Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001445.1
Length=285
Score E
Sequences producing significant alignments: (Bits) Value
seq250951 306 6e-81
seq2767287 279 8e-73
seq2767286 279 8e-73
seq2878938 248 1e-63
seq2574540 205 1e-50
seq1707923 190 3e-46
seq1885420 185 1e-44
seq2739995 140 5e-31
seq3006949 136 6e-30
seq2683383 123 4e-26
seq294439 120 5e-25
seq2911099 118 2e-24
>seq250951
Length=402
Score = 306 bits (338), Expect = 6e-81
Identities = 220/258 (85%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 28 CCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCGAGGAGCAGATCCTGCTCGGCATCAC 87
|||||||||||| |||||||||||||| || ||||| |||||||| ||||||||||||||
Sbjct 1 CCCGCGTGATCGTCTGGTGCTGGTGCAAGTCGGCGAAGAGCAGATTCTGCTCGGCATCAC 60
Query 88 CCCCGGCCGCATCACCCCGCTGCATGTACTCAAGACCCCGGTGGACGCGGTCAAGACCGA 147
|| ||||| ||||||||| ||||||| |||||| | |||||||| | || |||||||||
Sbjct 61 GCCTGGCCGTATCACCCCGTTGCATGTGCTCAAGTCGCCGGTGGAAGTGGCCAAGACCGA 120
Query 148 AGCCGCCACGCNNNNNNNNNNNNAGCGCCTGATGGAGTTGCTGGGCAAGGATCAAAAGGA 207
|||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 121 GGCCGCCACGCCAGAATTCGCCCAGCGCCTGATGGAGTTGCTGGGCAAGGATCAGAAGGA 180
Query 208 TAAGAAGTAATGCGCGTTTTGTTGACGCTCATGCTGTTGCTGGCCGCACCGATGGCCCTG 267
|||||||||||||||||||| |||||||||||||||||||||||||| || |||| |
Sbjct 181 TAAGAAGTAATGCGCGTTTTATTGACGCTCATGCTGTTGCTGGCCGCGCCACTGGCGTTT 240
Query 268 GGCGCCGACCCGTTGTCG 285
| |||||||||||||||
Sbjct 241 GCGGCCGACCCGTTGTCG 258
>seq2767287
Length=220
Score = 279 bits (308), Expect = 8e-73
Identities = 190/218 (87%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 3 AGCTGGTGGGCTCGCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCG 62
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 AGATGATCGGCTCGCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCG 159
Query 63 AGGAGCAGATCCTGCTCGGCATCACCCCCGGCCGCATCACCCCGCTGCATGTACTCAAGA 122
| ||||| ||||||||||||||||| ||||| |||||||||||| |||| ||||||||||
Sbjct 158 AAGAGCAAATCCTGCTCGGCATCACGCCCGGTCGCATCACCCCGTTGCACGTACTCAAGA 99
Query 123 CCCCGGTGGACGCGGTCAAGACCGAAGCCGCCACGCNNNNNNNNNNNNAGCGCCTGATGG 182
| || ||||||||| ||| ||||| |||||||||| ||||||||||||
Sbjct 98 CGCCAGTGGACGCGACCAAAACCGAGGCCGCCACGCCGGAATTCGCCCAGCGCCTGATGG 39
Query 183 AGTTGCTGGGCAAGGATCAAAAGGATAAGAAGTAATGC 220
||||||||||||||||||| ||||||||||||||||||
Sbjct 38 AGTTGCTGGGCAAGGATCAGAAGGATAAGAAGTAATGC 1
>seq2767286
Length=220
Score = 279 bits (308), Expect = 8e-73
Identities = 190/218 (87%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 3 AGCTGGTGGGCTCGCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCG 62
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 AGATGATCGGCTCGCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCG 159
Query 63 AGGAGCAGATCCTGCTCGGCATCACCCCCGGCCGCATCACCCCGCTGCATGTACTCAAGA 122
|||||||||| |||||||||||||| ||||| |||||||||||| |||| || |||||||
Sbjct 158 AGGAGCAGATTCTGCTCGGCATCACGCCCGGTCGCATCACCCCGTTGCACGTGCTCAAGA 99
Query 123 CCCCGGTGGACGCGGTCAAGACCGAAGCCGCCACGCNNNNNNNNNNNNAGCGCCTGATGG 182
| |||||||| || | ||||||||| |||||||| | ||||||||||||
Sbjct 98 CGCCGGTGGAAGCCGCCAAGACCGAGGCCGCCACACCGGAATTCGCCCAGCGCCTGATGG 39
Query 183 AGTTGCTGGGCAAGGATCAAAAGGATAAGAAGTAATGC 220
||||||||||||||||||| ||||||||||||||||||
Sbjct 38 AGTTGCTGGGCAAGGATCAGAAGGATAAGAAGTAATGC 1
>seq2878938
Length=301
Score = 248 bits (274), Expect = 1e-63
Identities = 172/199 (86%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 87 CCCCCGGCCGCATCACCCCGCTGCATGTACTCAAGACCCCGGTGGACGCGGTCAAGACCG 146
|||| ||||||||||||||| |||| ||||||||||||||||||||||||| || ||||
Sbjct 301 CCCCTGGCCGCATCACCCCGTTGCACGTACTCAAGACCCCGGTGGACGCGGCCAGCACCG 242
Query 147 AAGCCGCCACGCNNNNNNNNNNNNAGCGCCTGATGGAGTTGCTGGGCAAGGATCAAAAGG 206
| ||||||||| ||||||||||||| ||||||||||||||||| ||||
Sbjct 241 AGACCGCCACGCCAGAATTCGCCCAGCGCCTGATGGAATTGCTGGGCAAGGATCAGAAGG 182
Query 207 ATAAGAAGTAATGCGCGTTTTGTTGACGCTCATGCTGTTGCTGGCCGCACCGATGGCCCT 266
|||||||||||||||||| || ||||||||||||||||||||||||| |||||||| ||
Sbjct 181 ATAAGAAGTAATGCGCGTGTTCCTGACGCTCATGCTGTTGCTGGCCGCGCCGATGGCACT 122
Query 267 GGGCGCCGACCCGTTGTCG 285
|||||||||||||||||||
Sbjct 121 GGGCGCCGACCCGTTGTCG 103
>seq2574540
Length=177
Score = 205 bits (226), Expect = 1e-50
Identities = 149/177 (84%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 28 CCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCGAGGAGCAGATCCTGCTCGGCATCAC 87
|||||||||||| |||||||||||||| || ||||| |||||||| ||||||||||||||
Sbjct 1 CCCGCGTGATCGTCTGGTGCTGGTGCAAGTCGGCGAAGAGCAGATTCTGCTCGGCATCAC 60
Query 88 CCCCGGCCGCATCACCCCGCTGCATGTACTCAAGACCCCGGTGGACGCGGTCAAGACCGA 147
|||||||| ||||||||||||||||| |||||| | |||||||| | || || ||||||
Sbjct 61 GCCCGGCCGTATCACCCCGCTGCATGTGCTCAAGTCGCCGGTGGAAGTGGCCAGGACCGA 120
Query 148 AGCCGCCACGCNNNNNNNNNNNNAGCGCCTGATGGAGTTGCTGGGCAAGGATCAAAA 204
|||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 121 GGCCGCCACGCCAGAATTCGCCCAGCGCCTGATGGAGTTGCTGGGCAAGGATCAGAA 177
>seq1707923
Length=127
Score = 190 bits (210), Expect = 3e-46
Identities = 117/125 (94%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 23 CTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCGAGGAGCAGATCCTGCTCGGC 82
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 CTCGGCCCGCGGGACCGGCTGGTGCTGGTGCAGGTGGGCGAGGAGCAGATCCTGCTCGGC 68
Query 83 ATCACCCCCGGCCGCATCACCCCGCTGCATGTACTCAAGACCCCGGTGGACGCGGTCAAG 142
|||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| ||
Sbjct 67 ATCACCCCTGGCCGCATCACCCCGTTGCACGTACTCAAGACCCCGGTGGACGCGGCCAGC 8
Query 143 ACCGA 147
|||||
Sbjct 7 ACCGA 3
>seq1885420
Length=127
Score = 185 bits (204), Expect = 1e-44
Identities = 116/125 (93%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 23 CTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCGAGGAGCAGATCCTGCTCGGC 82
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 CTCGGCCCGCGGGACCGGCTGGTGCTGGTGCAGGTGGGCGAGGAGCAGATCCTGCTCGGC 68
Query 83 ATCACCCCCGGCCGCATCACCCCGCTGCATGTACTCAAGACCCCGGTGGACGCGGTCAAG 142
||| |||| ||||||||||||||| |||| ||||||||||||||||||||||||| ||
Sbjct 67 ATCCCCCCTGGCCGCATCACCCCGTTGCACGTACTCAAGACCCCGGTGGACGCGGCCAGC 8
Query 143 ACCGA 147
|||||
Sbjct 7 ACCGA 3
>seq2739995
Length=210
Score = 140 bits (154), Expect = 5e-31
Identities = 89/97 (92%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 189 TGGGCAAGGATCAAAAGGATAAGAAGTAATGCGCGTTTTGTTGACGCTCATGCTGTTGCT 248
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 210 TGGGCAAGGATCAGAAGGATAAGAAGTAATGCGCGTTTTATTGACGCTCATGCTGTTGCT 151
Query 249 GGCCGCACCGATGGCCCTGGGCGCCGACCCGTTGTCG 285
||| |||||| |||| ||| |||||||||||||||
Sbjct 150 GGCAGCACCGCTGGCGTTGGCAGCCGACCCGTTGTCG 114
>seq3006949
Length=707
Score = 136 bits (150), Expect = 6e-30
Identities = 80/83 (96%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 3 AGCTGGTGGGCTCGCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCG 62
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 83 AGCTGGTCGGCTCGCGCGCCCTCGGCCCGCGGGACCGGCTGGTGCTGGTGCAGGTGGGCG 24
Query 63 AGGAGCAGATCCTGCTCGGCATC 85
|||||||||||||||||||||||
Sbjct 23 AGGAGCAGATCCTGCTCGGCATC 1
>seq2683383
Length=193
Score = 123 bits (136), Expect = 4e-26
Identities = 82/91 (90%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 195 AGGATCAAAAGGATAAGAAGTAATGCGCGTTTTGTTGACGCTCATGCTGTTGCTGGCCGC 254
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 193 AGGATCAGAAGGATAAGAAGTAATGCGCGTTTTATTGACGCTCATGCTGTTGCTGGCCGC 134
Query 255 ACCGATGGCCCTGGGCGCCGACCCGTTGTCG 285
||| |||| | | |||||||||||||||
Sbjct 133 GCCGCTGGCGTTTGCGGCCGACCCGTTGTCG 103
>seq294439
Length=1387
Score = 120 bits (132), Expect = 5e-25
Identities = 81/91 (89%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 195 AGGATCAAAAGGATAAGAAGTAATGCGCGTTTTGTTGACGCTCATGCTGTTGCTGGCCGC 254
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AGGATCAGAAGGATAAGAAGTAATGCGCGTTTTATTGACGCTCATGCTGTTGCTGGCCGC 60
Query 255 ACCGATGGCCCTGGGCGCCGACCCGTTGTCG 285
|| |||| | | |||||||||||||||
Sbjct 61 GCCTTTGGCGTTTGCGGCCGACCCGTTGTCG 91
>seq2911099
Length=351
Score = 118 bits (130), Expect = 2e-24
Identities = 79/88 (90%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 3 AGCTGGTGGGCTCGCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCG 62
|| || | ||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 88 AGATGATCGGCTCGCGCGCCCTCGGCCCGCGTGATCGTCTGGTGCTGGTGCAAGTCGGCG 29
Query 63 AGGAGCAGATCCTGCTCGGCATCACCCC 90
| |||||||| |||||||||||||| ||
Sbjct 28 AAGAGCAGATTCTGCTCGGCATCACGCC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 788481064386
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