Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001445.1 Length=285 Score E Sequences producing significant alignments: (Bits) Value seq250951 306 6e-81 seq2767287 279 8e-73 seq2767286 279 8e-73 seq2878938 248 1e-63 seq2574540 205 1e-50 seq1707923 190 3e-46 seq1885420 185 1e-44 seq2739995 140 5e-31 seq3006949 136 6e-30 seq2683383 123 4e-26 seq294439 120 5e-25 seq2911099 118 2e-24 >seq250951 Length=402 Score = 306 bits (338), Expect = 6e-81 Identities = 220/258 (85%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 28 CCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCGAGGAGCAGATCCTGCTCGGCATCAC 87 |||||||||||| |||||||||||||| || ||||| |||||||| |||||||||||||| Sbjct 1 CCCGCGTGATCGTCTGGTGCTGGTGCAAGTCGGCGAAGAGCAGATTCTGCTCGGCATCAC 60 Query 88 CCCCGGCCGCATCACCCCGCTGCATGTACTCAAGACCCCGGTGGACGCGGTCAAGACCGA 147 || ||||| ||||||||| ||||||| |||||| | |||||||| | || ||||||||| Sbjct 61 GCCTGGCCGTATCACCCCGTTGCATGTGCTCAAGTCGCCGGTGGAAGTGGCCAAGACCGA 120 Query 148 AGCCGCCACGCNNNNNNNNNNNNAGCGCCTGATGGAGTTGCTGGGCAAGGATCAAAAGGA 207 |||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 121 GGCCGCCACGCCAGAATTCGCCCAGCGCCTGATGGAGTTGCTGGGCAAGGATCAGAAGGA 180 Query 208 TAAGAAGTAATGCGCGTTTTGTTGACGCTCATGCTGTTGCTGGCCGCACCGATGGCCCTG 267 |||||||||||||||||||| |||||||||||||||||||||||||| || |||| | Sbjct 181 TAAGAAGTAATGCGCGTTTTATTGACGCTCATGCTGTTGCTGGCCGCGCCACTGGCGTTT 240 Query 268 GGCGCCGACCCGTTGTCG 285 | ||||||||||||||| Sbjct 241 GCGGCCGACCCGTTGTCG 258 >seq2767287 Length=220 Score = 279 bits (308), Expect = 8e-73 Identities = 190/218 (87%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 3 AGCTGGTGGGCTCGCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCG 62 || || | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 218 AGATGATCGGCTCGCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCG 159 Query 63 AGGAGCAGATCCTGCTCGGCATCACCCCCGGCCGCATCACCCCGCTGCATGTACTCAAGA 122 | ||||| ||||||||||||||||| ||||| |||||||||||| |||| |||||||||| Sbjct 158 AAGAGCAAATCCTGCTCGGCATCACGCCCGGTCGCATCACCCCGTTGCACGTACTCAAGA 99 Query 123 CCCCGGTGGACGCGGTCAAGACCGAAGCCGCCACGCNNNNNNNNNNNNAGCGCCTGATGG 182 | || ||||||||| ||| ||||| |||||||||| |||||||||||| Sbjct 98 CGCCAGTGGACGCGACCAAAACCGAGGCCGCCACGCCGGAATTCGCCCAGCGCCTGATGG 39 Query 183 AGTTGCTGGGCAAGGATCAAAAGGATAAGAAGTAATGC 220 ||||||||||||||||||| |||||||||||||||||| Sbjct 38 AGTTGCTGGGCAAGGATCAGAAGGATAAGAAGTAATGC 1 >seq2767286 Length=220 Score = 279 bits (308), Expect = 8e-73 Identities = 190/218 (87%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 3 AGCTGGTGGGCTCGCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCG 62 || || | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 218 AGATGATCGGCTCGCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCG 159 Query 63 AGGAGCAGATCCTGCTCGGCATCACCCCCGGCCGCATCACCCCGCTGCATGTACTCAAGA 122 |||||||||| |||||||||||||| ||||| |||||||||||| |||| || ||||||| Sbjct 158 AGGAGCAGATTCTGCTCGGCATCACGCCCGGTCGCATCACCCCGTTGCACGTGCTCAAGA 99 Query 123 CCCCGGTGGACGCGGTCAAGACCGAAGCCGCCACGCNNNNNNNNNNNNAGCGCCTGATGG 182 | |||||||| || | ||||||||| |||||||| | |||||||||||| Sbjct 98 CGCCGGTGGAAGCCGCCAAGACCGAGGCCGCCACACCGGAATTCGCCCAGCGCCTGATGG 39 Query 183 AGTTGCTGGGCAAGGATCAAAAGGATAAGAAGTAATGC 220 ||||||||||||||||||| |||||||||||||||||| Sbjct 38 AGTTGCTGGGCAAGGATCAGAAGGATAAGAAGTAATGC 1 >seq2878938 Length=301 Score = 248 bits (274), Expect = 1e-63 Identities = 172/199 (86%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 87 CCCCCGGCCGCATCACCCCGCTGCATGTACTCAAGACCCCGGTGGACGCGGTCAAGACCG 146 |||| ||||||||||||||| |||| ||||||||||||||||||||||||| || |||| Sbjct 301 CCCCTGGCCGCATCACCCCGTTGCACGTACTCAAGACCCCGGTGGACGCGGCCAGCACCG 242 Query 147 AAGCCGCCACGCNNNNNNNNNNNNAGCGCCTGATGGAGTTGCTGGGCAAGGATCAAAAGG 206 | ||||||||| ||||||||||||| ||||||||||||||||| |||| Sbjct 241 AGACCGCCACGCCAGAATTCGCCCAGCGCCTGATGGAATTGCTGGGCAAGGATCAGAAGG 182 Query 207 ATAAGAAGTAATGCGCGTTTTGTTGACGCTCATGCTGTTGCTGGCCGCACCGATGGCCCT 266 |||||||||||||||||| || ||||||||||||||||||||||||| |||||||| || Sbjct 181 ATAAGAAGTAATGCGCGTGTTCCTGACGCTCATGCTGTTGCTGGCCGCGCCGATGGCACT 122 Query 267 GGGCGCCGACCCGTTGTCG 285 ||||||||||||||||||| Sbjct 121 GGGCGCCGACCCGTTGTCG 103 >seq2574540 Length=177 Score = 205 bits (226), Expect = 1e-50 Identities = 149/177 (84%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 28 CCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCGAGGAGCAGATCCTGCTCGGCATCAC 87 |||||||||||| |||||||||||||| || ||||| |||||||| |||||||||||||| Sbjct 1 CCCGCGTGATCGTCTGGTGCTGGTGCAAGTCGGCGAAGAGCAGATTCTGCTCGGCATCAC 60 Query 88 CCCCGGCCGCATCACCCCGCTGCATGTACTCAAGACCCCGGTGGACGCGGTCAAGACCGA 147 |||||||| ||||||||||||||||| |||||| | |||||||| | || || |||||| Sbjct 61 GCCCGGCCGTATCACCCCGCTGCATGTGCTCAAGTCGCCGGTGGAAGTGGCCAGGACCGA 120 Query 148 AGCCGCCACGCNNNNNNNNNNNNAGCGCCTGATGGAGTTGCTGGGCAAGGATCAAAA 204 |||||||||| ||||||||||||||||||||||||||||||| || Sbjct 121 GGCCGCCACGCCAGAATTCGCCCAGCGCCTGATGGAGTTGCTGGGCAAGGATCAGAA 177 >seq1707923 Length=127 Score = 190 bits (210), Expect = 3e-46 Identities = 117/125 (94%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 23 CTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCGAGGAGCAGATCCTGCTCGGC 82 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 CTCGGCCCGCGGGACCGGCTGGTGCTGGTGCAGGTGGGCGAGGAGCAGATCCTGCTCGGC 68 Query 83 ATCACCCCCGGCCGCATCACCCCGCTGCATGTACTCAAGACCCCGGTGGACGCGGTCAAG 142 |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| || Sbjct 67 ATCACCCCTGGCCGCATCACCCCGTTGCACGTACTCAAGACCCCGGTGGACGCGGCCAGC 8 Query 143 ACCGA 147 ||||| Sbjct 7 ACCGA 3 >seq1885420 Length=127 Score = 185 bits (204), Expect = 1e-44 Identities = 116/125 (93%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 23 CTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCGAGGAGCAGATCCTGCTCGGC 82 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 CTCGGCCCGCGGGACCGGCTGGTGCTGGTGCAGGTGGGCGAGGAGCAGATCCTGCTCGGC 68 Query 83 ATCACCCCCGGCCGCATCACCCCGCTGCATGTACTCAAGACCCCGGTGGACGCGGTCAAG 142 ||| |||| ||||||||||||||| |||| ||||||||||||||||||||||||| || Sbjct 67 ATCCCCCCTGGCCGCATCACCCCGTTGCACGTACTCAAGACCCCGGTGGACGCGGCCAGC 8 Query 143 ACCGA 147 ||||| Sbjct 7 ACCGA 3 >seq2739995 Length=210 Score = 140 bits (154), Expect = 5e-31 Identities = 89/97 (92%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 189 TGGGCAAGGATCAAAAGGATAAGAAGTAATGCGCGTTTTGTTGACGCTCATGCTGTTGCT 248 ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 210 TGGGCAAGGATCAGAAGGATAAGAAGTAATGCGCGTTTTATTGACGCTCATGCTGTTGCT 151 Query 249 GGCCGCACCGATGGCCCTGGGCGCCGACCCGTTGTCG 285 ||| |||||| |||| ||| ||||||||||||||| Sbjct 150 GGCAGCACCGCTGGCGTTGGCAGCCGACCCGTTGTCG 114 >seq3006949 Length=707 Score = 136 bits (150), Expect = 6e-30 Identities = 80/83 (96%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 3 AGCTGGTGGGCTCGCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCG 62 ||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 83 AGCTGGTCGGCTCGCGCGCCCTCGGCCCGCGGGACCGGCTGGTGCTGGTGCAGGTGGGCG 24 Query 63 AGGAGCAGATCCTGCTCGGCATC 85 ||||||||||||||||||||||| Sbjct 23 AGGAGCAGATCCTGCTCGGCATC 1 >seq2683383 Length=193 Score = 123 bits (136), Expect = 4e-26 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 195 AGGATCAAAAGGATAAGAAGTAATGCGCGTTTTGTTGACGCTCATGCTGTTGCTGGCCGC 254 ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 193 AGGATCAGAAGGATAAGAAGTAATGCGCGTTTTATTGACGCTCATGCTGTTGCTGGCCGC 134 Query 255 ACCGATGGCCCTGGGCGCCGACCCGTTGTCG 285 ||| |||| | | ||||||||||||||| Sbjct 133 GCCGCTGGCGTTTGCGGCCGACCCGTTGTCG 103 >seq294439 Length=1387 Score = 120 bits (132), Expect = 5e-25 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 195 AGGATCAAAAGGATAAGAAGTAATGCGCGTTTTGTTGACGCTCATGCTGTTGCTGGCCGC 254 ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 AGGATCAGAAGGATAAGAAGTAATGCGCGTTTTATTGACGCTCATGCTGTTGCTGGCCGC 60 Query 255 ACCGATGGCCCTGGGCGCCGACCCGTTGTCG 285 || |||| | | ||||||||||||||| Sbjct 61 GCCTTTGGCGTTTGCGGCCGACCCGTTGTCG 91 >seq2911099 Length=351 Score = 118 bits (130), Expect = 2e-24 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 3 AGCTGGTGGGCTCGCGCGCCCTCGGCCCGCGTGATCGGCTGGTGCTGGTGCAGGTGGGCG 62 || || | ||||||||||||||||||||||||||||| |||||||||||||| || |||| Sbjct 88 AGATGATCGGCTCGCGCGCCCTCGGCCCGCGTGATCGTCTGGTGCTGGTGCAAGTCGGCG 29 Query 63 AGGAGCAGATCCTGCTCGGCATCACCCC 90 | |||||||| |||||||||||||| || Sbjct 28 AAGAGCAGATTCTGCTCGGCATCACGCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788481064386