCCCAGTTCCGGGTGTTCGTTGAGCCACAGGCTGAACGCGTCCTTGACCACACCGG 111
Query 121 AGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCG 180
||||||||||||| ||||| |||||||||| ||||| |||||||| |||||||||||||
Sbjct 110 AGACAAACGCCGCCGCCTCACGGGACGACAAACGCTCTTTGGTCTGGCCGGAGAATTGCG 51
Query 181 GTTCCTGCATCTTCATCG 198
| |||||||| |||||||
Sbjct 50 GCTCCTGCATTTTCATCG 33
>seq325441
Length=1852
Score = 214 bits (236), Expect = 2e-53
Identities = 147/166 (89%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60
|||| || ||||| ||||| || || ||||||||||||||||||||||| || |||||||
Sbjct 770 CGACTTTCTTGCTGGCCTTTAAACGGCGGCCGGCGTTGTTGATCGCCAGTTCAGCCAGGG 711
Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAG 120
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||| || |
Sbjct 710 CCAGGCCCAGTTCCGGGTGCTCGTTGAGCCACAGGCTGAACGCATCCTTGACCACACCGG 651
Query 121 AGACAAACGCCGCTGCCTCGCGGGACGACAGGCGCTCCTTGGTCTG 166
||||||||||||| |||||||| || |||| ||||| ||||||||
Sbjct 650 AGACAAACGCCGCCGCCTCGCGAGAGGACAAACGCTCTTTGGTCTG 605
>seq2458442
Length=161
Score = 196 bits (216), Expect = 5e-48
Identities = 132/148 (89%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60
||||||||||||| |||||||| || ||||||||||| |||||||||| ||| |||||||
Sbjct 148 CGACCTTTTTGCTGGCCTTCAAACGGCGGCCGGCGTTATTGATCGCCAACTCGGCCAGGG 89
Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAG 120
|||||||||| ||||| ||||||||||||||||||||||| || || ||||||||||| |
Sbjct 88 CCAGGCCCAGCTCCGGGTGCTCGTTGAGCCACAGGCTGAACGCATCTTTGACCACGCCGG 29
Query 121 AGACAAACGCCGCTGCCTCGCGGGACGA 148
||||||||||||| || || || |||||
Sbjct 28 AGACAAACGCCGCCGCTTCACGCGACGA 1
>seq2051533
Length=127
Score = 176 bits (194), Expect = 5e-42
Identities = 115/127 (91%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 15 GCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGGCCAGGCCCAGTTCC 74
||||| | ||| || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 127 GCCTTGAGGCGACGACCGGCGTTGTTGATCGCCAGCTCCGCCAGGGCCAGGCCCAACTCC 68
Query 75 GGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCT 134
|| ||||||||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 67 GGGTGCTCGTTGAGCCACAGGCTGAAAGCGTCCTTGACCACACCGGACACAAACGCCGCT 8
Query 135 GCCTCGC 141
|| ||||
Sbjct 7 GCTTCGC 1
>seq2408674
Length=152
Score = 172 bits (190), Expect = 6e-41
Identities = 110/120 (92%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 79 GCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCT 138
|||||||||||||||||||||| |||||||||||||| || || |||||||||||||| |
Sbjct 1 GCTCGTTGAGCCACAGGCTGAAAGCGTCCTTGACCACACCGGACACAAACGCCGCTGCTT 60
Query 139 CGCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTCCTGCATCTTCATCG 198
||||||| |||||||||||||||||||| |||||||| ||||| |||||||| |||||||
Sbjct 61 CGCGGGAGGACAGGCGCTCCTTGGTCTGACCGGAGAACTGCGGCTCCTGCATTTTCATCG 120
>seq2051534
Length=127
Score = 170 bits (188), Expect = 2e-40
Identities = 114/127 (90%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 15 GCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGGCCAGGCCCAGTTCC 74
||||| | ||| || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 127 GCCTTGAGGCGACGACCGGCGTTGTTGATCGCCAGCTCCGCCAGGGCCAGGCCCAACTCC 68
Query 75 GGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCT 134
|| |||||||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 67 GGGGGCTCGTTGAGCCACAGGCTGAAAGCGTCCTTGACCACACCGGACACAAACGCCGCT 8
Query 135 GCCTCGC 141
|| ||||
Sbjct 7 GCTTCGC 1
>seq286802
Length=419
Score = 150 bits (166), Expect = 2e-34
Identities = 101/113 (89%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 86 GAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTCGCGGGA 145
||||||||||||||| || || ||||||||||| |||||||||||||| || || || ||
Sbjct 419 GAGCCACAGGCTGAACGCATCTTTGACCACGCCGGAGACAAACGCCGCCGCTTCACGCGA 360
Query 146 CGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTCCTGCATCTTCATCG 198
||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 359 CGATAGGCGTTCCTTGGTCTGACCGGAGAATTGCGGCTCCTGCATCTTCATCG 307
>seq2362947
Length=145
Score = 145 bits (160), Expect = 8e-33
Identities = 100/113 (88%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 86 GAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTCGCGGGA 145
||||||||||||||| || || ||||||||||| |||||||||||||| || || || ||
Sbjct 1 GAGCCACAGGCTGAACGCATCTTTGACCACGCCGGAGACAAACGCCGCCGCTTCACGCGA 60
Query 146 CGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTCCTGCATCTTCATCG 198
||||||||| || |||||||| |||||||||||||| |||||||| |||||||
Sbjct 61 CGACAGGCGTTCTTTGGTCTGACCGGAGAATTGCGGCTCCTGCATTTTCATCG 113
>seq2851069
Length=271
Score = 102 bits (112), Expect = 8e-20
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60
||||||| ||||| ||||| | ||| || |||||||||||||||||||||||||||||||
Sbjct 195 CGACCTTCTTGCTGGCCTTGAGGCGACGACCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 254
Query 61 CCAGGCCCAGTTCCGG 76
||||||||| |||||
Sbjct 255 CCAGGCCCAACTCCGG 270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 518410778553
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |